cran: BAMMtools | Projects | Ecosyste.ms: Papers

10.1186/s12862-020-01717-1

Climatic and topographic changes since the Miocene influenced the diversification and biogeography of the tent tortoise (Psammobates tentorius) species complex in Southern Africa
Cited by: 7
Author(s): Zhongning Zhao, Neil Heideman, Phillip Armand Bester, Adriaan Jordaan, Margaretha D. Hofmeyr
Software Mentions: 18
Published: over 3 years ago

10.1186/s12862-015-0570-3

Phylogenetic analyses suggest that diversification and body size evolution are independent in insects
Cited by: 19
Author(s): James Rainford, Michael Hofreiter, Peter J. Mayhew
Software Mentions: 8
Published: over 8 years ago

10.3389/fpls.2020.582422

Phylogenomics of the Andean Tetraploid Clade of the American Amaryllidaceae (Subfamily Amaryllidoideae): Unlocking a Polyploid Generic Radiation Abetted by Continental Geodynamics
Cited by: 7
Author(s): Alan W. Meerow, Elliot M. Gardner, Kyoko Nakamura
Software Mentions: 7
Published: over 3 years ago

10.1002/ece3.6994

Ecological and morphological determinants of evolutionary diversification in Darwin's finches and their relatives
Cited by: 14
Author(s): Ashley M. Reaney, Yanis Bouchenak‐Khelladi, Joe Tobias, Arhat Abzhanov
Software Mentions: 7
Published: over 3 years ago

10.1371/journal.pcbi.1007323

Using text-mined trait data to test for cooperate-and-radiate co-evolution between ants and plants
Cited by: 16
Author(s): Katrina M. Kaur, Pierre‐Jean G. Malé, E. J. Spence, Crisanto Gómez, Megan E. Frederickson
Software Mentions: 6
Published: over 4 years ago

10.1186/s12862-018-1244-8

Microhabitat change drives diversification in pholcid spiders
Cited by: 34
Author(s): Jonas Eberle, Dimitar Dimitrov, Alejandro Valdez‐Mondragón, Bernhard A. Huber
Software Mentions: 6
Published: over 5 years ago

10.1002/ece3.7450

Influence of landscape condition on relative abundance and body condition of two generalist freshwater turtle species
Cited by: 5
Author(s): Joel L. Mota, Donald J. Brown, Danielle M. Canning, Sara M. Crayton, Darien N. Lozon, Alissa L. Gulette, James T. Anderson, Ivana Mali, Brian E. Dickerson, Michael R. J. Forstner, Mark Watson, Thomas K. Pauley
Software Mentions: 6
Published: about 3 years ago

10.3389/fgene.2014.00362

Patterns of diversification amongst tropical regions compared: a case study in Sapotaceae
Cited by: 31
Author(s): Kate Armstrong, Graham N. Stone, James A. Nicholls, Eugenio Valderrama, Arne A. Anderberg, Jenny E. E. Smedmark, Laurent Gautier, Yamama Naciri, Richard I. Milne, James E. Richardson
Software Mentions: 5
Published: over 9 years ago

10.1038/s41598-019-57144-w

The evolutionary diversity of locomotor innovation in rodents is not linked to proximal limb morphology
Cited by: 24
Author(s): Brandon P Hedrick, Blake V. Dickson, Elizabeth R. Dumont, Stephanie E. Pierce
Software Mentions: 5
Published: over 4 years ago

10.1038/s41598-019-44881-1

Accelerated diversifications in three diverse families of morphologically complex lichen-forming fungi link to major historical events
Cited by: 9
Author(s): Jen‐Pan Huang, Ekaphan Kraichak, Steven D. Leavitt, Matthew P. Nelsen, H. Thorsten Lumbsch
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pbio.2002792

Seed size and its rate of evolution correlate with species diversification across angiosperms
Cited by: 55
Author(s): Javier Igea, Eleanor F. Miller, Alexander S. T. Papadopulos, Andrew J. Tanentzap
Software Mentions: 5
Published: almost 7 years ago

10.1534/g3.119.400560

Genome Size Evolution Differs BetweenDrosophilaSubgenera with Striking Differences in Male and Female Genome Size inSophophora
Cited by: 6
Author(s): Carl E. Hjelmen, Heath Blackmon, Valerie Renee Holmes, Crystal Burrus, J. Spencer Johnston
Software Mentions: 5
Published: over 4 years ago

10.3389/fpls.2020.00320

Divide to Conquer: Evolutionary History of Allioideae Tribes (Amaryllidaceae) Is Linked to Distinct Trends of Karyotype Evolution
Cited by: 17
Author(s): Lucas Costa, Horace José Jimenez, Reginaldo de Carvalho, Jefferson Guedes de Carvalho-Sobrinho, Inelia Escobar, Gustavo Souza
Software Mentions: 5
Published: about 4 years ago

