cran: RankAggreg | Projects | Ecosyste.ms: Papers

10.3390/cells9030786

Systematic Identification of Housekeeping Genes Possibly Used as References in Caenorhabditis elegans by Large-Scale Data Integration
Cited by: 13
Author(s): Jingxin Tao, Youjin Hao, Xudong Li, Huachun Yin, Xiner Nie, Jie Zhang, Bo-Ying Xu, Chen Qiao, Bo Li
Software Mentions: 8
Published: over 4 years ago

10.3389/fcell.2021.686664

Systematic Characterization of Novel Immune Gene Signatures Predicts Prognostic Factors in Hepatocellular Carcinoma
Cited by: 4
Author(s): Dafeng Xu, Yu Wang, Junzhen Wu, Yuliang Zhang, Zhehao Liu, Yonghai Chen, Jinfang Zheng
Software Mentions: 8
Published: about 3 years ago

10.3390/s19071588

Reducing False Arrhythmia Alarms Using Different Methods of Probability and Class Assignment in Random Forest Learning Methods
Cited by: 9
Author(s): Krzysztof Gajowniczek, Iga Grzegorczyk, Tomasz Ząbkowski
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0143111

CentiServer: A Comprehensive Resource, Web-Based Application and R Package for Centrality Analysis
Cited by: 85
Author(s): Mahdi Jalili, Ali Salehzadeh‐Yazdi, Yazdan Asgari, Seyed Shahriar Arab, Marjan Yaghmaie, Ardeshir Ghavamzadeh, Kamran Alimoghaddam
Software Mentions: 6
Published: about 9 years ago

10.1038/s41598-021-98290-4

Improving the visual communication of environmental model projections
Cited by: 4
Author(s): Hayley J. Bannister, Paul G. Blackwell, Kieran Hyder, Thomas J. Webb
Software Mentions: 5
Published: about 3 years ago

10.3390/ijms20174210

Selection of Appropriate Reference Genes for Gene Expression Analysis under Abiotic Stresses in Salix viminalis
Cited by: 11
Author(s): Valentin Ambroise, Sylvain Legay, Gea Guerriero, Jean-François Hausman, Ann Cuypers, Kjell Sergeant
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2021.668448

Integrated Analysis of lncRNAs, mRNAs, and TFs to Identify Regulatory Networks Underlying MAP Infection in Cattle
Cited by: 6
Author(s): Maryam Heidari, A. Pakdel, Mohammad Reza Bakhtiarizadeh, Fariba Dehghanian
Software Mentions: 4
Published: over 3 years ago

10.1186/s40246-021-00344-1

High-throughput screening of circRNAs reveals novel mechanisms of tuberous sclerosis complex-related renal angiomyolipoma
Cited by: 2
Author(s): Yupei Zhao, Hao Guo, Wenda Wang, Guoyang Zheng, Zhan Wang, Xu Wang, Yushi Zhang
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0232542

Transcriptome analysis identifies genes involved with the development of umbilical hernias in pigs
Cited by: 10
Author(s): Mayla Regina Souza, A. M. G. Ibelli, Igor Ricardo Savoldi, Mauricio Egídio Cantão, J. de O. Peixoto, M. A. Z. Morés, Jader Silva Lopes, Luiz Lehmann Coutinho, Mônica Corrêa Ledur
Software Mentions: 3
Published: over 4 years ago

10.1186/s13062-018-0223-8

Predicting clinical outcomes in neuroblastoma with genomic data integration
Cited by: 9
Author(s): Ilyes Baali, Durmus Alp Emre Acar, Tunde Aderinwale, Saber Hafezqorani, Hilal Kazan
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0031333

Cancer Gene Prioritization for Targeted Resequencing Using FitSNP Scores
Cited by: 3
Author(s): Annelies Fieuw, Bram De Wilde, Franki Speleman, Jo Vandesompele, Katleen De Preter
Software Mentions: 3
Published: almost 13 years ago

10.1038/s41598-021-97319-y

An integrated analysis of mRNAs, lncRNAs, and miRNAs based on weighted gene co-expression network analysis involved in bovine endometritis
Cited by: 11
Author(s): Negin Sheybani, Mohammad Reza Bakhtiarizadeh, Abdolreza Salehi
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0228314

Influence of heat stress on reference genes stability in heart and liver of two chickens genotypes
Cited by: 5
Author(s): Juliana Gracielle Gonzaga Gromboni, Hellenn Cardoso Oliveira, Daniele Botelho Diniz Marques, Adriana García, Ronaldo Vasconcelos Farias Filho, Caio Fernando Gromboni, Teillor Machado Souza, Amauri Arias Wenceslau
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0131627

