cran: varSelRF | Projects | Ecosyste.ms: Papers

10.1002/ece3.5599

Linking pollen foraging of megachilid bees to their nest bacterial microbiota
Cited by: 29
Author(s): Anna Voulgari‐Kokota, Markus J. Ankenbrand, Gudrun Grimmer, Ingolf Steffan‐Dewenter, Alexander Keller
Software Mentions: 10
Published: about 5 years ago

10.1002/1878-0261.12850

High‐throughput proteomics of breast cancer interstitial fluid: identification of tumor subtype‐specific serologically relevant biomarkers
Cited by: 13
Author(s): Thilde Terkelsen, Maria Pernemalm, Pavel Gromov, Anna‐Lise Børresen‐Dale, Anders Krogh, Vilde Drageset Haakensen, Janne Lethiö, Elena Papaleo, Irina Gromova
Software Mentions: 10
Published: almost 4 years ago

10.1186/s13104-016-1945-2

Feature selection and validated predictive performance in the domain of Legionella pneumophila: a comparative study
Cited by: 9
Author(s): Tjeerd van der Ploeg, Ewout W. Steyerberg
Software Mentions: 9
Published: over 8 years ago

10.1038/srep46658

Metabolism dysregulation induces a specific lipid signature of nonalcoholic steatohepatitis in patients
Cited by: 148
Author(s): Franck Chiappini, Audrey Coilly, Hanane Kadar, Philippe Gual, Albert Tran, Christophe Desterke, Didier Samuel, Jean‐Charles Duclos‐Vallée, David Touboul, Justine Bertrand‐Michel, Alain Brunelle, Catherine Guettier, François Le Naour
Software Mentions: 8
Published: over 7 years ago

10.3390/genes10100778

DNA Methylation Markers for Pan-Cancer Prediction by Deep Learning
Cited by: 48
Author(s): Biao Liu, Yulu Liu, Xingxin Pan, Mengyao Li, Shuang Yang, Shuai Cheng Li
Software Mentions: 7
Published: about 5 years ago

10.1186/1471-2105-7-3

Gene selection and classification of microarray data using random forest
Cited by: 2,230
Author(s): Ramón Dı́az-Uriarte, Sara Álvarez de Andrés
Software Mentions: 6
Published: almost 19 years ago

10.1186/1471-2105-8-328

GeneSrF and varSelRF: a web-based tool and R package for gene selection and classification using random forest
Cited by: 169
Author(s): Ramón Dı́az-Uriarte
Software Mentions: 6
Published: about 17 years ago

10.1371/journal.pone.0107801

A Robust and Accurate Method for Feature Selection and Prioritization from Multi-Class OMICs Data
Cited by: 31
Author(s): Vittorio Fortino, Pia Anneli Sofia Kinaret, Nanna Fyhrquist, Harri Alenius, Dario Greco
Software Mentions: 6
Published: about 10 years ago

10.1038/s41398-020-0781-2

Machine learning classification of ADHD and HC by multimodal serotonergic data
Cited by: 31
Author(s): Alexander Kautzky, Thomas Vanicek, Cécile Philippe, Georg S. Kranz, Wolfgang Wadsak, Markus Mitterhauser, Andréas Hartmann, Andreas Hahn, Marcus Hacker, Dan Rujescu, Siegfried Kasper, Rupert Lanzenberger
Software Mentions: 5
Published: over 4 years ago

10.1038/srep31587

Hepatic and serum lipid signatures specific to nonalcoholic steatohepatitis in murine models
Cited by: 33
Author(s): Franck Chiappini, Christophe Desterke, Justine Bertrand‐Michel, Catherine Guettier, François Le Naour
Software Mentions: 5
Published: over 8 years ago

10.7717/peerj.2628

Sewage treatment plant associated genetic differentiation in the blue mussel from the Baltic Sea and Swedish west coast
Cited by: 9
Author(s): Josefine Larsson, Mikael Lönn, Emma Lind, Justyna Świeżak, Katarzyna Smolarz, Mats Grahn
Software Mentions: 5
Published: about 8 years ago

10.1002/1878-0261.12651

Genetic alterations of malignant pleural mesothelioma: association with tumor heterogeneity and overall survival
Cited by: 66
Author(s): Lisa Quetel, Clément Meiller, Jean-Baptiste Assié, Yuna Blum, Sandrine Imbeaud, François Montagne, Robin Tranchant, Julien De Wolf, Stefano Caruso, Marie‐Christine Copin, Véronique Hofman, Laure Gibault, Cécile Badoual, Ecaterina Pintilie, Paul Hofman, I. Monnet, Arnaud Scherpereel, Françoise Le Pimpec‐Barthes, Jessica Zucman‐Rossi, Marie‐Claude Jaurand, Didier Jean
Software Mentions: 4
Published: over 4 years ago

