Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: gdistance
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/gdistance
Distances and Routes on Geographical Grids
16 versions
Latest release: over 1 year ago
24 dependent packages
3,770 downloads last month
Papers Mentioning gdistance 46
10.1371/journal.pone.0195970
The importance of regional models in assessing canine cancer incidences in SwitzerlandCited by: 4
Author(s): Gianluca Boo, Stefan Leyk, Chris Brunsdon, Ricarda Graf, Andreas Pospischil, Sara Irina Fabrikant
Software Mentions: 18
Published: over 6 years ago
10.7717/peerj.11177
Predicting migration routes for three species of migratory bats using species distribution modelsCited by: 13
Author(s): Jamin G. Wieringa, Bryan C. Carstens, H. Lisle Gibbs
Software Mentions: 16
Published: over 3 years ago
10.3389/fvets.2019.00045
Exploring Uncertainty in Canine Cancer Data Sources Through Dasymetric RefinementCited by: 5
Author(s): Gianluca Boo, Stefan Leyk, Sara Irina Fabrikant, Ricarda Graf, Andreas Pospischil
Software Mentions: 13
Published: almost 6 years ago
10.7717/peerj.5518
Random forest as a generic framework for predictive modeling of spatial and spatio-temporal variablesCited by: 419
Author(s): Tomislav Hengl, Madlene Nussbaum, Marvin N. Wright, G.B.M. Heuvelink, Benedikt Gräler
Software Mentions: 13
Published: over 6 years ago
10.1111/eva.13274
SNP analyses and acoustic tagging reveal multiple origins and widespread dispersal of invasive brown trout in the Falkland IslandsCited by: 2
Author(s): Jessica F. Minett, Carlos García de Leániz, Halina Sobolewska, Paul Brickle, Glenn T. Crossin, Sofía Consuegra
Software Mentions: 11
Published: over 3 years ago
10.1002/ece3.2100
Phylogenetic assemblage structure of North American trees is more strongly shaped by glacial-interglacial climate variability in gymnosperms than in angiospermsCited by: 39
Author(s): Ziyu Ma, Brody Sandel, Jens‐Christian Svenning
Software Mentions: 10
Published: over 8 years ago
10.1371/journal.pone.0179570
Multi-level, multi-scale resource selection functions and resistance surfaces for conservation planning: Pumas as a case studyCited by: 77
Author(s): Katherine A. Zeller, T. Winston Vickers, Holly B. Ernest, Walter M. Boyce
Software Mentions: 9
Published: over 7 years ago
10.1371/journal.pone.0164816
A Multi-Faceted Approach to Analyse the Effects of Environmental Variables on Geographic Range and Genetic Structure of a Perennial Psammophilous Geophyte: The Case of the Sea Daffodil Pancratium maritimum L. in the Mediterranean BasinCited by: 12
Author(s): Olga De Castro, Antonietta Di Maio, Mirko Di Febbraro, Gennaro Imparato, Michele Innangi, Errol Véla, Bruno Menale
Software Mentions: 8
Published: about 8 years ago
10.1371/journal.pone.0062127
Home Range Utilisation and Long-Range Movement of Estuarine Crocodiles during the Breeding and Nesting SeasonCited by: 59
Author(s): Hamish A. Campbell, Ross G. Dwyer, Terri R. Irwin, Craig E. Franklin
Software Mentions: 8
Published: over 11 years ago
10.1002/ece3.4296
Landscape genetics identifies streams and drainage infrastructure as dispersal corridors for an endangered wetland birdCited by: 12
Author(s): Charles B. van Rees, J. Michael Reed, R. E. Wilson, Jared G. Underwood, Sarah A. Sonsthagen
Software Mentions: 7
Published: over 6 years ago
10.1002/ece3.4994
Sampling related individuals within ponds biases estimates of population structure in a pond‐breeding amphibianCited by: 23
Author(s): Kyle A. O’Connell, Kevin P. Mulder, Jose A. Maldonado, Kathleen L. Currie, Dennis M. Ferraro
Software Mentions: 7
Published: almost 6 years ago
10.3389/fgene.2020.00307
