cran: gdata | Projects | Ecosyste.ms: Papers

10.3390/microorganisms7110547

Linking Soil Fungal Generality to Tree Richness in Young Subtropical Chinese Forests
Cited by: 9
Author(s): Christina Weißbecker, Anna Heintz‐Buschart, Helge Bruelheide, François Buscot, Tesfaye Wubet
Software Mentions: 19
Published: about 5 years ago

10.1038/s41598-020-75345-6

High gene flow maintains genetic diversity following selection for high EPSPS copy number in the weed kochia (Amaranthaceae)
Cited by: 9
Author(s): Sara L. Martin, Leshawn Benedict, Wei Wei, Connie A. Sauder, Hugh J. Beckie, Linda M. Hall
Software Mentions: 17
Published: about 4 years ago

10.3389/fvets.2020.00068

Near Real-Time Monitoring of Clinical Events Detected in Swine Herds in Northeastern Spain
Cited by: 3
Author(s): Ana Alba-Casals, Eduard Allue, Vicens Tarancón, Jordi Baliellas, Elena Novell, Sebastián Napp, Lorenzo Fraile
Software Mentions: 16
Published: almost 5 years ago

10.7554/eLife.21883

Layer-specific chromatin accessibility landscapes reveal regulatory networks in adult mouse visual cortex
Cited by: 72
Author(s): Lucas T. Gray, Zizhen Yao, Thuc Nghi Nguyen, Tae Kyung Kim, Hongkui Zeng, Bosiljka Tasic
Software Mentions: 16
Published: almost 8 years ago

10.1093/molbev/msab006

Compatibility of Evolutionary Responses to Constituent Antibiotics Drive Resistance Evolution to Drug Pairs
Cited by: 14
Author(s): Leonie Johanna Jahn, Daniel Simon, Mia Jensen, Charles B. Bradshaw, Mostafa Mostafa Hashim Ellabaan, Morten Otto Alexander Sommer
Software Mentions: 16
Published: almost 4 years ago

10.1038/s41597-019-0344-7

A global database for metacommunity ecology, integrating species, traits, environment and space
Cited by: 21
Author(s): Aliénor Jeliazkov, Darko Mijatovic, Stéphane Chantepie, Nigel R. Andrew, Raphaël Arlettaz, Luc Barbaro, Nadia Barsoum, Alena Sucháčková Bartoňová, Elena Belskaya, Núria Bonada, Anik Brind’Amour, Rodrigo Assis de Carvalho, Helena Castro, Damian Chmura, Philippe Choler, Karen M. Chong‐Seng, Daniel F. R. Cleary, A. Cormont, William K. Cornwell, Ramiro de Campos, Nicole J. de Voogd, Sylvain Dolédec, Joshua Adam Drew, Frank Dziock, Anthony S. Eallonardo, Melanie J. Edgar, Fábio Z. Farneda, Domingo Flores Hernández, Cédric Frenette‐Dussault, Guillaume Fried, Belinda Gallardo, Heloise Gibb, Thiago Gonçalves‐Souza, Janet Higuti, Jean‐Yves Humbert, Boris R. Krasnov, Eric Le Saux, Zoë Lindo, Adrià López‐Baucells, E. Cronin Lowe, Bryndís Marteinsdóttir, Koenraad Martens, Peter J. Meffert, Andrés Mellado‐Díaz, Myles H. M. Menz, Christoph F. J. Meyer, Julia Ramos-Miranda, David Mouillot, Alessandro Ossola, Robin J. Pakeman, Sandrine Pavoine, Burak K. Pekin, Joan Pino, Arnaud Pocheville, Francesco Pomati, Peter Poschlod, Honor C. Prentice, Oliver Purschke, Valérie Raevel, Triin Reitalu, Willem Renema, Ignacio Ribera, Natalie Robinson, Bjorn J. M. Robroek, Ricardo Rocha, Sen-Her Shieh, Rebecca Spake, Monika Staniaszek‐Kik, Michał Stanko, Francisco Leonardo Tejerina‐Garro, Cajo J. F. ter Braak, Mark C. Urban, Roel van Klink, Sébastien Villéger, R.J.M. Wegman, Martin J. Westgate, Jonas Wolff, Jan Żarnowiec, М. П. Золотарев, Jonathan M. Chase
Software Mentions: 16
Published: almost 5 years ago

