Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: varSelRF
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/varSelRF
Variable Selection using Random Forests
9 versions
Latest release: over 7 years ago
1 dependent package
564 downloads last month
Papers Mentioning varSelRF 53
10.1002/ece3.5599
Linking pollen foraging of megachilid bees to their nest bacterial microbiotaCited by: 29
Author(s): Anna Voulgari‐Kokota, Markus J. Ankenbrand, Gudrun Grimmer, Ingolf Steffan‐Dewenter, Alexander Keller
Software Mentions: 10
Published: about 5 years ago
10.1002/1878-0261.12850
High‐throughput proteomics of breast cancer interstitial fluid: identification of tumor subtype‐specific serologically relevant biomarkersCited by: 13
Author(s): Thilde Terkelsen, Maria Pernemalm, Pavel Gromov, Anna‐Lise Børresen‐Dale, Anders Krogh, Vilde Drageset Haakensen, Janne Lethiö, Elena Papaleo, Irina Gromova
Software Mentions: 10
Published: almost 4 years ago
10.1186/s13104-016-1945-2
Feature selection and validated predictive performance in the domain of Legionella pneumophila: a comparative studyCited by: 9
Author(s): Tjeerd van der Ploeg, Ewout W. Steyerberg
Software Mentions: 9
Published: over 8 years ago
10.1038/srep46658
Metabolism dysregulation induces a specific lipid signature of nonalcoholic steatohepatitis in patientsCited by: 148
Author(s): Franck Chiappini, Audrey Coilly, Hanane Kadar, Philippe Gual, Albert Tran, Christophe Desterke, Didier Samuel, Jean‐Charles Duclos‐Vallée, David Touboul, Justine Bertrand‐Michel, Alain Brunelle, Catherine Guettier, François Le Naour
Software Mentions: 8
Published: over 7 years ago
10.3390/genes10100778
DNA Methylation Markers for Pan-Cancer Prediction by Deep LearningCited by: 48
Author(s): Biao Liu, Yulu Liu, Xingxin Pan, Mengyao Li, Shuang Yang, Shuai Cheng Li
Software Mentions: 7
Published: about 5 years ago
10.1186/1471-2105-7-3
Gene selection and classification of microarray data using random forestCited by: 2,230
Author(s): Ramón Dı́az-Uriarte, Sara Álvarez de Andrés
Software Mentions: 6
Published: almost 19 years ago
10.1186/1471-2105-8-328
GeneSrF and varSelRF: a web-based tool and R package for gene selection and classification using random forestCited by: 169
Author(s): Ramón Dı́az-Uriarte
Software Mentions: 6
Published: about 17 years ago
10.1371/journal.pone.0107801
A Robust and Accurate Method for Feature Selection and Prioritization from Multi-Class OMICs DataCited by: 31
Author(s): Vittorio Fortino, Pia Anneli Sofia Kinaret, Nanna Fyhrquist, Harri Alenius, Dario Greco
Software Mentions: 6
Published: about 10 years ago
10.1038/s41398-020-0781-2
Machine learning classification of ADHD and HC by multimodal serotonergic dataCited by: 31
Author(s): Alexander Kautzky, Thomas Vanicek, Cécile Philippe, Georg S. Kranz, Wolfgang Wadsak, Markus Mitterhauser, Andréas Hartmann, Andreas Hahn, Marcus Hacker, Dan Rujescu, Siegfried Kasper, Rupert Lanzenberger
Software Mentions: 5
Published: over 4 years ago
10.1038/srep31587
Hepatic and serum lipid signatures specific to nonalcoholic steatohepatitis in murine modelsCited by: 33
Author(s): Franck Chiappini, Christophe Desterke, Justine Bertrand‐Michel, Catherine Guettier, François Le Naour
Software Mentions: 5
Published: about 8 years ago
10.7717/peerj.2628
Sewage treatment plant associated genetic differentiation in the blue mussel from the Baltic Sea and Swedish west coastCited by: 9
Author(s): Josefine Larsson, Mikael Lönn, Emma Lind, Justyna Świeżak, Katarzyna Smolarz, Mats Grahn
Software Mentions: 5
Published: about 8 years ago
10.1002/1878-0261.12651
Genetic alterations of malignant pleural mesothelioma: association with tumor heterogeneity and overall survivalCited by: 66
Author(s): Lisa Quetel, Clément Meiller, Jean-Baptiste Assié, Yuna Blum, Sandrine Imbeaud, François Montagne, Robin Tranchant, Julien De Wolf, Stefano Caruso, Marie‐Christine Copin, Véronique Hofman, Laure Gibault, Cécile Badoual, Ecaterina Pintilie, Paul Hofman, I. Monnet, Arnaud Scherpereel, Françoise Le Pimpec‐Barthes, Jessica Zucman‐Rossi, Marie‐Claude Jaurand, Didier Jean
