cran: dartR | Projects | Ecosyste.ms: Papers

10.1002/ece3.7625

Genetic differentiation and signatures of local adaptation revealed by RADseq for a highly dispersive mud crab Scylla olivacea (Herbst, 1796) in the Sulu Sea
Cited by: 4
Author(s): Michael John Mendiola, Rachel Ravago-Gotanco
Software Mentions: 12
Published: over 3 years ago

10.1371/journal.pone.0236084

Mating system is correlated with immunogenetic diversity in sympatric species of Peromyscine mice
Cited by: 0
Author(s): Jesyka Meléndez‐Rosa, Ke Bi, Eileen A. Lacey
Software Mentions: 9
Published: over 4 years ago

10.1002/ece3.7211

Investigating the morphological and genetic divergence of arctic char ( Salvelinus alpinus) populations in lakes of arctic Alaska
Cited by: 3
Author(s): Stephen L. Klobucar, Jessica A. Rick, Elizabeth G. Mandeville, Catherine E. Wagner, Phaedra Budy
Software Mentions: 8
Published: almost 4 years ago

10.3389/fgene.2019.01221

Increased Adaptive Variation Despite Reduced Overall Genetic Diversity in a Rapidly Adapting Invader
Cited by: 39
Author(s): D. Selechnik, Mark F. Richardson, Richard Shine, Jayna L. DeVore, Simon Ducatez, Lee A. Rollins
Software Mentions: 8
Published: about 5 years ago

10.1099/mgen.0.000627

Current population structure and pathogenicity patterns of Ascochyta rabiei in Australia
Cited by: 8
Author(s): Ido Bar, Prabhakaran Thanjavur Sambasivam, Jenny Davidson, Lina M Farfan-Caceres, Robert C. Lee, Kristy Hobson, Kevin Moore, R Ford
Software Mentions: 8
Published: over 3 years ago

10.1002/ece3.7428

An endangered flightless grasshopper with strong genetic structure maintains population genetic variation despite extensive habitat loss
Cited by: 15
Author(s): Ary A. Hoffmann, Vanessa L. White, Moshe Jasper, Hiromi Yagui, Steve Sinclair, Michael R. Kearney
Software Mentions: 8
Published: over 3 years ago

10.1093/aobpla/plab049

Genetic diversity and population structure of a global invader Mayweed chamomile (Anthemis cotula): management implications
Cited by: 2
Author(s): Subodh Adhikari, Samuel R. Revolinski, Sanford D. Eigenbrode, Ian C. Burke
Software Mentions: 7
Published: over 3 years ago

10.1016/j.heliyon.2021.e06160

Genomic evidence supports the introgression between two sympatric stickleback species inhabiting the White Sea basin
Cited by: 4
Author(s): Artem Nedoluzhko, Fedor Sharko, Svetlana Tsygankova, Eugenia Boulygina, Amina S. Ibragimova, Anton Teslyuk, Jorge Galindo-Villegas, С. М. Расторгуев
Software Mentions: 7
Published: almost 4 years ago

10.1002/ece3.6802

Concordant geographic and genetic structure revealed by genotyping‐by‐sequencing in a New Zealand marine isopod
Cited by: 7
Author(s): William S. Pearman, Sarah J. Wells, Olin K. Silander, Nikki E. Freed, James Dale
Software Mentions: 7
Published: about 4 years ago

10.1038/s41598-020-76364-z

Genetic evidence supports three previously described species of greater glider, Petauroides volans, P. minor, and P. armillatus
Cited by: 21
Author(s): Denise C. McGregor, Amanda Padovan, Arthur Georges, Andrew K. Krockenberger, Hwan Jin Yoon, Kara N. Youngentob
Software Mentions: 7
Published: about 4 years ago

10.1038/s41598-020-67397-5

Genome-wide patterns of differentiation over space and time in the Queensland fruit fly
Cited by: 14
Author(s): Ángel David Popa-Báez, Renee A. Catullo, Siu Fai Lee, Heng Lin Yeap, Roslyn Mourant, Michael Frommer, J. A. Sved, Emilie Cameron, Owain Edwards, Phillip W. Taylor, John G. Oakeshott
Software Mentions: 7
Published: over 4 years ago

