Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

cran projects 6,234

cran: gProfileR
Interface to the 'g:Profiler' Toolkit
Papers that mentioned: 56
cran: SuperLearner
Super Learner Prediction
Papers that mentioned: 56
cran: HH
Statistical Analysis and Data Display: Heiberger and Holland
Papers that mentioned: 55
cran: BAMMtools
Analysis and Visualization of Macroevolutionary Dynamics on Phylogenetic Trees
Papers that mentioned: 55
cran: GD
Geographical Detectors for Assessing Spatial Factors
Papers that mentioned: 55
cran: cocor
Comparing Correlations
Papers that mentioned: 55
cran: SAVE
Papers that mentioned: 55
cran: PMA
Penalized Multivariate Analysis
Papers that mentioned: 55
cran: TDA
Statistical Tools for Topological Data Analysis
Papers that mentioned: 55
cran: LSD
Lots of Superior Depictions
Papers that mentioned: 55
cran: BAS
Bayesian Variable Selection and Model Averaging using Bayesian Adaptive Sampling
Papers that mentioned: 55
cran: CGE
Computing General Equilibrium
Papers that mentioned: 55
cran: statmod
Statistical Modeling
Papers that mentioned: 55
cran: random
True Random Numbers using RANDOM.ORG
Papers that mentioned: 54
cran: org
Organising Projects
Papers that mentioned: 54
cran: Cubist
Rule- And Instance-Based Regression Modeling
Papers that mentioned: 54
cran: MiST
Mixed effects Score Test for continuous outcomes
Papers that mentioned: 54
cran: lordif
Logistic Ordinal Regression Differential Item Functioning using IRT
Papers that mentioned: 54
cran: varSelRF
Variable Selection using Random Forests
Papers that mentioned: 53
cran: rsem
Robust Structural Equation Modeling with Missing Data and Auxiliary Variables
Papers that mentioned: 53
cran: MCM
Estimating and Testing Intergenerational Social Mobility Effect
Papers that mentioned: 53
cran: Publish
Format Output of Various Routines in a Suitable Way for Reports and Publication
Papers that mentioned: 53
cran: EPP
Evaluation of Proximity Programs
Papers that mentioned: 53
cran: lsr
Companion to "Learning Statistics with R"
Papers that mentioned: 53
cran: PCL
Proximal Causal Learning
Papers that mentioned: 53
cran: tree
Classification and Regression Trees
Papers that mentioned: 53
cran: ggridges
Ridgeline Plots in 'ggplot2'
Papers that mentioned: 53
cran: beeswarm
The Bee Swarm Plot, an Alternative to Stripchart
Papers that mentioned: 52
cran: caTools
Tools: Moving Window Statistics, GIF, Base64, ROC AUC, etc
Papers that mentioned: 52
cran: network
Classes for Relational Data
Papers that mentioned: 51
cran: CP
Conditional Power Calculations
Papers that mentioned: 51
cran: RankAggreg
Weighted Rank Aggregation
Papers that mentioned: 51
cran: popbio
Construction and Analysis of Matrix Population Models
Papers that mentioned: 51
cran: forecast
Forecasting Functions for Time Series and Linear Models
Papers that mentioned: 51
cran: CIM
Compositional Impact of Migration
Papers that mentioned: 51
cran: Rmisc
Ryan Miscellaneous
Papers that mentioned: 51
cran: CCM
Correlation Classification Method
Papers that mentioned: 51
cran: BCT
Bayesian Context Trees for Discrete Time Series
Papers that mentioned: 51
cran: mapdata
Extra Map Databases
Papers that mentioned: 50
cran: hier.part
Hierarchical Partitioning
Papers that mentioned: 50
cran: io
A Unified Framework for Input-Output Operations in R
Papers that mentioned: 50
cran: foreach
Provides Foreach Looping Construct
Papers that mentioned: 50
cran: purrr
Functional Programming Tools
Papers that mentioned: 50
cran: SLIDE
Single Cell Linkage by Distance Estimation is SLIDE
Papers that mentioned: 50
cran: dplR
Dendrochronology Program Library in R
Papers that mentioned: 50
cran: freesurfer
Wrapper Functions for 'Freesurfer'
Papers that mentioned: 50
cran: RWeka
R/Weka Interface
Papers that mentioned: 50
cran: dbscan
Density-Based Spatial Clustering of Applications with Noise (DBSCAN) and Related Algorithms
Papers that mentioned: 49
cran: regplot
Enhanced Regression Nomogram Plot
Papers that mentioned: 49
cran: visNetwork
Network Visualization using 'vis.js' Library
Papers that mentioned: 49
cran: BED
Biological Entity Dictionary (BED)
Papers that mentioned: 49
cran: ggseqlogo
A 'ggplot2' Extension for Drawing Publication-Ready Sequence Logos