10.1186/1471-2105-10-37

DFP: a Bioconductor package for fuzzy profile identification and gene reduction of microarray data
Cited by: 11
Author(s): Daniel Glez-Peña, Rodrigo Álvarez, Fernando Díaz, Florentino Fdez-Riverola
Software Mentions: 4
Published: almost 16 years ago

10.1371/journal.pone.0188408

Leaf herbivory imposes fitness costs mediated by hummingbird and insect pollinators
Cited by: 17
Author(s): Alexander Chautá, Susan R. Whitehead, Marisol Amaya–Márquez, Katja Poveda
Software Mentions: 4
Published: almost 7 years ago

10.18632/oncotarget.21921

Bacteriome and mycobiome associations in oral tongue cancer
Cited by: 75
Author(s): Pranab K. Mukherjee, Hannah Wang, Mauricio Retuerto, Huan Zhang, Brian B. Burkey, Mahmoud A. Ghannoum, Charis Eng
Software Mentions: 3
Published: about 7 years ago

10.12688/f1000research.7302.1

Integrated analysis of oral tongue squamous cell carcinoma identifies key variants and pathways linked to risk habits, HPV, clinical parameters and tumor recurrence
Cited by: 21
Author(s): Neeraja M. Krishnan, Saurabh Gupta, Vinayak Palve, Linu Varghese, Swetansu Pattnaik, Promil Jain, Costerwell Khyriem, Arun K Hariharan, Kunal Dhas, Jayalakshmi Nair, Manisha Pareek, Venkatesh K Prasad, Gangotri Siddappa, Amritha Suresh, Vikram D. Kekatpure, Moni Abraham Kuriakose, Binay Panda
Software Mentions: 3
Published: about 9 years ago

10.1186/1471-2105-11-50

FiGS: a filter-based gene selection workbench for microarray data
Cited by: 21
Author(s): Tae-Ho Hwang, Catherine Q. Sun, Taegyun Yun, Gwan‐Su Yi
Software Mentions: 3
Published: almost 15 years ago

10.1186/s12859-016-1292-2

Integration of metabolomics, lipidomics and clinical data using a machine learning method
Cited by: 45
Author(s): Animesh Acharjee, Zsuzsanna Ament, James A. West, Elizabeth Stanley, Julian L. Griffin
Software Mentions: 3
Published: about 8 years ago

10.1186/1471-2105-12-S1-S36

Integrated metabolome and transcriptome analysis of the NCI60 dataset
Cited by: 37
Author(s): Gang Su, Charles F. Burant, Christopher W.W. Beecher, Brian D. Athey, Fan Meng
Software Mentions: 3
Published: almost 14 years ago

10.1371/journal.pone.0164649

Identification of an Efficient Gene Expression Panel for Glioblastoma Classification
Cited by: 10
Author(s): Thomas J. Crisman, Ivette Zelaya, Dan R. Laks, Yining Zhao, Riki Kawaguchi, Fuying Gao, Harley I. Kornblum, Giovanni Coppola
Software Mentions: 3
Published: about 8 years ago

10.1186/1471-2164-12-S5-S1

Gene selection and classification for cancer microarray data based on machine learning and similarity measures
Cited by: 73
Author(s): Qingzhong Li, Andrew H. Sung, Zhongxue Chen, Jianzhong Liu, Lei Chen, Mengyu Qiao, Zhaohui Wang, Xudong Huang, Youping Deng
Software Mentions: 3
Published: almost 13 years ago

10.1371/journal.ppat.1002610

Induced Release of a Plant-Defense Volatile ‘Deceptively’ Attracts Insect Vectors to Plants Infected with a Bacterial Pathogen
Cited by: 225
Author(s): Rajinder S. Mann, Jared G. Ali, Sara L. Hermann, Siddharth Tiwari, Kirsten S. Pelz‐Stelinski, Hans T. Alborn, Lukasz L. Stelinski
Software Mentions: 2
Published: over 12 years ago

10.1186/2043-9113-2-13

Splitting random forest (SRF) for determining compact sets of genes that distinguish between cancer subtypes
Cited by: 5
Author(s): Xiaowei Guan, Mark R. Chance, Jill S. Barnholtz‐Sloan
Software Mentions: 2
Published: almost 13 years ago

10.3389/fimmu.2021.643529

Distinct Stromal and Immune Features Collectively Contribute to Long-Term Survival in Pancreatic Cancer
Cited by: 14
Author(s): Hassan Sadozai, Animesh Acharjee, Serenella Eppenberger‐Castori, Beat Gloor, Thomas Gruber, Mirjam Schenk, Eva Karamitopoulou
Software Mentions: 2
Published: almost 4 years ago