10.1002/ece3.6927

Disjunction between canola distribution and the genetic structure of its recently described pest, the canola flower midge (Contarinia brassicola)
Cited by: 5
Author(s): Erin O. Campbell, Julian R. Dupuis, Jennifer Holowachuk, Shane Hladun, Meghan A. Vankosky, Boyd A. Mori
Software Mentions: 6
Published: about 4 years ago

10.1371/journal.pone.0239122

DArTSeq SNP-based markers revealed high genetic diversity and structured population in Ethiopian cowpea [Vigna unguiculata (L.) Walp] germplasms
Cited by: 26
Author(s): Selamawit Ketema, Bizuayehu Tesfaye, Gemechu Keneni, Berhanu Amsalu Fenta, Ermias Assefa, Nicolas Greliche, Eunice Machuka, Nasser Yao
Software Mentions: 6
Published: about 4 years ago

10.1186/s12864-019-5806-y

From reference genomes to population genomics: comparing three reference-aligned reduced-representation sequencing pipelines in two wildlife species
Cited by: 44
Author(s): Belinda Wright, Katherine A. Farquharson, Elspeth A. McLennan, Katherine Belov, Carolyn J. Hogg, Catherine E. Grueber
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.ppat.1009313

Diverging patterns of introgression from Schistosoma bovis across S. haematobium African lineages
Cited by: 24
Author(s): Olivier Rey, Ève Toulza, Cristian Chaparro, Jean‐François Allienne, Julien Kincaid-Smith, Eglantine Mathieu‐Bégné, Fiona Allan, David Rollinson, Bonnie L. Webster, Jérôme Boissier
Software Mentions: 5
Published: almost 4 years ago

10.1111/eva.12875

Weak genetic structure despite strong genomic signal in lesser sandeel in the North Sea
Cited by: 16
Author(s): Belén Jiménez‐Mena, Alan Le Moan, Asbjørn Christensen, Mikael van Deurs, Henrik Mosegaard, Jakob Hemmer‐Hansen, Dorte Bekkevold
Software Mentions: 5
Published: about 5 years ago

10.1002/ece3.7403

Genomic divergence in sympatry indicates strong reproductive barriers and cryptic species within Eucalyptus salubris
Cited by: 9
Author(s): Rachel M. Binks, Dorothy A. Steane, Margaret Byrne
Software Mentions: 4
Published: almost 4 years ago

10.1038/s41598-020-58398-5

Phylogenomic Perspective on a Unique Mycobacterium bovis Clade Dominating Bovine Tuberculosis Infections among Cattle and Buffalos in Northern Brazil
Cited by: 8
Author(s): Marília Lima da Conceição, Emilyn Costa Conceição, Ismari Perini Furlaneto, Sandro Patroca da Silva, Arthur Emil dos Santos Guimarães, Pedro Gomes, María Laura Boschiroli, Lorraine Michelet, Thomas A. Kohl, Katharina Kranzer, Loreno da Costa Francez, Luana Nepomuceno Gondim Costa Lima, Isabel Portugal, João Perdigão, Karla Valéria Batista Lima
Software Mentions: 4
Published: almost 5 years ago

10.7717/peerj.7971

Crypsis and convergence: integrative taxonomic revision of the Gehyra australis group (Squamata: Gekkonidae) from northern Australia
Cited by: 9
Author(s): Paul M. Oliver, Audrey Miranda Prasetya, Leonardo G. Tedeschi, Jéssica Fenker, Ryan J. Ellis, Craig Moritz
Software Mentions: 4
Published: almost 5 years ago