Software Mentions: 4
Published: over 4 years ago
10.1186/1471-2105-10-37
DFP: a Bioconductor package for fuzzy profile identification and gene reduction of microarray dataCited by: 11
Author(s): Daniel Glez-Peña, Rodrigo Álvarez, Fernando Díaz, Florentino Fdez-Riverola
Software Mentions: 4
Published: almost 16 years ago
10.1371/journal.pone.0188408
Leaf herbivory imposes fitness costs mediated by hummingbird and insect pollinatorsCited by: 17
Author(s): Alexander Chautá, Susan R. Whitehead, Marisol Amaya–Márquez, Katja Poveda
Software Mentions: 4
Published: almost 7 years ago
10.18632/oncotarget.21921
Bacteriome and mycobiome associations in oral tongue cancerCited by: 75
Author(s): Pranab K. Mukherjee, Hannah Wang, Mauricio Retuerto, Huan Zhang, Brian B. Burkey, Mahmoud A. Ghannoum, Charis Eng
Software Mentions: 3
Published: about 7 years ago
10.12688/f1000research.7302.1
Integrated analysis of oral tongue squamous cell carcinoma identifies key variants and pathways linked to risk habits, HPV, clinical parameters and tumor recurrenceCited by: 21
Author(s): Neeraja M. Krishnan, Saurabh Gupta, Vinayak Palve, Linu Varghese, Swetansu Pattnaik, Promil Jain, Costerwell Khyriem, Arun K Hariharan, Kunal Dhas, Jayalakshmi Nair, Manisha Pareek, Venkatesh K Prasad, Gangotri Siddappa, Amritha Suresh, Vikram D. Kekatpure, Moni Abraham Kuriakose, Binay Panda
Software Mentions: 3
Published: about 9 years ago
10.1186/1471-2105-11-50
FiGS: a filter-based gene selection workbench for microarray dataCited by: 21
Author(s): Tae-Ho Hwang, Catherine Q. Sun, Taegyun Yun, Gwan‐Su Yi
Software Mentions: 3
Published: almost 15 years ago
10.1186/s12859-016-1292-2
Integration of metabolomics, lipidomics and clinical data using a machine learning methodCited by: 45
Author(s): Animesh Acharjee, Zsuzsanna Ament, James A. West, Elizabeth Stanley, Julian L. Griffin
Software Mentions: 3
Published: about 8 years ago
10.1186/1471-2105-12-S1-S36
Integrated metabolome and transcriptome analysis of the NCI60 datasetCited by: 37
Author(s): Gang Su, Charles F. Burant, Christopher W.W. Beecher, Brian D. Athey, Fan Meng
Software Mentions: 3
Published: over 13 years ago
10.1371/journal.pone.0164649
Identification of an Efficient Gene Expression Panel for Glioblastoma ClassificationCited by: 10
Author(s): Thomas J. Crisman, Ivette Zelaya, Dan R. Laks, Yining Zhao, Riki Kawaguchi, Fuying Gao, Harley I. Kornblum, Giovanni Coppola
Software Mentions: 3
Published: almost 8 years ago
10.1186/1471-2164-12-S5-S1
Gene selection and classification for cancer microarray data based on machine learning and similarity measuresCited by: 73
Author(s): Qingzhong Li, Andrew H. Sung, Zhongxue Chen, Jianzhong Liu, Lei Chen, Mengyu Qiao, Zhaohui Wang, Xudong Huang, Youping Deng
Software Mentions: 3
Published: almost 13 years ago
10.1371/journal.ppat.1002610
Induced Release of a Plant-Defense Volatile ‘Deceptively’ Attracts Insect Vectors to Plants Infected with a Bacterial PathogenCited by: 225
Author(s): Rajinder S. Mann, Jared G. Ali, Sara L. Hermann, Siddharth Tiwari, Kirsten S. Pelz‐Stelinski, Hans T. Alborn, Lukasz L. Stelinski
Software Mentions: 2
Published: over 12 years ago
10.1186/2043-9113-2-13
Splitting random forest (SRF) for determining compact sets of genes that distinguish between cancer subtypesCited by: 5
Author(s): Xiaowei Guan, Mark R. Chance, Jill S. Barnholtz‐Sloan
Software Mentions: 2
Published: almost 13 years ago
10.3389/fimmu.2021.643529
Distinct Stromal and Immune Features Collectively Contribute to Long-Term Survival in Pancreatic CancerCited by: 14
Author(s): Hassan Sadozai, Animesh Acharjee, Serenella Eppenberger‐Castori, Beat Gloor, Thomas Gruber, Mirjam Schenk, Eva Karamitopoulou
Software Mentions: 2
Published: over 3 years ago
10.1186/1472-6947-13-S1-S3
Finding type 2 diabetes causal single nucleotide polymorphism combinations and functional modules from genome-wide association dataCited by: 5