10.1038/s41598-019-55894-1

Behavioral evolution contributes to hindbrain diversification among Lake Malawi cichlid fish
Cited by: 9
Author(s): Ryan A. York, Alexandra E. Byrne, Kawther Abdilleh, Chinar Patil, Todd Streelman, Thomas E. Finger, Russell D. Fernald
Software Mentions: 5
Published: over 4 years ago

10.1038/s41598-018-24120-9

Testing the impact of effective population size on speciation rates – a negative correlation or lack thereof in lichenized fungi
Cited by: 5
Author(s): Jen‐Pan Huang, Steven D. Leavitt, H. Thorsten Lumbsch
Software Mentions: 4
Published: about 6 years ago

10.1111/ele.13476

Angiosperm speciation cools down in the tropics
Cited by: 71
Author(s): Javier Igea, Andrew J. Tanentzap
Software Mentions: 4
Published: over 4 years ago

10.1002/ece3.6008

The uplift of the Qinghai–Tibet Plateau and glacial oscillations triggered the diversification of Tetraogallus (Galliformes, Phasianidae)
Cited by: 5
Author(s): Li Ding, Jicheng Liao, Naifa Liu
Software Mentions: 4
Published: over 4 years ago

10.1073/pnas.2017384118

Fifty million years of beetle evolution along the Antarctic Polar Front
Cited by: 17
Author(s): Helena P. Baird, Seunggwan Shin, Rolf G. Oberprieler, M. Hullé, Philippe Vernon, Katherine L. Moon, Richard H. Adams, Duane D. McKenna, Steven Loudon Chown
Software Mentions: 4
Published: almost 3 years ago

10.1098/rspb.2018.0640

The evolution of fungal substrate specificity in a widespread group of crustose lichens
Cited by: 17
Author(s): Philipp Resl, Fernando Fernández-Mendoza, Helmut Mayrhofer, Toby Spribille
Software Mentions: 4
Published: over 5 years ago

10.3390/genes10050338

Diversification of Transposable Elements in Arthropods and Its Impact on Genome Evolution
Cited by: 24
Author(s): Changcheng Wu, Jian Lü
Software Mentions: 4
Published: about 5 years ago

10.1186/s12862-021-01764-2

New Guinean orogenic dynamics and biota evolution revealed using a custom geospatial analysis pipeline
Cited by: 10
Author(s): Emmanuel F. A. Toussaint, L.B. White, Helena Shaverdo, Athena Lam, Suriani Surbakti, Rawati Panjaitan, Bob Sumoked, Thomas von Rintelen, Katayo Sagata, Michael Balke
Software Mentions: 3
Published: about 3 years ago

10.1186/s12862-021-01797-7

Museomics and phylogenomics with protein-encoding ultraconserved elements illuminate the evolution of life history and phallic morphology of flesh flies (Diptera: Sarcophagidae)
Cited by: 10
Author(s): Eliana Buenaventura
Software Mentions: 3
Published: about 3 years ago

10.1186/s12862-019-1344-0

Live fast, diversify non-adaptively: evolutionary diversification of exceptionally short-lived annual killifishes
Cited by: 13
Author(s): Joshua W. Lambert, Martin Reichard, Daniel Pincheira‐Donoso
Software Mentions: 3
Published: over 5 years ago

10.7717/peerj.3194

Arrival and diversification of mabuyine skinks (Squamata: Scincidae) in the Neotropics based on a fossil-calibrated timetree
Cited by: 10
Author(s): Anieli Guirro Pereira, Carlos G. Schrago
Software Mentions: 3
Published: about 7 years ago

10.3390/plants8070210

Phylogenetic Reconstruction and Divergence Time Estimation of Blumea DC. (Asteraceae: Inuleae) in China Based on nrDNA ITS and cpDNA trnL-F Sequences
Cited by: 6
Author(s): Yingbo Zhang, Yuan Yuan, Yuxin Pang, Fu-Lai Yu, Chao Yuan, Dan Wang, Xuan Hu
Software Mentions: 3
Published: almost 5 years ago

10.3389/fmicb.2017.00127

Evolutionary Roots and Diversification of the Genus Aeromonas
Cited by: 11
Author(s): Ariadna Sanglas, Vicenta Albarral, Maribel Farfán, J. Gaspar Lorén, M. Carmen Fusté
Software Mentions: 3
Published: over 7 years ago

10.1111/jeb.12979

The impact of rate heterogeneity on inference of phylogenetic models of trait evolution
Cited by: 34
Author(s): Angela M. Chira, Gavin H. Thomas
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-017-03107-y