10.3389/fgene.2020.556267

Genome Complexity Reduction High-Throughput Genome Sequencing of Green Iguana (Iguana iguana) Reveal a Paradigm Shift in Understanding Sex-Chromosomal Linkages on Homomorphic X and Y Sex Chromosomes
Cited by: 13
Author(s): Tassika Koomgun, Nararat Laopichienpong, Worapong Singchat, Thitipong Panthum, Rattanin Phatcharakullawarawat, Ekaphan Kraichak, Siwapech Sillapaprayoon, Syed Farhan Ahmad, Narongrit Muangmai, Surin Peyachoknagul, Prateep Duengkae, Tariq Ezaz, Kornsorn Srikulnath
Software Mentions: 4
Published: about 4 years ago

10.1111/eva.13234

Association of putatively adaptive genetic variation with climatic variables differs between a parasite and its host
Cited by: 5
Author(s): Sheree J. Walters, Todd Robinson, Margaret Byrne, Grant Wardell‐Johnson, Paul Nevill
Software Mentions: 4
Published: over 3 years ago

10.1002/evl3.184

The geographic mosaic of arms race coevolution is closely matched to prey population structure
Cited by: 19
Author(s): Michael T. J. Hague, Amber N. Stokes, Chris R. Feldman, Edmund D. Brodie
Software Mentions: 4
Published: over 4 years ago

10.1073/pnas.2017384118

Fifty million years of beetle evolution along the Antarctic Polar Front
Cited by: 17
Author(s): Helena P. Baird, Seunggwan Shin, Rolf G. Oberprieler, M. Hullé, Philippe Vernon, Katherine L. Moon, Richard H. Adams, Duane D. McKenna, Steven Loudon Chown
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-021-85735-z

The phylogeographic history of Krascheninnikovia reflects the development of dry steppes and semi-deserts in Eurasia
Cited by: 9
Author(s): Anna Seidl, Karin Tremetsberger, Simon Pfanzelt, Frank R. Blattner, Barbara Neuffer, Nikolai Friesen, Herbert Hurka, А. И. Шмаков, Batlai Oyuntsetseg, Anže Žerdoner Čalasan, Polina V. Vesselova, Karl‐Georg Bernhardt
Software Mentions: 4
Published: almost 4 years ago

10.1038/s41437-021-00455-4

Genomic methods reveal independent demographic histories despite strong morphological conservatism in fish species
Cited by: 2
Author(s): Jessika M. M. Neves, Zachary J Nolen, Nídia Noemi Fabré, Tamí Mott, Ricardo José Garcia Pereira
Software Mentions: 4
Published: over 3 years ago

10.3389/fpls.2021.692463

Genome-Wide Assessment of Population Structure and Genetic Diversity of the Global Finger Millet Germplasm Panel Conserved at the ICRISAT Genebank
Cited by: 3
Author(s): C. Backiyalakshmi, Mani Vetriventhan, Santosh Deshpande, C. Babu, Victor Allan, D. Naresh, Rajeev Gupta, V. C. R. Azevedo
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0253600

Genetic diversity and population structure analysis of bambara groundnut (Vigna subterrenea L) landraces using DArT SNP markers
Cited by: 15
Author(s): Charles U. Uba, Happiness Ogba Oselebe, Agajie Tesfaye, Wosene Gebreselassie Abtew
Software Mentions: 3
Published: over 3 years ago

10.1098/rsos.190233

Taxonomy and conservation of grassland earless dragons: new species and an assessment of the first possible extinction of a reptile on mainland Australia
Cited by: 11
Author(s): Jane Melville, Kirilee Chaplin, Mark N. Hutchinson, Joanna Sumner, Bernd Gruber, Anna J. MacDonald, Stephen D. Sarre
Software Mentions: 3
Published: over 5 years ago

10.3390/genes12091327

Genome-Wide SNPs Detect Hybridisation of Marsupial Gliders (Petaurus breviceps breviceps × Petaurus norfolcensis) in the Wild
Cited by: 7
Author(s): Monica Knipler, Mark Dowton, Katarina M. Mikac
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0205862

Translocation, genetic structure and homing ability confirm geographic barriers disrupt saltwater crocodile movement and dispersal
Cited by: 17
Author(s): Yusuke Fukuda, Grahame J. W. Webb, Charlie Manolis, Garry Lindner, Sam C. Banks
Software Mentions: 3
Published: over 5 years ago

