Projects: pypi: pciSeq
https://packages.ecosyste.ms/registries/pypi.org/packages/pciSeq
Probabilistic cell typing for spatial transcriptomics
53 versions
Latest release: almost 3 years ago
120 downloads last month
Enhanced Analysis
Repository Activity:
Repository Owner:
Dimitris Nicoloutsopoulos (user)
Quantitative neuroscience @ UCL
Quantitative neuroscience @ UCL
README Analysis:
Science Score: 71/100
Starting Score: 100 points
Bonuses:
-
+6
Science terms in README
3 scientific terms found in README -
+6
Academic links
1 academic links found in README
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem -
-15
No science keywords
No scientific terms found in keywords/classifiers -
-10
No science terms in description
No scientific terms found in description
Very Likely Science (71)
Papers Mentioning pciSeq 3
10.15252/msb.202010108
Joint cell segmentation and cell type annotation for spatial transcriptomicsCited by: 40
Author(s): Russell Littman, Zachary Hemminger, Robert T. Foreman, Douglas Arneson, Guanglin Zhang, Fernando Gómez‐Pinilla, Xia Yang, Roy Wollman
Software Mentions: 10
Published: about 5 years ago
10.1038/s42003-021-02517-z
Comprehensive in situ mapping of human cortical transcriptomic cell typesCited by: 11
Author(s): Christoffer Mattsson Langseth, Daniel Gyllborg, Jeremy A. Miller, Jennie Close, Brian Long, Ed Lein, Markus M. Hilscher, Mats Nilsson
Software Mentions: 3
Published: almost 5 years ago
10.1186/s12859-021-04302-5
Matisse: a MATLAB-based analysis toolbox for in situ sequencing expression mapsCited by: 2
Author(s): Sergio Marco Salas, Daniel Gyllborg, Christoffer Mattsson Langseth, Mats Nilsson
Software Mentions: 1
Published: almost 5 years ago