Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: pciSeq

https://packages.ecosyste.ms/registries/pypi.org/packages/pciSeq

Probabilistic cell typing for spatial transcriptomics
53 versions
Latest release: about 1 year ago
120 downloads last month

Papers Mentioning pciSeq 3

10.15252/msb.202010108
Joint cell segmentation and cell type annotation for spatial transcriptomics
Cited by: 40
Author(s): Russell Littman, Zachary Hemminger, Robert T. Foreman, Douglas Arneson, Guanglin Zhang, Fernando Gómez‐Pinilla, Xia Yang, Roy Wollman
Software Mentions: 10
Published: over 3 years ago
10.1038/s42003-021-02517-z
Comprehensive in situ mapping of human cortical transcriptomic cell types
Cited by: 11
Author(s): Christoffer Mattsson Langseth, Daniel Gyllborg, Jeremy A. Miller, Jennie Close, Brian Long, Ed Lein, Markus M. Hilscher, Mats Nilsson
Software Mentions: 3
Published: over 3 years ago
10.1186/s12859-021-04302-5
Matisse: a MATLAB-based analysis toolbox for in situ sequencing expression maps
Cited by: 2
Author(s): Sergio Marco Salas, Daniel Gyllborg, Christoffer Mattsson Langseth, Mats Nilsson
Software Mentions: 1
Published: over 3 years ago