10.1002/ece3.5012

Accounting for kin sampling reveals genetic connectivity in Tasmanian and New Zealand school sharks, Galeorhinus galeus
Cited by: 12
Author(s): Floriaan Devloo‐Delva, Grégory E. Maes, Sebastián Hernández, Jaime D. McAllister, Rasanthi M. Gunasekera, Peter M. Grewe, Robin B. Thomson, Pierre Feutry
Software Mentions: 3
Published: almost 6 years ago

10.3389/fgene.2021.702822

Genome-Wide Analyses Reveal the Genetic Architecture and Candidate Genes of Indicine, Taurine, Synthetic Crossbreds, and Locally Adapted Cattle in Brazil
Cited by: 8
Author(s): Lucas Lima Verardo, Fabyano F. Silva, M. A. Machado, J. C. do C. Panetto, Daniele Ribeiro de Lima Reis Faza, Pamela Itajara Otto, L. C. de A. Regitano, Luiz Otávio Campos da Silva, A. A. do Egito, Maria do Socorro Maués Albuquerque, Ricardo Zanella, Marcos Vinícius Gualberto Barbosa da Silva
Software Mentions: 2
Published: over 3 years ago

10.1186/s13104-021-05750-1

DArT-based evaluation of soybean germplasm from Polish Gene Bank
Cited by: 8
Author(s): E. Czembor, Jerzy H. Czembor, Radosław Suchecki, Nathan S. Watson-Haigh
Software Mentions: 2
Published: over 3 years ago

10.1002/ece3.7897

Establishing conservation units to promote recovery of two threatened freshwater mussel species (Bivalvia: Unionida: Potamilus )
Cited by: 7
Author(s): Chase H. Smith, Nathan A. Johnson, Clinton R. Robertson, Robert D. Doyle, Charles R. Randklev
Software Mentions: 2
Published: over 3 years ago

10.1002/ece3.6670

Comparative assessment of range‐wide patterns of genetic diversity and structure with SNPs and microsatellites: A case study with Iberian amphibians
Cited by: 18
Author(s): Miguel Camacho‐Sanchez, Guillermo Velo‐Antón, Jeffrey O. Hanson, Ana Veríssimo, Íñigo Martínez‐Solano, Adam Marques, Craig Moritz, Sílvia B. Carvalho
Software Mentions: 2
Published: over 4 years ago

10.1111/eva.13033

Extreme seascape drives local recruitment and genetic divergence in brooding and spawning corals in remote north‐west Australia
Cited by: 22
Author(s): Jim N. Underwood, Zoe T. Richards, Oliver Berry, Daniel Oades, Azton Howard, James Gilmour
Software Mentions: 2
Published: over 4 years ago

10.1111/eva.12913

Springtail phylogeography highlights biosecurity risks of repeated invasions and intraregional transfers among remote islands
Cited by: 15
Author(s): Helena P. Baird, Katherine L. Moon, Charlene Janion‐Scheepers, Steven L. Chown
Software Mentions: 2
Published: almost 5 years ago

10.1111/eva.12892

Genome‐wide SNPs resolve spatiotemporal patterns of connectivity within striped marlin (Kajikia audax), a broadly distributed and highly migratory pelagic species
Cited by: 19
Author(s): Nadya R Mamoozadeh, John E. Graves, Jan R. McDowell
Software Mentions: 2
Published: about 5 years ago

10.3389/fgene.2018.00438

Use of High Density Single Nucleotide Polymorphism (SNP) Arrays to Assess Genetic Diversity and Population Structure of Dairy Cattle in Smallholder Dairy Systems: The Case of Girinka Programme in Rwanda
Cited by: 10
Author(s): M. G. G. Chagunda, Fidalis D. N. Mujibi, Théogéne Dusingizimana, Olivier Kamana, Evans K. Cheruiyot, Okeyo Ally Mwai
Software Mentions: 2
Published: about 6 years ago