Alternative Quantifications of Landscape Complementation to Model Gene Flow in Banded Longhorn Beetles [Typocerus v. velutinus (Olivier)]Cited by: 2
Author(s): Richard Borthwick, Alida de Flamingh, Maximillian H.K. Hesselbarth, Anjana Parandhaman, Helene H. Wagner, Hossam Eldien M. Abdel Moniem
Software Mentions: 6
Published: over 4 years ago
10.1002/ece3.5489
Effects of contemporary agricultural land cover on Colorado potato beetle genetic differentiation in the Columbia Basin and Central SandsCited by: 16
Author(s): Michael S. Crossley, Silvia I. Rondon, Sean D. Schoville
Software Mentions: 6
Published: over 5 years ago
10.7717/peerj.10622
Stage 1 registered report: spatiotemporal patterns of the COVID-19 epidemic in Mexico at the municipality levelCited by: 1
Author(s): Jean-François Mas
Software Mentions: 6
Published: almost 4 years ago
10.1098/rsos.160350
Two species of Southeast Asian cats in the genus <i>Catopuma</i> with diverging histories: an island endemic forest specialist and a widespread habitat generalistCited by: 13
Author(s): Riddhi P. Patel, Daniel W. Förster, Andrew C. Kitchener, Mark D. Rayan, Shariff W. Mohamed, Laura Werner, Dorina Lenz, Hans Pfestorf, Stephanie Kramer‐Schadt, Viktoriia Radchuk, Jörns Fickel, Andreas Wilting
Software Mentions: 6
Published: about 8 years ago
10.1371/journal.pone.0148016
Diversity and Biogeography of Bathyal and Abyssal Seafloor BacteriaCited by: 99
Author(s): Christina Bienhold, Lucie Zinger, Antje Boetius, Alban Ramette
Software Mentions: 6
Published: almost 9 years ago
10.1371/journal.pone.0125009
Incidence and Risk Factors of Childhood Pneumonia-Like Episodes in Biliran Island, Philippines—A Community-Based StudyCited by: 28
Author(s): Hisato Kosai, Raita Tamaki, Mayuko Saito, Kentaro Tohma, Portia Alday, Alvin G. Tan, Marianette T. Inobaya, Akira Suzuki, Taro Kamigaki, Soccoro Lupisan, Veronica Tallo, Hitoshi Oshitani
Software Mentions: 5
Published: over 9 years ago
10.1371/journal.pone.0174212
The relationship between least-cost and resistance distanceCited by: 38
Author(s): Robby R. Marrotte, Jeff Bowman
Software Mentions: 5
Published: over 7 years ago
10.1126/sciadv.abe2592
Aquaculture mediates global transmission of a viral pathogen to wild salmonCited by: 24
Author(s): Gideon Mordecai, Kristina M. Miller, Arthur L. Bass, Andrew Bateman, Amy K. Teffer, Jessica M. Caleta, Emiliano Di Cicco, Angela D. Schulze, Karia H. Kaukinen, Shaorong Li, Amy Tabata, Bradley R. Jones, Tobi J. Ming, Jeffrey B. Joy
Software Mentions: 5
Published: over 3 years ago
10.1371/journal.pone.0073051
marmap: A Package for Importing, Plotting and Analyzing Bathymetric and Topographic Data in RCited by: 387
Author(s): Eric Pante, Benoît Simon-Bouhet
Software Mentions: 5
Published: over 11 years ago
10.1002/ece3.2800
Responses of coral reef fishes to past climate changes are related to life‐history traitsCited by: 15
Author(s): Eduardo Ottimofiore, Camille Albouy, Fabien Leprieur, Patrice Descombes, Michel Kulbicki, David Mouillot, Valeriano Parravicini, Loïc Pellissier
Software Mentions: 5
Published: almost 8 years ago
10.1002/ece3.4952
Population genomics of rapidly invading lionfish in the Caribbean reveals signals of range expansion in the absence of spatial population structureCited by: 20
Author(s): Eleanor K. Bors, Santiago Herrera, James A. Morris, Timothy M. Shank
Software Mentions: 5
Published: almost 6 years ago
10.1038/s41598-021-90744-z
Directional changes in Levallois core technologies between Eastern Africa, Arabia, and the Levant during MIS 5Cited by: 3
Author(s): James Blinkhorn, Huw S. Groucutt, Eleanor M. L. Scerri, Michael D. Petraglia, Simon Blockley
Software Mentions: 5
