cran: GD | Projects | Ecosyste.ms: Papers

10.1186/s12870-014-0315-2

The chickpea genomic web resource: visualization and analysis of the desi-type Cicer arietinum nuclear genome for comparative exploration of legumes
Cited by: 8
Author(s): Gopal Misra, Piyush Priya, Nitesh Bandhiwal, Neha Bareja, Mukesh Jain, Sabhyata Bhatia, Debasis Chattopadhyay, Akhilesh K. Tyagi, Gitanjali Yadav
Software Mentions: 6
Published: about 10 years ago

10.1186/1471-2105-10-391

JANE: efficient mapping of prokaryotic ESTs and variable length sequence reads on related template genomes
Cited by: 6
Author(s): Chunguang Liang, Alexander Schmid, María José López‐Sánchez, Andrés Moya, Roy Gross, Jörg Bernhardt, Thomas Dandekar
Software Mentions: 5
Published: about 15 years ago

10.1186/1471-2105-9-548

GeneChaser: Identifying all biological and clinical conditions in which genes of interest are differentially expressed
Cited by: 34
Author(s): Rong Chen, Rohan Mallelwar, Ajit Thosar, Shivkumar Venkatasubrahmanyam, Atul J. Butte
Software Mentions: 4
Published: about 16 years ago

10.1093/bioinformatics/btt294

SVGenes: a library for rendering genomic features in scalable vector graphic format
Cited by: 2
Author(s): Graham J. Etherington, Dan MacLean
Software Mentions: 4
Published: over 11 years ago

10.1186/s12859-016-1055-0

DensityMap: a genome viewer for illustrating the densities of features
Cited by: 13
Author(s): Sébastien Guizard, Benoît Piégu, Yves Bigot
Software Mentions: 4
Published: over 8 years ago

10.1186/1471-2105-8-117

Colony size measurement of the yeast gene deletion strains for functional genomics
Cited by: 51
Author(s): Negar Memarian, Matthew Jessulat, Javad Alirezaie, Nadereh Mir-Rashed, Jianhua Xu, Mehri Zareie, Myron L. Smith, Ashkan Golshani
Software Mentions: 3
Published: over 17 years ago

10.1186/1471-2164-9-561

PlantPAN: Plant promoter analysis navigator, for identifying combinatorial cis-regulatory elements with distance constraint in plant gene groups
Cited by: 250
Author(s): Wen Chi Chang, Tzong-Yi Lee, Hsien Da Huang, His Yuan Huang, Rong Pan
Software Mentions: 3
Published: about 16 years ago

10.1186/1758-2946-1-9

The Spectral Game: leveraging Open Data and crowdsourcing for education
Cited by: 46
Author(s): Jean‐Claude Bradley, Robert J. Lancashire, Andrew S. I. D. Lang, Antony J. Williams
Software Mentions: 3
Published: over 15 years ago

10.1186/s13059-016-0924-1

JBrowse: a dynamic web platform for genome visualization and analysis
Cited by: 595
Author(s): Robert Buels, Eric Yao, Colin Diesh, Richard D. Hayes, Monica Muñoz-Torres, Gregg Helt, David Goodstein, Christine G. Elsik, Suzanna Lewis, Lincoln Stein, Ian Holmes
Software Mentions: 3
Published: over 8 years ago

10.1186/1475-925X-13-92

Sparse CT reconstruction based on multi-direction anisotropic total variation (MDATV)
Cited by: 16
Author(s): Hongxiao Li, Xiao Chen, Yi Wang, Zhongxing Zhou, Quing Zhu, Yu Dong
Software Mentions: 3
Published: over 10 years ago

10.3390/s21124054

HyAdamC: A New Adam-Based Hybrid Optimization Algorithm for Convolution Neural Networks
Cited by: 17
Author(s): Kyung Soo Kim, Yong-Suk Choi
Software Mentions: 3
Published: over 3 years ago

10.1186/1471-2105-5-176

Cited by: 42
Author(s): Charu G. Kumar, Richard D. LeDuc, George Gong, Levan Roinishivili, Harris A. Lewin, Lei Liu
Software Mentions: 3
Published: almost 21 years ago

10.1128/JVI.00940-20

Broad and Differential Animal Angiotensin-Converting Enzyme 2 Receptor Usage by SARS-CoV-2
Cited by: 125
Author(s): Xuesen Zhao, Danying Chen, Robert Szabla, Mou‐Xiong Zheng, Guoli Li, Pengcheng Du, Shuangli Zheng, Xinglin Li, Chuan Song, Rui Li, Ju‐Tao Guo, M.S. Junop, Hui Zeng, Hanxin Lin
Software Mentions: 2
Published: over 4 years ago