Author(s): Chang Soo Kang, Hyeonseung Yu, Gwan‐Su Yi
Software Mentions: 2
Published: over 11 years ago
10.1186/s12859-017-1650-8
Intervention in prediction measure: a new approach to assessing variable importance for random forestsCited by: 29
Author(s): Irene Epifanio
Software Mentions: 2
Published: over 7 years ago
10.1371/journal.pone.0256592
A comparison of prediction approaches for identifying prodromal Parkinson diseaseCited by: 5
Author(s): Mark N. Warden, Susan Nielsen, Alejandra Camacho‐Soto, Roman Garnett, Brad A. Racette
Software Mentions: 2
Published: about 3 years ago
10.1371/journal.pone.0114522
Inferring Behavioral States of Grazing Livestock from High-Frequency Position Data AloneCited by: 29
Author(s): Hermel Homburger, Manuel K. Schneider, Sandra Hilfiker, Andreas Lüscher
Software Mentions: 2
Published: almost 10 years ago
10.1371/journal.pone.0246039
HDG-select: A novel GUI based application for gene selection and classification in high dimensional datasetsCited by: 5
Author(s): Shilan S. Hameed, Rohayanti Hassan, Wan Haslina Hassan, Fahmi F. Muhammadsharif, Liza Abdul Latiff
Software Mentions: 2
Published: almost 4 years ago
10.1371/journal.pone.0059688
SNP-SNP Interaction Network in Angiogenesis Genes Associated with Prostate Cancer AggressivenessCited by: 40
Author(s): Hui‐Yi Lin, Ernest K. Amankwah, Tung-Sung Tseng, Xiaotao Qu, Dung Tsa Chen, Jong Y. Park
Software Mentions: 2
Published: over 11 years ago
10.1155/2015/471371
Unbiased Feature Selection in Learning Random Forests for High-Dimensional DataCited by: 59
Author(s): Thanh-Tung Nguyen, Joshua Zhexue Huang, Thúy Thị Nguyễn
Software Mentions: 2
Published: almost 10 years ago
10.1186/s13040-017-0134-8
Multi-class computational evolution: development, benchmark evaluation and application to RNA-Seq biomarker discoveryCited by: 10
Author(s): Nathaniel M. Crabtree, Jason H. Moore, John F. Bowyer, Nysia I. George
Software Mentions: 2
Published: over 7 years ago
10.1371/journal.pone.0194212
Rapid and easy detection of low-level resistance to vancomycin in methicillin-resistant Staphylococcus aureus by matrix-assisted laser desorption ionization time-of-flight mass spectrometryCited by: 15
Author(s): Kota Asakura, Takuya Azechi, Hiroshi Sasano, Hidehito Matsui, Hideaki Hanaki, Motonobu Miyazaki, Tohru Takata, Miwa Sekine, Tomoiku Takaku, Tomonori Ochiai, Norio Komatsu, Keigo Shibayama, Yuki Katayama, Koji Yahara
Software Mentions: 2
Published: over 6 years ago
10.3390/ani8010012
Predicting Lameness in Sheep Activity Using Tri-Axial Acceleration SignalsCited by: 53
Author(s): Jamie Barwick, David Lamb, Robin Dobos, Derek Schneider, Mitchell Welch, Mark Trotter
Software Mentions: 2
Published: almost 7 years ago
10.1038/srep32476
In silico identification of enhancers on the basis of a combination of transcription factor binding motif occurrencesCited by: 8
Author(s): Yaping Fang, Yunlong Wang, Qin Zhu, Jia Wang, Guo Liang Li
Software Mentions: 1
Published: about 8 years ago
10.1186/1471-2105-12-450
Random KNN feature selection - a fast and stable alternative to Random ForestsCited by: 91
Author(s): Shengqiao Li, E. James Harner, Donald A. Adjeroh
Software Mentions: 1
Published: almost 13 years ago
10.1186/1471-2105-9-319
A comprehensive comparison of random forests and support vector machines for microarray-based cancer classificationCited by: 520
Author(s): Alexander Statnikov, Lily Wang, Constantin F. Aliferis
Software Mentions: 1
Published: over 16 years ago
10.1186/s12864-020-6675-0
microRNA profiling in the Weddell seal suggests novel regulatory mechanisms contributing to diving adaptationCited by: 7
Author(s): Luca Penso-Dolfin, Wilfried Haerty, Allyson G. Hindle, Federica Di Palma
Software Mentions: 1
Published: over 4 years ago
10.1186/1471-2164-16-S11-S3
Evaluation of data discretization methods to derive platform independent isoform expression signatures for multi-class tumor subtypingCited by: 15
Author(s): Su-Young Jung, Yingtao Bi, Ramana V. Davuluri