Ensemble Methods for MiRNA Target Prediction from Expression Data
Cited by: 29
Author(s): Thuc Duy Le, Junpeng Zhang, Lin Liu, Jiuyong Li
Software Mentions: 3
Published: over 9 years ago

10.1177/1176935120965542

Robust Distance Measures for <i>k</i>NN Classification of Cancer Data
Cited by: 27
Author(s): Rezvan Ehsani, Finn Drabløs
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0036323

Reference Genes for Real-Time PCR Quantification of MicroRNAs and Messenger RNAs in Rat Models of Hepatotoxicity
Cited by: 90
Author(s): María Noelia Lardizábal, Ana Lía Nocito, Stella Maris Daniele, Leonardo Ornella, Javier F. Palatnik, Luis M. Veggi
Software Mentions: 3
Published: over 12 years ago

10.1371/journal.pone.0070603

Identification and Validation of Reference Genes for Transcript Normalization in Strawberry (Fragaria × ananassa) Defense Responses
Cited by: 72
Author(s): Francisco Amil-Ruíz, José Garrido-Gala, Rosario Blanco‐Portales, Kevin M. Folta, Juan Muñoz‐Blanco, José L. Caballero
Software Mentions: 3
Published: over 11 years ago

10.1186/s13007-019-0420-1

Selection and validation of reference genes for quantitative expression analysis of miRNAs and mRNAs in Poplar
Cited by: 34
Author(s): Fang Tang, Liwei Chu, Wenbo Shu, Xuejiao He, Lijuan Wang, Mengzhu Lu
Software Mentions: 3
Published: over 5 years ago

10.1186/1471-2229-10-4

Validation of reference genes for quantitative real-time PCR during leaf and flower development in Petunia hybrida
Cited by: 259
Author(s): Izaskun Mallona, Sandra Lischewski, Julia Weiß, Bettina Hause, Marcos Egea‐Cortines
Software Mentions: 3
Published: almost 15 years ago

10.18632/oncotarget.16079

Detection of COPB2 as a KRAS synthetic lethal partner through integration of functional genomics screens
Cited by: 5
Author(s): Eleni G. Christodoulou, Hai Yang, Franziska Lademann, Christian Pilarsky, Andreas Beyer, Michael Schroeder
Software Mentions: 2
Published: almost 8 years ago

10.1186/1471-2164-13-S7-S26

Comparison and evaluation of pathway-level aggregation methods of gene expression data
Cited by: 18
Author(s): Seungwoo Hwang
Software Mentions: 2
Published: about 12 years ago

10.1186/1756-0500-4-518

Identification of superior reference genes for data normalisation of expression studies via quantitative PCR in hybrid roses (Rosa hybrida)
Cited by: 86
Author(s): Maik Klie, Thomas Debener
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0157467

Identification of Reference Genes for Quantitative Gene Expression Studies in a Non-Model Tree Pistachio (Pistacia vera L.)
Cited by: 13
Author(s): Maryam Moazzam Jazi, Effat Ghadirzadeh Khorzoghi, Christopher Botanga, Seyed Mahdi Seyedi
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0233249

Identification and selection of optimal reference genes for qPCR-based gene expression analysis in Fucus distichus under various abiotic stresses
Cited by: 9
Author(s): Marina Linardić, Siobhan A. Braybrook
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0176402

Influence of heat stress, sex and genetic groups on reference genes stability in muscle tissue of chicken
Cited by: 25
Author(s): Hellenn Cardoso Oliveira, Adriana García, Juliana Gracielle Gonzaga Gromboni, Ronaldo Vasconcelos Farias Filho, Carlos Souza do Nascimento, Amauri Arias Wenceslau
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0176368

Selection of suitable endogenous reference genes for qPCR in kidney and hypothalamus of rats under testosterone influence
Cited by: 28
Author(s): Khadijeh Gholami, Su Yi Loh, Naguib Salleh, Sau Kuen Lam, See-Ziau Hoe
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0083041

Reference Genes Selection for Quantitative Real-Time PCR Using RankAggreg Method in Different Tissues of Capra hircus
Cited by: 33
Author(s): Mohammad Javad Najafpanah, Mostafa Sadeghi, Mohammad Reza Bakhtiarizadeh
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0233109

Selection and validation of reference genes for normalisation of gene expression in ischaemic and toxicological studies in kidney disease
Cited by: 8
Author(s): Sanjeeva Herath, Hongying Dai, Jonathan Erlich, Amy Y M Au, Kylie M. Taylor, Lena Succar, Z. H. Endre
Software Mentions: 2
Published: over 4 years ago