10.1371/journal.pone.0091650

rAvis: An R-Package for Downloading Information Stored in Proyecto AVIS, a Citizen Science Bird Project
Cited by: 6
Author(s): Sara Varela, Javier González-Hernández, Eduardo Casabella, Rafael Barrientos
Software Mentions: 15
Published: almost 11 years ago

10.1038/s41598-019-46510-3

Differential prognostic impact of platelet-derived growth factor receptor expression in NSCLC
Cited by: 19
Author(s): Thomas K. Kilvaer, Mehrdad Rakaee, Turid Hellevik, Jørg Vik, Luigi De Petris, Tom Dønnem, Carina Strell, Arne Östman, Lill-Tove Busund, Iñigo Martínez-Zubiaurre
Software Mentions: 15
Published: over 5 years ago

10.1371/journal.pone.0178783

Pharmacokinetics of caspofungin acetate to guide optimal dosing in cats
Cited by: 8
Author(s): Jana Leshinsky, Andrew J. McLachlan, David J. R. Foster, Ross Norris, Vanessa R. Barrs
Software Mentions: 13
Published: over 7 years ago

10.7717/peerj.9850

lcc: an R package to estimate the concordance correlation, Pearson correlation and accuracy over time
Cited by: 5
Author(s): Thiago Pires Oliveira, Rafael de Andrade Moral, Sílvio Sandoval Zocchi, Clarice Garcia Borges Demétrio, John Hinde
Software Mentions: 12
Published: over 4 years ago

10.12688/f1000research.9501.2

A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor
Cited by: 693
Author(s): Aaron T. L. Lun, Davis J. McCarthy, John C. Marioni
Software Mentions: 12
Published: about 8 years ago

10.1038/s41416-019-0519-1

Stroma-normalised vessel density predicts benefit from adjuvant fluorouracil-based chemotherapy in patients with stage II/III colon cancer
Cited by: 5
Author(s): Artur Mezheyeuski, Ina Hrynchyk, Mercedes Herrera, Mia Karlberg, Erik Osterman, Peter Ragnhammar, David Edler, Anna Portyanko, Fredrik Pontén, Tobias Sjöblom, Bengt Glimelius, Arne Östman
Software Mentions: 12
Published: over 5 years ago

10.1186/1471-2105-7-509

CoXpress: differential co-expression in gene expression data
Cited by: 149
Author(s): Michael Watson
Software Mentions: 11
Published: about 18 years ago

10.1371/journal.pone.0245127

Adaptation and validation of a German version of the Strengths Use and Deficit Correction (SUDCO) questionnaire
Cited by: 2
Author(s): Timo Lorenz, Kathrin Heinitz, Clemens Beer, Marianne van Woerkom
Software Mentions: 11
Published: almost 4 years ago

10.1371/journal.pone.0216611

Combined effects of nutritional, biochemical and environmental stimuli on growth performance and fatty acid composition of gilthead sea bream (Sparus aurata)
Cited by: 3
Author(s): Claudia Torno, Stefanie Staats, Anna Fickler, Sonia de Pascual‐Teresa, M.S. Izquierdo, Gerald Rimbach, Carsten Schulz
Software Mentions: 10
Published: over 5 years ago

10.3389/fmicb.2021.679671

Measurement of Volatile Compounds for Real-Time Analysis of Soil Microbial Metabolic Response to Simulated Snowmelt
Cited by: 4
Author(s): Junhyeong Kim, A. H. Goldstein, Romy Chakraborty, Kolby Jardine, Robert J. Weber, P. Sørensen, Wang Shi, Boris Faybishenko, Pawel K. Misztal, Eoin L. Brodie
Software Mentions: 10
Published: over 3 years ago