10.3390/genes12020252

High Genetic Diversity despite Conserved Karyotype Organization in the Giant Trahiras from Genus Hoplias (Characiformes, Erythrinidae)
Cited by: 4
Author(s): Francisco de Menezes Cavalcante Sassi, Manolo F. Perez, Vanessa Cristina Sales Oliveira, Geize Aparecida Deon, Fernando Henrique Santos de Souza, Pedro H. N. Ferreira, Ezequiel Aguiar de Oliveira, Terumi Hatanaka, Thomas Liehr, Luiz Antônio Carlos Bertollo, Marcelo de Bello Cioffi
Software Mentions: 2
Published: almost 4 years ago

10.3390/genes12050786

Population Genetics of the Invasive Red Fox, Vulpes vulpes, in South-Eastern Australia
Cited by: 0
Author(s): Kalynda M.-A. Watson, Katarina M. Mikac, Sibylle G. Schwab
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-020-58525-2

Fine-scale species distribution modelling and genotyping by sequencing to examine hybridisation between two narrow endemic plant species
Cited by: 11
Author(s): JE Ball, Todd Robinson, Grant Wardell‐Johnson, Jessica Bovill, Margaret Byrne, Paul Nevill
Software Mentions: 2
Published: almost 5 years ago

10.3390/ijms20174296

Deciphering the Evolutionary History of Arowana Fishes (Teleostei, Osteoglossiformes, Osteoglossidae): Insight from Comparative Cytogenomics
Cited by: 17
Author(s): Marcelo de Bello Cioffi, Petr Ráb, Tariq Ezaz, Luiz Antônio Carlos Bertollo, Sébastien Lavoué, Ezequiel Aguiar de Oliveira, Alexandr Sember, Wagner Franco Molina, Fernando Henrique Santos de Souza, Zuzana Majtánová, Thomas Liehr, Ahmed Al-Rikabi, Cássia Fernanda Yano, Patrik Ferreira Viana, Eliana Feldberg, Peter J. Unmack, Terumi Hatanaka, Alongklod Tanomtong, Manolo F. Perez
Software Mentions: 1
Published: over 5 years ago

10.1111/eva.13173

Using multiple sources during reintroduction of a locally extinct population benefits survival and reproduction of an endangered freshwater fish
Cited by: 11
Author(s): Maiko L. Lutz, Zeb Tonkin, Jian D. L. Yen, Glen Johnson, Brett A. Ingram, Joanne Sharley, Jarod Lyon, David G. Chapple, Paul Sunnucks, Alexandra Pavlova
Software Mentions: 1
Published: about 4 years ago

10.1002/ece3.7458

Pleistocene divergence in the absence of gene flow among populations of a viviparous reptile with intraspecific variation in sex determination
Cited by: 5
Author(s): Peta Hill, Erik Wapstra, Tariq Ezaz, Christopher P. Burridge
Software Mentions: 1
Published: almost 4 years ago

10.1002/ece3.8051

Assessment of genetic relationships among native and introduced Himalayan balsam ( Impatiens glandulifera ) plants based on genome profiling
Cited by: 3
Author(s): Helena Korpelainen, Sakina Elshibli
Software Mentions: 1
Published: over 3 years ago

10.1186/s12862-021-01852-3

Delimiting cryptic species within the brown-banded bamboo shark, Chiloscyllium punctatum in the Indo-Australian region with mitochondrial DNA and genome-wide SNP approaches
Cited by: 4
Author(s): Fahmi Fahmi, Ian R. Tibbetts, Michael B. Bennett, Christine L. Dudgeon
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-019-40865-3

Perspectives on the clonal persistence of presumed ‘ghost’ genomes in unisexual or allopolyploid taxa arising via hybridization
Cited by: 11
Author(s): Peter J. Unmack, Mark Adams, Jonas Bylemans, Christopher M. Hardy, Michael P. Hammer, Arthur Georges
Software Mentions: 1
Published: almost 6 years ago

Projects: cran: dartR

Papers Mentioning dartR 48