10.1186/1471-2105-10-31

Genome Projector: zoomable genome map with multiple views
Cited by: 41
Author(s): Kazuharu Arakawa, Satoshi Tamaki, Nobuaki Kono, Nobuhiro Kido, Keita Ikegami, Ryu Ogawa, Masaru Tomita
Software Mentions: 2
Published: almost 16 years ago

10.1186/1471-2105-11-485

SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data
Cited by: 1,148
Author(s): Murray P. Cox, Daniel A. Peterson, Patrick J. Biggs
Software Mentions: 2
Published: about 14 years ago

10.1186/1471-2105-7-513

JUICE: a data management system that facilitates the analysis of large volumes of information in an EST project workflow
Cited by: 11
Author(s): Mariano Latorre, Herman Silva, Juan Saba, Carito Guziołowski, Paula Vizoso, Verónica Martínez, Jonathan Maldonado, Andrea Morales, Rodrigo Caroca, Verónica Cambiazo, Reinaldo Campos-Vargas, Maurício González, Ariel Orellana, Julio Retamales, Lee A. Meisel
Software Mentions: 2
Published: about 18 years ago

10.1186/s12864-020-07217-2

GCViT: a method for interactive, genome-wide visualization of resequencing and SNP array data
Cited by: 4
Author(s): Andrew Wilkey, Anne V. Brown, Steven B. Cannon, Ethalinda K. S. Cannon
Software Mentions: 2
Published: about 4 years ago

10.1186/1471-2164-9-105

MADIBA: A web server toolkit for biological interpretation of Plasmodium and plant gene clusters
Cited by: 25
Author(s): Philip Law, Clotilde Claudel‐Renard, Fourie Joubert, Abraham I. Louw, David Kenneth Berger
Software Mentions: 2
Published: almost 17 years ago

10.1186/1471-2164-13-85

AtPAN: an integrated system for reconstructing transcriptional regulatory networks in Arabidopsis thaliana
Cited by: 18
Author(s): Yi An Chen, Ying Chi Wen, Wen Chi Chang
Software Mentions: 2
Published: almost 13 years ago

10.1186/1471-2164-13-S1-S3

GPMiner: an integrated system for mining combinatorial cis-regulatory elements in mammalian gene group
Cited by: 51
Author(s): Tzong-Yi Lee, Wen Chi Chang, Justin Bo Kai Hsu, Tzu Hao Chang, Dray Ming Shien
Software Mentions: 2
Published: almost 13 years ago

10.1186/1471-2369-13-23

CDKD: a clinical database of kidney diseases
Cited by: 12
Author(s): Sombir Singh, Adeel Malik, Ahmad Firoz, Vivekanand Jha
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0004162

Molecular Time-Course and the Metabolic Basis of Entry into Dauer in Caenorhabditis elegans
Cited by: 57
Author(s): Pan Young Jeong, Min Seok Kwon, Hyoe Jin Joo, Young Ki Paik
Software Mentions: 2
Published: almost 16 years ago

10.1186/1758-2946-1-20

The PubChem chemical structure sketcher
Cited by: 80
Author(s): Wolf‐Dietrich Ihlenfeldt, Evan Bolton, Stephen H. Bryant
Software Mentions: 2
Published: about 15 years ago

10.3390/s16111924

Geometric Distribution-Based Readers Scheduling Optimization Algorithm Using Artificial Immune System
Cited by: 1
Author(s): Litian Duan, Zizhong John Wang, Duan Fu
Software Mentions: 2
Published: about 8 years ago

10.1186/1751-0473-4-6

A web server for interactive and zoomable Chaos Game Representation images
Cited by: 4
Author(s): Kazuharu Arakawa, Kazuki Oshita, Masaru Tomita
Software Mentions: 2
Published: over 15 years ago

10.1016/j.addbeh.2017.03.020

Latent class analysis of gambling subtypes and impulsive/compulsive associations: Time to rethink diagnostic boundaries for gambling disorder?
Cited by: 60
Author(s): Samuel R. Chamberlain, Jan Štochl, Sarah A. Redden, Brian L. Odlaug, Jon E. Grant
Software Mentions: 2
Published: over 7 years ago

10.1186/1756-0500-6-68

SHIFT: Server for hidden stops analysis in frame-shifted translation
Cited by: 9
Author(s): A. Gupta, Tiratha Raj Singh
Software Mentions: 1
Published: almost 12 years ago