10.1186/s13059-014-0433-z

Development of synchronous VHL syndrome tumors reveals contingencies and constraints to tumor evolution
Cited by: 64
Author(s): Rosalie Fisher, Stuart Horswell, Andrew Rowan, Maximilian P Salm, Elza C. de Bruin, Sakshi Gulati, Nicholas McGranahan, Mark Stares, Marco Gerlinger, Ignacio Varela, Andrew Crockford, Francesco Favero, Virginie Quidville, Fabrice André, Carolina Navas, Eva Grönroos, David Nicol, Steve Hazell, David Hrouda, Tim O’Brien, Nik Matthews, Ben Phillimore, Sharmin Begum, Adam Rabinowitz, Jennifer Biggs, Paul A. Bates, Neil Q. McDonald, Gordon Stamp, Bradley Spencer‐Dene, James J. Hsieh, Jianing Xu, Lisa Pickering, Martin Gore, James Larkin, Charles Swanton
Software Mentions: 2
Published: over 10 years ago

10.1007/s00109-020-01898-8

S100A4 mRNA-protein relationship uncovered by measurement noise reduction
Cited by: 0
Author(s): Angelos Theodoros Athanasiou, Thomas Nußbaumer, Stefan Kummer, Martin Hofer, Iain G. Johnston, Moritz Staltner, Daniela Maria Allmer, Milcah C. Scott, Claus Vogl, Joelle M. Fenger, Jaime F. Modiano, Ingrid Walter, Ralf Steinborn
Software Mentions: 2
Published: over 4 years ago

10.1186/1471-2105-10-62

RankAggreg, an R package for weighted rank aggregation
Cited by: 264
Author(s): Vasyl Pihur, Susmita Datta, Somnath Datta
Software Mentions: 2
Published: almost 16 years ago

10.1371/journal.pone.0111399

Reference Gene Validation for Quantitative RT-PCR during Biotic and Abiotic Stresses in Vitis vinifera
Cited by: 37
Author(s): Augusta Borges, Catarina G Fonseca, Ricardo B. Ferreira, Ana Lourenço, Sara Monteiro
Software Mentions: 1
Published: about 10 years ago

10.3389/fpls.2016.01505

Selection of Reliable Reference Genes for Gene Expression Analysis under Abiotic Stresses in the Desert Biomass Willow, Salix psammophila
Cited by: 31
Author(s): Jianbo Li, Huixia Jia, Xiaojiao Han, Jin Zhang, Peng Sun, Mengzhu Lu, Jianjun Hu
Software Mentions: 1
Published: about 8 years ago

10.1186/s12864-021-07393-9

Genome-wide identification of ubiquitin proteasome subunits as superior reference genes for transcript normalization during receptacle development in strawberry cultivars
Cited by: 5
Author(s): Jianqing Chen, Jian Zhou, Yanhong Hong, Zekun Li, Xiuyan Cheng, Aiying Zheng, Yilin Zhang, Jun Song, Guifeng Xie, Changmei Chen, Meng Yuan, Tengyun Wang, Qing‐Xi Chen
Software Mentions: 1
Published: almost 4 years ago

10.1038/srep17051

Evaluation of Reference Genes for RT-qPCR Studies in the Seagrass Zostera muelleri Exposed to Light Limitation
Cited by: 23
Author(s): Martin Schliep, Mathieu Pernice, Sutinee Sinutok, Catherine Bryant, Paul H. York, Michael A. Rasheed, Peter J. Ralph
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-018-22743-6

Selection of reference genes for miRNA qRT-PCR under abiotic stress in grapevine
Cited by: 59
Author(s): Meng Luo, Zhen Gao, Hui Li, Li Qin, Caixi Zhang, Wenping Xu, Shiren Song, Chao Ma, Shiping Wang
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-34236-7

Selection and validation of suitable reference genes for qPCR gene expression analysis in goats and sheep under Peste des petits ruminants virus (PPRV), lineage IV infection
Cited by: 14
Author(s): Anamika Sahu, Sajad A. Wani, Shikha Saxena, Kaushal Kishor Rajak, Dheeraj Chaudhary, Aditya Prasad Sahoo, Alok Khanduri, Awadh Bihari Pandey, Piyali Mondal, Waseem Akram Malla, Raja Ishaq Nabi Khan, Ashok Kumar Tiwari, Bina Mishra, D. Muthuchelvan, Bishnu Prasad Mishra, Raj Kumar Singh, Ravi Kumar Gandham
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-63917-5

Selection and Validation of Reference Genes for Normalisation of Gene Expression in Glehnia littoralis
Cited by: 20
Author(s): Li Li, Naiwei Li, Hailing Fang, Xiwu Qi, Yunshan Zhou
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0071776