Papers that mentioned: 49
cran: dynamicTreeCut
Methods for Detection of Clusters in Hierarchical Clustering Dendrograms
Papers that mentioned: 49
cran: coloc
Colocalisation Tests of Two Genetic Traits
Papers that mentioned: 49
cran: CCP
Significance Tests for Canonical Correlation Analysis (CCA)
Papers that mentioned: 49
cran: RAPTOR
Row and Position Tracheid Organizer
Papers that mentioned: 48
cran: ggdendro
Create Dendrograms and Tree Diagrams Using 'ggplot2'
Papers that mentioned: 48
cran: dartR
Importing and Analysing 'SNP' and 'Silicodart' Data Generated by Genome-Wide Restriction Fragment Analysis
Papers that mentioned: 48
cran: plus
Penalized Linear Unbiased Selection
Papers that mentioned: 48
cran: ggtern
An Extension to 'ggplot2', for the Creation of Ternary Diagrams
Papers that mentioned: 48
cran: SWIM
Scenario Weights for Importance Measurement
Papers that mentioned: 48
cran: LPS
Linear Predictor Score, for Binary Inference from Multiple Continuous Variables
Papers that mentioned: 48
cran: RAT
Research Assessment Tools
Papers that mentioned: 48
cran: mrbayes
Bayesian Summary Data Models for Mendelian Randomization Studies
Papers that mentioned: 48
cran: gdata
Various R Programming Tools for Data Manipulation
Papers that mentioned: 47
cran: plot3D
Plotting Multi-Dimensional Data
Papers that mentioned: 47
cran: minimap
Create Tile Grid Maps
Papers that mentioned: 47
cran: ILS
Interlaboratory Study
Papers that mentioned: 47
cran: MetaCycle
Evaluate Periodicity in Large Scale Data
Papers that mentioned: 47
cran: scan
Single-Case Data Analyses for Single and Multiple Baseline Designs
Papers that mentioned: 47
cran: tibble
Simple Data Frames
Papers that mentioned: 47
cran: DPP
Inference of Parameters of Normal Distributions from a Mixture of Normals
Papers that mentioned: 47
cran: ARTool
Aligned Rank Transform
Papers that mentioned: 47
cran: eulerr
Area-Proportional Euler and Venn Diagrams with Ellipses
Papers that mentioned: 47
cran: EPT
Ensemble Patch Transform, Visualization and Decomposition
Papers that mentioned: 47
cran: phylolm
Phylogenetic Linear Regression
Papers that mentioned: 47
cran: pro
Point-Process Response Model for Optogenetics
Papers that mentioned: 47
cran: ROI
R Optimization Infrastructure
Papers that mentioned: 47
cran: Observation
Collect and Process Physical Activity Direct Observation Data
Papers that mentioned: 47
cran: lcmm
Extended Mixed Models Using Latent Classes and Latent Processes
Papers that mentioned: 46
cran: gdistance
Distances and Routes on Geographical Grids
Papers that mentioned: 46
cran: LAM
Some Latent Variable Models
Papers that mentioned: 46
cran: matrixStats
Functions that Apply to Rows and Columns of Matrices (and to Vectors)
Papers that mentioned: 46
cran: robvis
Visualize the Results of Risk-of-Bias (ROB) Assessments
Papers that mentioned: 46
cran: simr
Power Analysis for Generalised Linear Mixed Models by Simulation
Papers that mentioned: 46
cran: gee
Generalized Estimation Equation Solver
Papers that mentioned: 45
cran: ks
Kernel Smoothing
Papers that mentioned: 45
cran: DAP
Discriminant Analysis via Projections
Papers that mentioned: 45
cran: heatmaply
Interactive Cluster Heat Maps Using 'plotly' and 'ggplot2'
Papers that mentioned: 45
cran: aod
Analysis of Overdispersed Data
Papers that mentioned: 45
cran: nlstools
Tools for Nonlinear Regression Analysis
Papers that mentioned: 45
cran: PST
Probabilistic Suffix Trees and Variable Length Markov Chains
Papers that mentioned: 45
cran: ORION
Ordinal Relations
Papers that mentioned: 45
cran: lawstat
Tools for Biostatistics, Public Policy, and Law
Papers that mentioned: 45
cran: zoo
S3 Infrastructure for Regular and Irregular Time Series (Z's Ordered Observations)
Papers that mentioned: 45
cran: tracer
Slick Call Stacks
Papers that mentioned: 45
cran: CTD
A Method for 'Connecting The Dots' in Weighted Graphs
Papers that mentioned: 44
cran: pastecs
Package for Analysis of Space-Time Ecological Series
Papers that mentioned: 44
cran: ISAT
Extract Cell Density and Nearest Distance Based on 'PerkinElmer InForm' Software Output
Papers that mentioned: 44
cran: fossil
Palaeoecological and Palaeogeographical Analysis Tools
Papers that mentioned: 44