Published: over 3 years ago
10.1002/ece3.660
Investigating sex-specific dynamics using uniparental markers: West New Guinea as a case studyCited by: 4
Author(s): Stefano Mona, Ernest Mordret, Michel Veuille, Mila Tommaseo-Ponzetta
Software Mentions: 4
Published: over 11 years ago
10.1371/journal.pntd.0008096
Quantifying geographic accessibility to improve efficiency of entomological monitoringCited by: 6
Author(s): Joshua Longbottom, Ana Krause, Stephen J. Torr, Michelle C. Stanton
Software Mentions: 4
Published: over 4 years ago
10.1371/journal.pone.0219981
Pathogen invasion history elucidates contemporary host pathogen dynamicsCited by: 14
Author(s): Vance T. Vredenburg, Samuel V. G. McNally, Hasan Sulaeman, Helen Butler, Tiffany A. Yap, Michelle S. Koo, Dirk S. Schmeller, Celeste Dodge, Tina L. Cheng, Gordon Lau, Cheryl J. Briggs
Software Mentions: 4
Published: over 5 years ago
10.1371/journal.pone.0239149
Fertilizer profitability for smallholder maize farmers in Tanzania: A spatially-explicit ex ante analysisCited by: 5
Author(s): Sebastian Palmas, Jordan Chamberlin
Software Mentions: 4
Published: over 4 years ago
10.3389/fmicb.2018.03356
Unicellular Cyanobacteria Are Important Components of Phytoplankton Communities in Australia’s Northern Oceanic EcoregionsCited by: 6
Author(s): Lisa R. Moore, Tianqing Huang, Martin Ostrowski, Sophie Mazard, Sheemal S. Kumar, Hasinika K. A. H. Gamage, Mark V. Brown, Lauren F. Messer, Justin R. Seymour, Ian T. Paulsen
Software Mentions: 4
Published: almost 6 years ago
10.3389/fvets.2019.00481
Infectious Salmon Anemia and Farm-Level Culling StrategiesCited by: 8
Author(s): Lars Qviller, Anja Bråthen Kristoffersen, Trude Marie Lyngstad, Atle Lillehaug
Software Mentions: 4
Published: almost 5 years ago
10.1098/rsos.171178
Defining the risk landscape in the context of pathogen pollution: <i>Toxoplasma gondii</i> in sea otters along the Pacific RimCited by: 19
Author(s): Tristan L. Burgess, M. Tim Tinker, Melissa A. Miller, James L. Bodkin, Michael J. Murray, Justin A. Saarinen, Linda M. Nichol, Shawn Larson, Patricia A. Conrad, Christine K. Johnson
Software Mentions: 4
Published: over 6 years ago
10.1038/s41598-018-29982-7
The influence of latitude, geographic distance, and habitat discontinuities on genetic variation in a high latitude montane speciesCited by: 13
Author(s): John A. Hindley, Brendan A. Graham, Paulo C. Pulgarín‐R, Theresa M. Burg
Software Mentions: 4
Published: over 6 years ago
10.1371/journal.pone.0068646
High and Distinct Range-Edge Genetic Diversity despite Local BottlenecksCited by: 79
Author(s): Jorge Assis, Nelson Castilho Coelho, Filipe Alberto, Myriam Valéro, Pete Raimondi, Dan C. Reed, Ester Á. Serrão
Software Mentions: 3
Published: over 11 years ago
10.1038/s41597-019-0265-5
A suite of global accessibility indicatorsCited by: 50
Author(s): Andy Nelson, Daniel J. Weiss, Jacob van Etten, Andrea Cattaneo, Theresa McMenomy, Jawoo Koo
Software Mentions: 3
Published: about 5 years ago
10.3390/jof7030182
Landscape Genetic Connectivity and Evidence for Recombination in the North American Population of the White-Nose Syndrome Pathogen, Pseudogymnoascus destructansCited by: 1
Author(s): Adrian Forsythe, Karen J. Vanderwolf, Jianping Xu
Software Mentions: 3
Published: almost 4 years ago
10.1186/1475-2875-13-421
Fine-scale malaria risk mapping from routine aggregated case dataCited by: 60
Author(s): Hugh J. W. Sturrock, Justin M. Cohen, Petr Keil, Andrew J. Tatem, Arnaud Le Menach, Nyasatu Ntshalintshali, Michelle S. Hsiang, Roland Gosling
Software Mentions: 3
Published: about 10 years ago
10.1111/eva.12627