Effective Alu Repeat Based RT-Qpcr Normalization in Cancer Cell Perturbation Experiments
Cited by: 12
Author(s): Ali Rihani, Tom Van Maerken, Filip Pattyn, Gert Van Peer, Anneleen Beckers, Sara De Brouwer, Candy Kumps, Evelien Mets, Joni Van der Meulen, Pieter Rondou, Carina Leonelli, Pieter Mestdagh, Franki Speleman, Jo Vandesompele
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0238189

Reference genes for proximal femoral epiphysiolysis expression studies in broilers cartilage
Cited by: 7
Author(s): Ludmila Mudri Hul, A. M. G. Ibelli, J. de O. Peixoto, Mayla Regina Souza, Igor Ricardo Savoldi, Débora Ester Petry Marcelino, Mateus Tremea, Mônica Corrêa Ledur
Software Mentions: 1
Published: over 4 years ago

10.1186/s13062-016-0168-8

Exploring the importance of cancer pathways by meta-analysis of differential protein expression networks in three different cancers
Cited by: 2
Author(s): Sinjini Sikdar, Somnath Datta, Susmita Datta
Software Mentions: 1
Published: about 8 years ago

10.1186/s12870-020-02670-3

Selection and validation of reference genes for measuring gene expression in Toona ciliata under different experimental conditions by quantitative real-time PCR analysis
Cited by: 17
Author(s): Huiyun Song, Wenmai Mao, Zhihao Duan, Qingmin Que, Wei Zhou, Xiaoyang Chen, Pei Li
Software Mentions: 1
Published: about 4 years ago

10.3390/ijms22052569

Selection and Validation of Reference Genes for qRT-PCR Analysis in the Oil-Rich Tuber Crop Tiger Nut (Cyperus esculentus) Based on Transcriptome Data
Cited by: 8
Author(s): Xue Bai, Tao Chen, Yan Wu, Mingyong Tang, Zeng-Fu Xu
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijms13078752

Comparison of Different Ranking Methods in Protein-Ligand Binding Site Prediction
Cited by: 4
Author(s): Jun Gao, Qi Liu, Hong-Yo Kang, Zhiwei Cao, Ruixin Zhu
Software Mentions: 1
Published: over 12 years ago

10.3390/ijms151221825

Real-Time qPCR Identifies Suitable Reference Genes for Borna Disease Virus-Infected Rat Cortical Neurons
Cited by: 19
Author(s): Lujun Zhang, Siwen Liu, Liang Zhang, Hongmin You, Rongzhong Huang, Lin Sun, Peng He, Shigang Chen, Hong Zhou, Peng Xie
Software Mentions: 1
Published: about 10 years ago

10.3390/ijms160920468

Evaluation of Appropriate Reference Genes for Reverse Transcription-Quantitative PCR Studies in Different Tissues of a Desert Poplar via Comparision of Different Algorithms
Cited by: 25
Author(s): Hou‐Ling Wang, Lan Li, Sha Tang, Chao Yuan, Qianqian Tian, Yanyan Su, Huiguang Li, Lin Zhao, Weilun Yin, Rui Zhao, Xinli Xia
Software Mentions: 1
Published: over 9 years ago

10.3390/ijms17081198

Screening and Validation of Housekeeping Genes of the Root and Cotyledon of Cunninghamia lanceolata under Abiotic Stresses by Using Quantitative Real-Time PCR
Cited by: 28
Author(s): Wenjing Bao, Yanli Qu, Xin Shan, Yinglang Wan
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms20010034

Comparison of Reliable Reference Genes Following Different Hormone Treatments by Various Algorithms for qRT-PCR Analysis of Metasequoia
Cited by: 13
Author(s): Jingjing Wang, Shuo Han, Weilun Yin, Xinli Xia, Chao Liu
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0192343

Reference gene selection for molecular studies of dormancy in wild oat (Avena fatua L.) caryopses by RT-qPCR method
Cited by: 16
Author(s): Izabela Ruduś, Jan Kępczyński
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0210567

The validation of Short Interspersed Nuclear Elements (SINEs) as a RT-qPCR normalization strategy in a rodent model for temporal lobe epilepsy
Cited by: 6
Author(s): René A. J. Crans, Jonathan Janssens, Sofie Daelemans, Elise Wouters, Robrecht Raedt, Debby Van Dam, Peter Paul De Deyn, Kathleen Van Craenenbroeck
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0210087

Identification of suitable reference genes for real-time qPCR in homocysteine-treated human umbilical vein endothelial cells
Cited by: 4
Author(s): Zhu Xia, Lujun Zhang, Yang-Xi Hu, Jianliang Zhang
Software Mentions: 1
Published: almost 6 years ago

Projects: cran: RankAggreg

Papers Mentioning RankAggreg 51