10.1186/1472-6947-13-S1-S3

Finding type 2 diabetes causal single nucleotide polymorphism combinations and functional modules from genome-wide association data
Cited by: 5
Author(s): Chang Soo Kang, Hyeonseung Yu, Gwan‐Su Yi
Software Mentions: 2
Published: over 11 years ago

10.1186/s12859-017-1650-8

Intervention in prediction measure: a new approach to assessing variable importance for random forests
Cited by: 29
Author(s): Irene Epifanio
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0256592

A comparison of prediction approaches for identifying prodromal Parkinson disease
Cited by: 5
Author(s): Mark N. Warden, Susan Nielsen, Alejandra Camacho‐Soto, Roman Garnett, Brad A. Racette
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.pone.0114522

Inferring Behavioral States of Grazing Livestock from High-Frequency Position Data Alone
Cited by: 29
Author(s): Hermel Homburger, Manuel K. Schneider, Sandra Hilfiker, Andreas Lüscher
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0246039

HDG-select: A novel GUI based application for gene selection and classification in high dimensional datasets
Cited by: 5
Author(s): Shilan S. Hameed, Rohayanti Hassan, Wan Haslina Hassan, Fahmi F. Muhammadsharif, Liza Abdul Latiff
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0059688

SNP-SNP Interaction Network in Angiogenesis Genes Associated with Prostate Cancer Aggressiveness
Cited by: 40
Author(s): Hui‐Yi Lin, Ernest K. Amankwah, Tung-Sung Tseng, Xiaotao Qu, Dung Tsa Chen, Jong Y. Park
Software Mentions: 2
Published: over 11 years ago

10.1155/2015/471371

Unbiased Feature Selection in Learning Random Forests for High-Dimensional Data
Cited by: 59
Author(s): Thanh-Tung Nguyen, Joshua Zhexue Huang, Thúy Thị Nguyễn
Software Mentions: 2
Published: almost 10 years ago

10.1186/s13040-017-0134-8

Multi-class computational evolution: development, benchmark evaluation and application to RNA-Seq biomarker discovery
Cited by: 10
Author(s): Nathaniel M. Crabtree, Jason H. Moore, John F. Bowyer, Nysia I. George
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0194212

Rapid and easy detection of low-level resistance to vancomycin in methicillin-resistant Staphylococcus aureus by matrix-assisted laser desorption ionization time-of-flight mass spectrometry
Cited by: 15
Author(s): Kota Asakura, Takuya Azechi, Hiroshi Sasano, Hidehito Matsui, Hideaki Hanaki, Motonobu Miyazaki, Tohru Takata, Miwa Sekine, Tomoiku Takaku, Tomonori Ochiai, Norio Komatsu, Keigo Shibayama, Yuki Katayama, Koji Yahara
Software Mentions: 2
Published: over 6 years ago

10.3390/ani8010012

Predicting Lameness in Sheep Activity Using Tri-Axial Acceleration Signals
Cited by: 53
Author(s): Jamie Barwick, David Lamb, Robin Dobos, Derek Schneider, Mitchell Welch, Mark Trotter
Software Mentions: 2
Published: almost 7 years ago

10.1038/srep32476

In silico identification of enhancers on the basis of a combination of transcription factor binding motif occurrences
Cited by: 8
Author(s): Yaping Fang, Yunlong Wang, Qin Zhu, Jia Wang, Guo Liang Li
Software Mentions: 1
Published: about 8 years ago

10.1186/1471-2105-12-450

Random KNN feature selection - a fast and stable alternative to Random Forests
Cited by: 91
Author(s): Shengqiao Li, E. James Harner, Donald A. Adjeroh
Software Mentions: 1
Published: about 13 years ago

10.1186/1471-2105-9-319

A comprehensive comparison of random forests and support vector machines for microarray-based cancer classification
Cited by: 520
Author(s): Alexander Statnikov, Lily Wang, Constantin F. Aliferis
Software Mentions: 1
Published: over 16 years ago

10.1186/s12864-020-6675-0

microRNA profiling in the Weddell seal suggests novel regulatory mechanisms contributing to diving adaptation
Cited by: 7
Author(s): Luca Penso-Dolfin, Wilfried Haerty, Allyson G. Hindle, Federica Di Palma
Software Mentions: 1
Published: over 4 years ago

10.1186/1471-2164-16-S11-S3

Evaluation of data discretization methods to derive platform independent isoform expression signatures for multi-class tumor subtyping
Cited by: 15
Author(s): Su-Young Jung, Yingtao Bi, Ramana V. Davuluri
Software Mentions: 1
Published: about 9 years ago

