Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: CLAM

https://packages.ecosyste.ms/registries/pypi.org/packages/CLAM

Turns command-line tools into fully-fledged RESTful webservices with an auto-generated web-interface for human end-users.
152 versions
Latest release: about 1 year ago
145 downloads last month

Papers Mentioning CLAM 26

10.1007/s41114-018-0015-6

Computer algebra in gravity research
Cited by: 20
Author(s): Malcolm MacCallum
Software Mentions: 13
Published: over 6 years ago

Habitat Heterogeneity and Connectivity: Effects on the Planktonic Protist Community Structure at Two Adjacent Coastal Sites (the Lagoon and the Gulf of Venice, Northern Adriatic Sea, Italy) Revealed by Metabarcoding
Cited by: 14
Author(s): Simona Armeli Minicante, Roberta Piredda, Grazia Marina Quero, Stefania Finotto, Fabrizio Bernardi Aubry, Mauro Bastianini, Alessandra Pugnetti, Adriana Zingone
Software Mentions: 8
Published: about 5 years ago

10.1186/s13059-019-1757-5

Multilayered control of exon acquisition permits the emergence of novel forms of regulatory control
Cited by: 14
Author(s): Nesli Avgan, Juli I. Wang, Javier Fernández-Chamorro, Robert J. Weatheritt
Software Mentions: 4
Published: over 5 years ago

10.3390/ijerph18137039

Identifying the Weaker Function Links in the Hazardous Chemicals Road Transportation System in China
Cited by: 4
Author(s): Laihao Ma, Xiaoxue Ma, Jingwen Zhang, Qing Yang, Kai Wei
Software Mentions: 3
Published: over 3 years ago

10.3389/fmicb.2017.02670

Composition and Functional Specialists of the Gut Microbiota of Frogs Reflect Habitat Differences and Agricultural Activity
Cited by: 44
Author(s): Bing Huang, Chun Wen Chang, Chih-Wei Huang, Jian Gao, Pei Chun Liao
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0078248

Sharing of Diverse Mycorrhizal and Root-Endophytic Fungi among Plant Species in an Oak-Dominated Cool–Temperate Forest
Cited by: 63
Author(s): Hirokazu Toju, Satoshi Yamamoto, Hirotoshi Sato, Akifumi S. Tanabe
Software Mentions: 3
Published: about 11 years ago

10.1098/rstb.2019.0345

Mobile genomics: tools and techniques for tackling transposons
Cited by: 34
Author(s): Kathryn O’Neill, David Brocks, Molly Gale Hammell
Software Mentions: 3
Published: almost 5 years ago

10.3390/s100908504

Sensor Networks in the Low Lands
Cited by: 9
Author(s): Nirvana Meratnia, Berend Jan van der Zwaag, Hylke W. van Dijk, Dennis Bijwaard, Paul J.M. Havinga
Software Mentions: 2
Published: over 14 years ago

10.3389/fmicb.2015.01028

A unique assemblage of cosmopolitan freshwater bacteria and higher community diversity differentiate an urbanized estuary from oligotrophic Lake Michigan
Cited by: 73
Author(s): Ryan J. Newton, Sandra L. McLellan
Software Mentions: 2
Published: about 9 years ago

10.1002/ece3.706

How are plant and fungal communities linked to each other in belowground ecosystems? A massively parallel pyrosequencing analysis of the association specificity of root-associated fungi and their host plants
Cited by: 72
Author(s): Hirokazu Toju, Hirotoshi Sato, Satoshi Yamamoto, Kohmei Kadowaki, Akifumi S. Tanabe, Shogo Yazawa, Osamu Nishimura, Kiyokazu Agata
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0111315

Emissions from Pre-Hispanic Metallurgy in the South American Atmosphere
Cited by: 35
Author(s): François De Vleeschouwer, Heleen Vanneste, Dmitri Mauquoy, Natalia Piotrowska, Fernando Torrejón, Thomas P. Roland, Ariel Stein, Gaël Le Roux
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0086566

Diversity and Spatial Structure of Belowground Plant–Fungal Symbiosis in a Mixed Subtropical Forest of Ectomycorrhizal and Arbuscular Mycorrhizal Plants
Cited by: 67
Author(s): Hirokazu Toju, Hirotoshi Sato, Akifumi S. Tanabe
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0096363

Spatial Segregation and Aggregation of Ectomycorrhizal and Root-Endophytic Fungi in the Seedlings of Two Quercus Species
Cited by: 28
Author(s): Satoshi Yamamoto, Hirotoshi Sato, Akifumi S. Tanabe, Amane Hidaka, Kohmei Kadowaki, Hirokazu Toju
Software Mentions: 2
Published: over 10 years ago