Phylogenetic evidence that both ancient vicariance and dispersal have contributed to the biogeographic patterns of anchialine cave shrimps
Cited by: 29
Author(s): José A. Jurado‐Rivera, Joan Pons, Fernando Álvarez, Alejandro Botello, W. F. Humphreys, Timothy J. Page, Thomas M. Iliffe, Endre Willassen, Kenneth Meland, Carlos Juan, Damià Jaume
Software Mentions: 3
Published: almost 7 years ago

10.1093/sysbio/syz059

Macroevolutionary Analyses Suggest That Environmental Factors, Not Venom Apparatus, Play Key Role in Terebridae Marine Snail Diversification
Cited by: 7
Author(s): Maria Vittoria Modica, Juliette Gorson, Alexander Fedosov, Gavin Malcolm, Yves Terryn, Nicolas Puillandre, Mandë Holford
Software Mentions: 3
Published: over 4 years ago

10.7717/peerj.5495

What affects power to estimate speciation rate shifts?
Cited by: 13
Author(s): Ullasa Kodandaramaiah, Gopal Murali
Software Mentions: 2
Published: almost 6 years ago

10.1002/ece3.2688

Out of Africa: Biogeography and diversification of the pantropical pond skater genusLimnogonusStål, 1868 (Hemiptera: Gerridae)
Cited by: 10
Author(s): Zhen Ye, Yahui Zhen, Yanyan Zhou, Wenjun Bu
Software Mentions: 2
Published: over 7 years ago

10.1093/sysbio/syv007

Multilocus Species Trees Show the Recent Adaptive Radiation of the Mimetic Heliconius Butterflies
Cited by: 195
Author(s): Krzysztof M. Kozak, Niklas Wahlberg, Andrew F. E. Neild, Kanchon K. Dasmahapatra, James Mallet, Chris D. Jiggins
Software Mentions: 2
Published: over 9 years ago

10.1038/srep19208

Global patterns of insect diversification: towards a reconciliation of fossil and molecular evidence?
Cited by: 101
Author(s): Fabien L. Condamine, Matthew E. Clapham, Gaël J. Kergoat
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-020-78183-8

Out of India, thrice: diversification of Asian forest scorpions reveals three colonizations of Southeast Asia
Cited by: 7
Author(s): Stephanie F. Loria, Lorenzo Prendini
Software Mentions: 2
Published: over 3 years ago

10.3389/fgene.2018.00698

Morphological Innovations and Vast Extensions of Mountain Habitats Triggered Rapid Diversification Within the Species-Rich Irano-Turanian Genus Acantholimon (Plumbaginaceae)
Cited by: 18
Author(s): Farideh Moharrek, Isabel Sanmartín, Shahrokh Kazempour Osaloo, Gonzalo Nieto Feliner
Software Mentions: 2
Published: over 5 years ago

10.1038/srep37753

Selection for predation, not female fecundity, explains sexual size dimorphism in the orchid mantises
Cited by: 17
Author(s): Gavin J. Svenson, Sydney K. Brannoch, Henrique M. Rodrigues, James C. O’Hanlon, Werner Frank
Software Mentions: 2
Published: over 7 years ago

10.7554/eLife.38278

The lost world of Cuatro Ciénegas Basin, a relictual bacterial niche in a desert oasis
Cited by: 39
Author(s): Valeria Souza, Alejandra Moreno‐Letelier, Michael Travisano, Luis David Alcaraz, Gabriela Olmedo, Luis E. Eguiarte
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-017-05263-7

Environmentally driven extinction and opportunistic origination explain fern diversification patterns
Cited by: 85
Author(s): Samuli Lehtonen, Daniele Silvestro, Dirk Nikolaus Karger, Christopher R. Scotese, Hanna Tuomisto, Michael Kessler, Carlos Peña, Niklas Wahlberg, Alexandre Antonelli
Software Mentions: 2
Published: almost 7 years ago

10.1098/rsos.170862

Genome size variation in deep-sea amphipods
Cited by: 23
Author(s): Heather Ritchie, Alan J. Jamieson, Stuart B. Piertney
Software Mentions: 1
Published: almost 7 years ago

10.1038/srep10028

A Tale of Two Hyper-diversities: Diversification dynamics of the two largest families of lichenized fungi
Cited by: 49
Author(s): Ekaphan Kraichak, Pradeep K. Divakar, Ana Crespo, Steven D. Leavitt, Matthew P. Nelsen, Robert Lücking, H. Thorsten Lumbsch
Software Mentions: 1
Published: about 9 years ago

10.7717/peerj.4388

Evolutionary persistence inGunneraand the contribution of southern plant groups to the tropical Andes biodiversity hotspot
Cited by: 22
Author(s): Christine D. Bacon, Francisco J. Velásquez‐Puentes, Luis Felipe Hinojosa, Thomas Schwartz, Bengt Oxelman, Bernard E. Pfeil, Mary T. K. Arroyo, Livia Wanntorp, Alexandre Antonelli
Software Mentions: 1
Published: about 6 years ago