10.1186/s12920-016-0194-5

Discovering gene expression signatures responding to tyrosine kinase inhibitor treatment in chronic myeloid leukemia
Cited by: 8
Author(s): Kihoon Cha, Yi Li, Gwan‐Su Yi
Software Mentions: 1
Published: over 8 years ago

10.1186/s12920-020-00826-6

A random forest based biomarker discovery and power analysis framework for diagnostics research
Cited by: 35
Author(s): Animesh Acharjee, Joseph Larkman, Yuanwei Xu, Victor Roth Cardoso, Georgios V. Gkoutos
Software Mentions: 1
Published: about 4 years ago

10.1186/1752-0509-6-40

Spice: discovery of phenotype-determining component interplays
Cited by: 13
Author(s): Zhengzhang Chen, K. A. Padmanabhan, Andrea M. Rocha, Katie Shpanskaya, James R. Mihelcic, Kathleen M. Scott, Nagiza F. Samatova
Software Mentions: 1
Published: over 12 years ago

10.1007/s11306-017-1166-2

The translation of lipid profiles to nutritional biomarkers in the study of infant metabolism
Cited by: 44
Author(s): Animesh Acharjee, Philippa Prentice, Carlo L. Acerini, James M. Smith, Ieuan A. Hughes, Ken K. Ong, Julian L. Griffin, David B. Dunger, Albert Koulman
Software Mentions: 1
Published: almost 8 years ago

10.1186/2049-2618-1-11

A comprehensive evaluation of multicategory classification methods for microbiomic data
Cited by: 157
Author(s): Alexander Statnikov, Mikael Henaff, Varun Narendra, Kranti Konganti, Zhiguo Li, Liying Yang, Zhiheng Pei, Martin J. Blaser, Constantin F. Aliferis, Alexander V. Alekseyenko
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pcbi.1003254

Feature Selection Methods for Identifying Genetic Determinants of Host Species in RNA Viruses
Cited by: 19
Author(s): Ricardo Aguás, Neil M. Ferguson
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0202344

Machine learning models in electronic health records can outperform conventional survival models for predicting patient mortality in coronary artery disease
Cited by: 126
Author(s): Andrew J. Steele, Spiros Denaxas, Anoop D Shah, Harry Hemingway, Nicholas M. Luscombe
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0068876

Unique Gene Expression and MR T2 Relaxometry Patterns Define Chronic Murine Dextran Sodium Sulphate Colitis as a Model for Connective Tissue Changes in Human Crohn’s Disease
Cited by: 39
Author(s): Christine Breynaert, Tom Dresselaers, Clémentine Perrier, Ingrid Arijs, Jonathan Cremer, Leentje Van Lommel, Kristel Van Steen, Marc Ferrante, Frans Schuit, Séverine Vermeire, Paul Rutgeerts, Uwe Himmelreich, Jan L. Ceuppens, Karel Geboes, Gert Van Assche
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0045585

In Silico Classification of Proteins from Acidic and Neutral Cytoplasms
Cited by: 4
Author(s): Yaping Fang, C. Russell Middaugh, Jianwen Fang
Software Mentions: 1
Published: about 12 years ago

10.3389/fnagi.2018.00406

Prediction of Autopsy Verified Neuropathological Change of Alzheimer’s Disease Using Machine Learning and MRI
Cited by: 23
Author(s): Alexander Kautzky, René Seiger, Andreas Hahn, Peter Fischer, Wolfgang Krampla, Siegfried Kasper, Gábor G. Kovács, Rupert Lanzenberger
Software Mentions: 1
Published: almost 6 years ago

10.3389/fncom.2020.596531

Biosignal-Based Attention Monitoring to Support Nuclear Operator Safety-Relevant Tasks
Cited by: 4
Author(s): Junghwan Kim, Chul Min Kim, Eun-Soo Jung, Man‐Sung Yim
Software Mentions: 1
Published: almost 4 years ago

10.3390/s17112537

Maize Cropping Systems Mapping Using RapidEye Observations in Agro-Ecological Landscapes in Kenya
Cited by: 20
Author(s): Kyalo Richard, Elfatih M. Abdel‐Rahman, Sevgan Subramanian, Johnson O. Nyasani, Michael Thiel, Hosein Jozani, Christian Borgemeister, Tobias Landmann
Software Mentions: 1
Published: about 7 years ago

10.3390/s20216365

An Investigation of Insider Threat Mitigation Based on EEG Signal Classification
Cited by: 7
Author(s): Junghwan Kim, Chul Min Kim, Man‐Sung Yim
Software Mentions: 1
Published: about 4 years ago

Projects: cran: varSelRF

Papers Mentioning varSelRF 53