Quantifying functional connectivity: The role of breeding habitat, abundance, and landscape features on range‐wide gene flow in sage‐grouseCited by: 24
Author(s): Jeffrey R. Row, Kevin E. Doherty, Todd B. Cross, Michael K. Schwartz, Sara J. Oyler‐McCance, Dave E. Naugle, Steven T. Knick, Bradley C. Fedy
Software Mentions: 3
Published: over 6 years ago
10.1371/journal.pone.0178239
Considering reefscape configuration and composition in biophysical models advance seascape geneticsCited by: 16
Author(s): Simon Van Wynsberge, Serge Andréfouët, Nabila Gaertner‐Mazouni, Josina Tiavouane, Daphné Grulois, Jérôme Lefèvre, Malin L. Pinsky, Cécile Fauvelot
Software Mentions: 3
Published: over 7 years ago
10.1371/journal.pone.0176960
Simulating the spread of selection-driven genotypes using landscape resistance models for desert bighorn sheepCited by: 20
Author(s): Tyler G. Creech, Clinton W. Epps, Erin L. Landguth, John D. Wehausen, Rachel S. Crowhurst, Brandon Holton, Ryan J. Monello
Software Mentions: 3
Published: over 7 years ago
10.7717/peerj.4135
Multi-scale and multi-site resampling of a study area in spatial genetics: implications for flying insect speciesCited by: 5
Author(s): Julien Haran, Jean‐Pierre Rossi, J. A. Pajares, Luís Bonifácio, Pedro Naves, Alain Roques, Géraldine Roux
Software Mentions: 3
Published: about 7 years ago
10.1007/s00439-016-1742-y
Complete mitochondrial genomes of Thai and Lao populations indicate an ancient origin of Austroasiatic groups and demic diffusion in the spread of Tai–Kadai languagesCited by: 55
Author(s): Wibhu Kutanan, Jatupol Kampuansai, Metawee Srikummool, Daoroong Kangwanpong, Silvia Ghirotto, Andrea Brunelli, Mark Stoneking
Software Mentions: 3
Published: about 8 years ago
10.7717/peerj.3842
Does silvoagropecuary landscape fragmentation affect the genetic diversity of the sigmodontine rodent<i>Oligoryzomys longicaudatus</i>?Cited by: 3
Author(s): Daniela Lazo-Cancino, Selim Musleh, Cristián E. Hernández, Eduardo L. Palma, Enrique Rodríguez‐Serrano
Software Mentions: 3
Published: about 7 years ago
10.1186/s13071-018-3189-6
Parasitic sea louse infestations on wild sea trout: separating the roles of fish farms and temperatureCited by: 18
Author(s): Knut Wiik Vollset, Lars Qviller, Bjørnar Skår, Bjørn Torgeir Barlaup, Ian R. Dohoo
Software Mentions: 2
Published: about 6 years ago
10.3389/fpls.2019.00303
Influence of the Quaternary Glacial Cycles and the Mountains on the Reticulations in the Subsection Willkommia of the Genus CentaureaCited by: 5
Author(s): Samira Ben-Menni Schuler, Jordi López‐Pujol, Gabriel Blanca, Roser Vilatersana, Núria Garcia‐Jacas, Víctor N. Suárez‐Santiago
Software Mentions: 2
Published: almost 6 years ago
10.1371/journal.pone.0012060
A Geospatial Modelling Approach Integrating Archaeobotany and Genetics to Trace the Origin and Dispersal of Domesticated PlantsCited by: 52
Author(s): Jacob van Etten, Robert J. Hijmans
Software Mentions: 2
Published: over 14 years ago
10.1186/s41182-021-00338-8
Presence of dogs and proximity to a wildlife reserve increase household level risk of tungiasis in Kwale, KenyaCited by: 3
Author(s): Peter S. Larson, Masanobu Ono, Mwatasa Changoma, Kensuke Goto, Satoshi Kaneko, Kazuhiko Moji, Noboru Minakawa
Software Mentions: 2
Published: over 3 years ago
10.1073/pnas.1903829116
Shearwaters know the direction and distance home but fail to encode intervening obstacles after free-ranging foraging tripsCited by: 17
Author(s): Oliver Padget, Geoffrey J. Stanley, Jay Willis, Annette L. Fayet, Sarah Bond, Louise Maurice, Akiko Shoji, Ben Dean, Holly Kirk, Ignacio Juarez-Martinez, Robin Freeman, Mark Bolton, Tim Guilford
Software Mentions: 2
Published: about 5 years ago