10.1186/1471-2105-10-60

Motivated Proteins: A web application for studying small three-dimensional protein motifs
Cited by: 26
Author(s): David P. Leader, E. James Milner‐White
Software Mentions: 1
Published: almost 16 years ago

10.1186/s12938-018-0537-x

Photoacoustic imaging reconstruction using combined nonlocal patch and total-variation regularization for straight-line scanning
Cited by: 7
Author(s): Jin Wang, Yuanyuan Wang
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2105-7-525

iHAP – integrated haplotype analysis pipeline for characterizing the haplotype structure of genes
Cited by: 12
Author(s): Chun Meng Song, Boon Huat Yeo, Erwin Tantoso, Yuchen Yang, Yun Ping Lim, Kuo Bin Li, G. Rajagopal
Software Mentions: 1
Published: about 18 years ago

10.3390/ma13122693

Development of a 3-D Physical Dynamics Monitoring System Using OCM with DVC for Quantification of Sprouting Endothelial Cells Interacting with a Collagen Matrix
Cited by: 2
Author(s): Yong Guk Kang, Hwanseok Jang, Yongdoo Park, Beop Min Kim
Software Mentions: 1
Published: over 4 years ago

10.1002/mgg3.608

A novel<i>ABCA12</i>pathologic variant identified in an Ecuadorian harlequin ichthyosis patient: A step forward in genotype‐phenotype correlations
Cited by: 2
Author(s): Martha Montalván-Suárez, Uxia Esperón-Moldes, L. Rodríguez-Pazos, Andrés Ordóñez-Ugalde, F. Moscoso, N. Ugalde-Noritz, Luis Santomé, Laura Fachal, Daniel Tettamanti-Miranda, Juan-Carlos Ruíz, Manuel Ginarte, Ana Vega
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0156580

A D-Shaped Bileaflet Bioprosthesis which Replicates Physiological Left Ventricular Flow Patterns
Cited by: 8
Author(s): Sock Hwee Tan, Sangho Kim, Jimmy Kim Fatt Hon, Hwa Liang Leo
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0231719

GD-StarGAN: Multi-domain image-to-image translation in garment design
Cited by: 4
Author(s): Yangyun Shen, Runnan Huang, Wenmei Huang
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0197033

Computer-assisted surgery compared to fluoroscopy in curettage of atypical cartilaginous tumors / chondrosarcoma grade 1 in the long bones
Cited by: 4
Author(s): Jasper G Gerbers, Edwin F Dierselhuis, Martin Stevens, Joris J. W. Ploegmakers, Sjoerd K. Bulstra, Paul C. Jutte
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0258407

The regional differences and influencing factors of tourism development on Hainan Island, China
Cited by: 11
Author(s): Shengrui Zhang, Hongrun Ju
Software Mentions: 1
Published: about 3 years ago

10.1186/1471-2105-10-286

ICRPfinder: a fast pattern design algorithm for coding sequences and its application in finding potential restriction enzyme recognition sites
Cited by: 2
Author(s): Chao Li, Yuhua Li, Xiangmin Zhang, Phillip Stafford, Valentin Dinu
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0190192

Gaussian decomposition of high-resolution melt curve derivatives for measuring genome-editing efficiency
Cited by: 5
Author(s): Michail Zaboikin, Carl E. Freter, Narasimhachar Srinivasakumar
Software Mentions: 1
Published: almost 7 years ago

10.1093/database/bat043

GoSynthetic database tool to analyse natural and engineered molecular processes
Cited by: 4
Author(s): Chunguang Liang, Beate Krüger, Thomas Dandekar
Software Mentions: 1
Published: almost 12 years ago

10.3390/e21020189

Nonrigid Medical Image Registration Using an Information Theoretic Measure Based on Arimoto Entropy with Gradient Distributions
Cited by: 4
Author(s): Bicao Li, Shu Hu, Zhoufeng Liu, Zhuhong Shao, Chunlei Li, Huang Min, Jie Huang
Software Mentions: 1
Published: almost 6 years ago

10.3389/fpls.2017.01502

Different Preclimacteric Events in Apple Cultivars with Modified Ripening Physiology
Cited by: 7
Author(s): Vikram Singh, Asya Weksler, Haya Friedman
Software Mentions: 1
Published: over 7 years ago

10.1186/1297-9686-42-12

Estimating genetic diversity across the neutral genome with the use of dense marker maps
Cited by: 9
Author(s): K.A. Engelsma, M.P.L. Calus, P. Bijma, J.J. Windig
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2105-6-S4-S20