10.1186/s12862-017-1090-0

Total evidence phylogeny and evolutionary timescale for Australian faunivorous marsupials (Dasyuromorphia)
Cited by: 50
Author(s): Shimona Kealy, Robin M. D. Beck
Software Mentions: 1
Published: over 6 years ago

10.1186/s12862-019-1505-1

Phylogenomics resolves major relationships and reveals significant diversification rate shifts in the evolution of silk moths and relatives
Cited by: 35
Author(s): Chris A. Hamilton, Ryan A. St Laurent, Kelly M. Dexter, Ian J. Kitching, Jesse W. Breinholt, Andreas Zwick, Martijn J. T. N. Timmermans, Jesse R. Barber, Akito Y. Kawahara
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-021-88555-3

Exploring diversification drivers in golden orbweavers
Cited by: 1
Author(s): Eva Turk, Simona Kralj‐Fišer, Matjaž Kuntner
Software Mentions: 1
Published: about 3 years ago

10.3389/fpls.2021.650551

Polyploidy Expands the Range of Centaurium (Gentianaceae)
Cited by: 7
Author(s): Enrique Maguilla, Marcial Escudero, Vania Jiménez-Lobato, Zoila Díaz-Lifante, Cristina Andrés-Camacho, Juan Arroyo
Software Mentions: 1
Published: about 3 years ago

10.3389/fpls.2019.00055

Adjacency and Area Explain Species Bioregional Shifts in Neotropical Palms
Cited by: 8
Author(s): Cintia Freitas, Christine D. Bacon, Advaldo C. Souza-Neto, Rosane Garcia Collevatti
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2020.536135

Phylogeny, Diversification Rate, and Divergence Time of Agave sensu lato (Asparagaceae), a Group of Recent Origin in the Process of Diversification
Cited by: 20
Author(s): Ofelia Jiménez-Barrón, Ricardo García-Sandoval, Susana Magallón, Abisaí García-Mendoza, J. Nieto-Sotelo, Erika Aguirre‐Planter, Luis E. Eguiarte
Software Mentions: 1
Published: over 3 years ago

10.1038/s42003-018-0018-6

Freshwater transitions and symbioses shaped the evolution and extant diversity of caridean shrimps
Cited by: 18
Author(s): Katie E. Davis, Sammy De Grave, Cyrille Delmer, Matthew A. Wills
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0184529

Rapid and recent diversification patterns in Anseriformes birds: Inferred from molecular phylogeny and diversification analyses
Cited by: 40
Author(s): Zhonglou Sun, Tao Pan, Chaochao Hu, Lu Sun, Hengwu Ding, Hui Wang, Chenling Zhang, Jiman Hong, Qing Chang, Xianzhao Kan, Baowei Zhang
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0178240

Shift from slow- to fast-water habitats accelerates lineage and phenotype evolution in a clade of Neotropical suckermouth catfishes (Loricariidae: Hypoptopomatinae)
Cited by: 19
Author(s): Fábio Fernandes Roxo, Nathan K. Lujan, Victor Alberto Tagliacollo, Brandon T. Waltz, Gabriel S. C. Silva, Cláudio Oliveira, James S. Albert
Software Mentions: 1
Published: almost 7 years ago

10.1093/iob/obab003

Extreme Morphology, Functional Trade-offs, and Evolutionary Dynamics in a Clade of Open-Ocean Fishes (Perciformes: Bramidae)
Cited by: 5
Author(s): Michelle C Gilbert, Andrew J. Conith, Catherine S Lerose, Joshua K. Moyer, Steve Huskey, R. Craig Albertson
Software Mentions: 1
Published: over 3 years ago

10.1098/rspb.2015.2289

Size is not everything: rates of genome size evolution, not C -value, correlate with speciation in angiosperms
Cited by: 63
Author(s): Mark N. Puttick, James W. Clark, Philip C. J. Donoghue
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0183070

Muroid rodent phylogenetics: 900-species tree reveals increasing diversification rates
Cited by: 211
Author(s): Scott J. Steppan, John J. Schenk
Software Mentions: 1
Published: almost 7 years ago

10.7717/peerj.3815

Are diversification rates and chromosome evolution in the temperate grasses (Pooideae) associated with major environmental changes in the Oligocene-Miocene?
Cited by: 25
Author(s): Manuel Pimentel, Marcial Escudero, Elvira Sahuquillo, Miguel Minaya, Pilar Catalán
Software Mentions: 1
Published: over 6 years ago

10.1098/rsos.150277

Diversification rates and phenotypic evolution in venomous snakes (Elapidae)
Cited by: 89
Author(s): Michael S. Y. Lee, Kate L. Sanders, Benedict King, Alessandro Palci
Software Mentions: 1
Published: over 8 years ago

Projects: cran: BAMMtools

Papers Mentioning BAMMtools 55