Software Mentions: 1
Published: almost 9 years ago
10.1186/s12920-016-0194-5
Discovering gene expression signatures responding to tyrosine kinase inhibitor treatment in chronic myeloid leukemiaCited by: 8
Author(s): Kihoon Cha, Yi Li, Gwan‐Su Yi
Software Mentions: 1
Published: over 8 years ago
10.1186/s12920-020-00826-6
A random forest based biomarker discovery and power analysis framework for diagnostics researchCited by: 35
Author(s): Animesh Acharjee, Joseph Larkman, Yuanwei Xu, Victor Roth Cardoso, Georgios V. Gkoutos
Software Mentions: 1
Published: almost 4 years ago
10.1186/1752-0509-6-40
Spice: discovery of phenotype-determining component interplaysCited by: 13
Author(s): Zhengzhang Chen, K. A. Padmanabhan, Andrea M. Rocha, Katie Shpanskaya, James R. Mihelcic, Kathleen M. Scott, Nagiza F. Samatova
Software Mentions: 1
Published: over 12 years ago
10.1007/s11306-017-1166-2
The translation of lipid profiles to nutritional biomarkers in the study of infant metabolismCited by: 44
Author(s): Animesh Acharjee, Philippa Prentice, Carlo L. Acerini, James M. Smith, Ieuan A. Hughes, Ken K. Ong, Julian L. Griffin, David B. Dunger, Albert Koulman
Software Mentions: 1
Published: almost 8 years ago
10.1186/2049-2618-1-11
A comprehensive evaluation of multicategory classification methods for microbiomic dataCited by: 157
Author(s): Alexander Statnikov, Mikael Henaff, Varun Narendra, Kranti Konganti, Zhiguo Li, Liying Yang, Zhiheng Pei, Martin J. Blaser, Constantin F. Aliferis, Alexander V. Alekseyenko
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pcbi.1003254
Feature Selection Methods for Identifying Genetic Determinants of Host Species in RNA VirusesCited by: 19
Author(s): Ricardo Aguás, Neil M. Ferguson
Software Mentions: 1
Published: about 11 years ago
10.1371/journal.pone.0202344
Machine learning models in electronic health records can outperform conventional survival models for predicting patient mortality in coronary artery diseaseCited by: 126
Author(s): Andrew J. Steele, Spiros Denaxas, Anoop D Shah, Harry Hemingway, Nicholas M. Luscombe
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.pone.0068876
Unique Gene Expression and MR T2 Relaxometry Patterns Define Chronic Murine Dextran Sodium Sulphate Colitis as a Model for Connective Tissue Changes in Human Crohn’s DiseaseCited by: 39
Author(s): Christine Breynaert, Tom Dresselaers, Clémentine Perrier, Ingrid Arijs, Jonathan Cremer, Leentje Van Lommel, Kristel Van Steen, Marc Ferrante, Frans Schuit, Séverine Vermeire, Paul Rutgeerts, Uwe Himmelreich, Jan L. Ceuppens, Karel Geboes, Gert Van Assche
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0045585
In Silico Classification of Proteins from Acidic and Neutral CytoplasmsCited by: 4
Author(s): Yaping Fang, C. Russell Middaugh, Jianwen Fang
Software Mentions: 1
Published: about 12 years ago
10.3389/fnagi.2018.00406
Prediction of Autopsy Verified Neuropathological Change of Alzheimer’s Disease Using Machine Learning and MRICited by: 23
Author(s): Alexander Kautzky, René Seiger, Andreas Hahn, Peter Fischer, Wolfgang Krampla, Siegfried Kasper, Gábor G. Kovács, Rupert Lanzenberger
Software Mentions: 1
Published: almost 6 years ago
10.3389/fncom.2020.596531
Biosignal-Based Attention Monitoring to Support Nuclear Operator Safety-Relevant TasksCited by: 4
Author(s): Junghwan Kim, Chul Min Kim, Eun-Soo Jung, Man‐Sung Yim
Software Mentions: 1
Published: almost 4 years ago
10.3390/s17112537
Maize Cropping Systems Mapping Using RapidEye Observations in Agro-Ecological Landscapes in KenyaCited by: 20
Author(s): Kyalo Richard, Elfatih M. Abdel‐Rahman, Sevgan Subramanian, Johnson O. Nyasani, Michael Thiel, Hosein Jozani, Christian Borgemeister, Tobias Landmann
Software Mentions: 1
Published: about 7 years ago
10.3390/s20216365
An Investigation of Insider Threat Mitigation Based on EEG Signal ClassificationCited by: 7
Author(s): Junghwan Kim, Chul Min Kim, Man‐Sung Yim
Software Mentions: 1
Published: almost 4 years ago