Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.15252/msb.202010108

https://doi.org/10.15252/msb.202010108

Joint cell segmentation and cell type annotation for spatial transcriptomics

Cited by: 40
Author(s): Russell Littman, Zachary Hemminger, Robert T. Foreman, Douglas Arneson, Guanglin Zhang, Fernando Gómez‐Pinilla, Xia Yang, Roy Wollman
Published: over 3 years ago

Software Mentions 10

cran: tensorflow

R Interface to 'TensorFlow'
Papers that mentioned: 71

pypi: custom

Custom self carry
Papers that mentioned: 1,363

pypi: matplotlib

Python plotting package
Papers that mentioned: 1,045

pypi: numpy

Fundamental package for array computing in Python
Papers that mentioned: 832

pypi: pandas

Powerful data structures for data analysis, time series, and statistics
Papers that mentioned: 640

pypi: pciSeq

Probabilistic cell typing for spatial transcriptomics
Papers that mentioned: 3

pypi: scipy

Fundamental algorithms for scientific computing in Python
Papers that mentioned: 1,071

pypi: seaborn

Statistical data visualization
Papers that mentioned: 283

pypi: skimage

Dummy package that points to scikit-image
Papers that mentioned: 26

pypi: tensorflow

TensorFlow is an open source machine learning framework for everyone.
Papers that mentioned: 71