10.3390/microorganisms9020355

Landscape Setting Drives the Microbial Eukaryotic Community Structure in Four Swedish Mountain Lakes over the Holocene
Cited by: 4
Author(s): Eric Capo, Sofia Ninnes, Isabelle Domaizon, Stefan Bertilsson, Christian Bigler, Xiaoru Wang, Richard Bindler, Johan Rydberg
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12866-016-0660-4

Changes of diet and dominant intestinal microbes in farmland frogs
Cited by: 57
Author(s): Chun Wen Chang, Bing Huang, Si Min Lin, C. C. Huang, Pei Chun Liao
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-019-50897-4

Enhanced glacial discharge from the eastern Antarctic Peninsula since the 1700s associated with a positive Southern Annular Mode
Cited by: 24
Author(s): William A. Dickens, Gerhard Kuhn, Melanie J. Leng, Alastair G C Graham, Julian A. Dowdeswell, Michael P. Meredith, C. D. Hillenbrand, Dominic A. Hodgson, Roberts Sj, Hilary J. Sloane, James A Smith
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0083284

Remnant Trees Affect Species Composition but Not Structure of Tropical Second-Growth Forest
Cited by: 51
Author(s): Manette E. Sandor, Robin L. Chazdon
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0155446

Coastal Evolution in a Mediterranean Microtidal Zone: Mid to Late Holocene Natural Dynamics and Human Management of the Castelló Lagoon, NE Spain
Cited by: 27
Author(s): Ana Ejarque, Ramón Julià, Jane M. Reed, Francesc Mesquita‐Joanes, Javier Marco-Barba, Santiago Riera
Software Mentions: 1
Published: over 8 years ago

10.1038/s41377-020-0245-8

Parallelized volumetric fluorescence microscopy with a reconfigurable coded incoherent light-sheet array
Cited by: 34
Author(s): Yu-Xuan Ren, Jianglai Wu, Queenie T. K. Lai, H. M. Lai, Dickson M. D. Siu, Wutian Wu, Kenneth K. Y. Wong, Kevin K. Tsia
Software Mentions: 1
Published: almost 5 years ago

10.7717/peerj.6147

The effects of afforestation on soil bacterial communities in temperate grassland are modulated by soil chemical properties
Cited by: 13
Author(s): Shu Wu, Bing Huang, Jian Gao, Siqi Wang, Pei Chun Liao
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0022376

Ecosystem Resilience and Threshold Response in the Galápagos Coastal Zone
Cited by: 25
Author(s): Alistair W. R. Seddon, Cynthia A. Froyd, Melanie J. Leng, Glenn A. Milne, Katherine J. Willis
Software Mentions: 1
Published: over 13 years ago

10.1107/S2053273315001503

X-ray investigation of lateral hetero-structures of inversion domains in LiNbO3, KTiOPO4and KTiOAsO4
Cited by: 2
Author(s): T. Lyford, Stephen P. Collins, Paul F. Fewster, P. A. Thomas
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0088709

Migration Patterns of Subgenus Alnus in Europe since the Last Glacial Maximum: A Systematic Review
Cited by: 41
Author(s): Jan Douda, Jana Doudová, Alena Drašnarová, Petr Kuneš, Věra Hadincová, Karol Krak, Petr Zákravský, Bohumil Mandák
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0121517

The Palaeoenvironmental Impact of Prehistoric Settlement and Proto-Historic Urbanism: Tracing the Emergence of the Oppidum of Corent, Auvergne, France
Cited by: 23
Author(s): Paul M. Ledger, Yannick Miras, Matthieu Poux, Pierre Yves Milcent
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-018-25162-9

Mineral dust as a driver of carbon accumulation in northern latitudes
Cited by: 21
Author(s): Malin E. Kylander, Antonio Martínez Cortizas, Richard Bindler, Joeri Kaal, Jenny K. Sjöström, Sophia V. Hansson, Noemí Sánchez, Sarah L. Greenwood, Kerry Gallagher, Johan Rydberg, Carl‐Magnus Mörth, Sébastien Rauch
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-021-92900-x

Severe Little Ice Age drought in the midcontinental United States during the Mississippian abandonment of Cahokia
Cited by: 12
Author(s): David P. Pompeani, Broxton W. Bird, Jeremy J. Wilson, William P. Gilhooly, Aubrey L. Hillman, Matthew S. Finkenbinder, Mark B. Abbott
Software Mentions: 1
Published: over 3 years ago