Systematic analysis of human kinase genes: a large number of genes and alternative splicing events result in functional and structural diversity
Cited by: 66
Author(s): Luciano Milanesi, Mauro Petrillo, Leandra Sepe, Angelo Boccia, Nunzio D’Agostino, Myriam Passamano, Salvatore Di Nardo, Gianluca Tasco, Rita Casadio, Giovanni Paolella
Software Mentions: 1
Published: about 19 years ago

10.1117/1.JBO.25.8.085002

Efficient inversion strategies for estimating optical properties with Monte Carlo radiative transport models
Cited by: 4
Author(s): Callum M. Macdonald, Simon R. Arridge, Samuel Powell
Software Mentions: 1
Published: over 4 years ago

10.3390/ijerph17072215

Doctor’s Preference in Providing Medical Service for Patients in the Medical Alliance: A Pilot Discrete Choice Experiment
Cited by: 0
Author(s): Richard Huan Xu, Ling-Ming Zhou, Yong Li, Dong Wang
Software Mentions: 1
Published: over 4 years ago

10.1186/1471-2105-9-366

ReRep: Computational detection of repetitive sequences in genome survey sequences (GSS)
Cited by: 10
Author(s): Thomas D. Otto, Leonardo Henrique Ferreira Gomes, Marcelo Alves-Ferreira, Antônio Basílio de Miranda, Wim Degrave
Software Mentions: 1
Published: over 16 years ago

10.1186/1472-6769-10-6

Chemical-genetic profile analysis of five inhibitory compounds in yeast
Cited by: 51
Author(s): Alamgir, Veronika Erukova, Matthew Jessulat, Ali Azizi, Ashkan Golshani
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2105-8-180

A new advance in alternative splicing databases: from catalogue to detailed analysis of regulation of expression and function of human alternative splicing variants
Cited by: 68
Author(s): Pierre de la Grange, Martin Dutertre, Margot Corréa, Didier Auboeuf
Software Mentions: 1
Published: over 17 years ago

10.1186/1471-2164-14-664

Bolbase: a comprehensive genomics database for Brassica oleracea
Cited by: 97
Author(s): Jingyin Yu, Meixia Zhao, Xiaowu Wang, Chaobo Tong, Shunmou Huang, Sadia Tehrim, Yumei Liu, Wei Hua, Liu S
Software Mentions: 1
Published: about 11 years ago

10.1186/1471-2105-7-430

Development of an open source laboratory information management system for 2-D gel electrophoresis-based proteomics workflow
Cited by: 12
Author(s): Hiraku Morisawa, Mikako Hirota, Tosifusa Toda
Software Mentions: 1
Published: about 18 years ago

10.1007/s11948-015-9697-2

Reversible Experiments: Putting Geological Disposal to the Test
Cited by: 5
Author(s): Jan Peter Bergen
Software Mentions: 1
Published: over 9 years ago

10.3390/s140815525

Efficient Sensor Placement Optimization Using Gradient Descent and Probabilistic Coverage
Cited by: 33
Author(s): Vahab Akbarzadeh, Julien-Charles Lévesque, Christian Gagné, Marc Parizeau
Software Mentions: 1
Published: over 10 years ago

10.1186/1751-0473-9-7

BLASTPLOT: a PERL module to plot next generation sequencing NCBI-BLAST results
Cited by: 5
Author(s): J. Enrique Herrera-Galeano, K. G. Frey, Regina Z. Cer, Alfred Mateczun, Kimberly A. Bishop‐Lilly, Vishwesh Mokashi
Software Mentions: 1
Published: over 10 years ago

10.3390/s19020324

Wireless Fingerprinting Uncertainty Prediction Based on Machine Learning
Cited by: 31
Author(s): You Li, Зонгшенг Гао, Zhe He, Yuan Zhuang, Ahmed Radi, Ruizhi Chen, Naser El‐Sheimy
Software Mentions: 1
Published: almost 6 years ago

10.1186/1471-2105-9-378

SQUAT: A web tool to mine human, murine and avian SAGE data
Cited by: 14
Author(s): Johan Leyritz, Stéphane Schicklin, Sylvain Blachon, Céline Keime, Céline Robardet, Jean-François Boulicaut, J. Besson, Ruggero G. Pensa, Olivier Gandrillon
Software Mentions: 1
Published: over 16 years ago

Projects: cran: GD

Papers Mentioning GD 55