10.3390/md16100379

Fatty Acid Composition and Fatty Acid Associated Gene-Expression in Gilthead Sea Bream (Sparus aurata) are Affected by Low-Fish Oil Diets, Dietary Resveratrol, and Holding Temperature
Cited by: 18
Author(s): Claudia Torno, Stefanie Staats, Stéphanie Céline Michl, Sonia de Pascual‐Teresa, Marisol Izquierdo, Gerald Rimbach, Carsten Schulz
Software Mentions: 10
Published: about 6 years ago

10.3389/fpls.2014.00078

Plasma membrane lipidâ€“protein interactions affect signaling processes in sterol-biosynthesis mutants in Arabidopsis thaliana
Cited by: 24
Author(s): Henrik Zauber, Asdrúbal Burgos, Prashanth Garapati, Waltraud X. Schulze
Software Mentions: 9
Published: almost 11 years ago

10.3390/v12111240

TBEV Subtyping in Terms of Genetic Distance
Cited by: 19
Author(s): Andrei A. Deviatkin, Galina G. Karganova, Yulia A. Vakulenko
Software Mentions: 8
Published: about 4 years ago

10.1186/s40425-018-0326-x

Measuring multiple parameters of CD8+ tumor-infiltrating lymphocytes in human cancers by image analysis
Cited by: 67
Author(s): Keith Steele, Tze Heng Tan, R Korn, Karma Dacosta, Charles O. Brown, Michael Kuziora, Johannes Zimmermann, Brian Laffin, Moritz Widmaier, Lorenz Rognoni, Rubén Cárdenes, Katrin Schneider, Anmarie Boutrin, Philip Martin, Jiping Zha, Tobias Wiestler
Software Mentions: 7
Published: almost 7 years ago

10.1371/journal.pone.0210197

Screening dietary biochanin A, daidzein, equol and genistein for their potential to increase DHA biosynthesis in rainbow trout (Oncorhynchus mykiss)
Cited by: 6
Author(s): Anna Fickler, Stefanie Staats, Gerald Rimbach, Carsten Schulz
Software Mentions: 7
Published: almost 6 years ago

10.1371/journal.pone.0070260

Assessing Uncertainty in High-Resolution Spatial Climate Data across the US Northeast
Cited by: 29
Author(s): Daniel A. Bishop, Colin M. Beier
Software Mentions: 7
Published: over 11 years ago

10.3390/md15080252

Fatty Acid Profile Is Modulated by Dietary Resveratrol in Rainbow Trout (Oncorhynchus mykiss)
Cited by: 23
Author(s): Claudia Torno, Stefanie Staats, Sonia de Pascual‐Teresa, Gerald Rimbach, Carsten Schulz
Software Mentions: 7
Published: over 7 years ago

10.4209/aaqr.2020.02.0069

Three Years of High Time-resolution Air Pollution Monitoring in the Complex Multi-source Harbor of New York and New Jersey
Cited by: 4
Author(s): Gayle Hagler, Dan Birkett, Ronald C. Henry, Richard E. Peltier
Software Mentions: 7
Published: almost 4 years ago

10.1186/s12967-017-1195-7

Her2 assessment using quantitative reverse transcriptase polymerase chain reaction reliably identifies Her2 overexpression without amplification in breast cancer cases
Cited by: 13
Author(s): Gabriele Zoppoli, Anna Garuti, Gabriella Cirmena, Ludovica Verdun di Cantogno, C. Botta, M. Gallo, Domenico Ferraioli, Enrico Carminati, Paola Baccini, Monica Curto, Piero Fregatti, Edoardo Isnaldi, Michela Lia, Roberto Murialdo, Daniele Friedman, Anna Sapino, Alberto Ballestrero
Software Mentions: 7
Published: over 7 years ago

10.1038/s41598-021-96967-4

Parasites and diet as main drivers of the Malagasy gut microbiome richness and function
Cited by: 3
Author(s): Stanislas Mondot, Philippe Poirier, Ahmed Abou-Bacar, Valentin Greigert, Julie Brunet, Céline Nourrisson, Milijaona Randrianarivelojosia, Jean-Louis Razafindrakoto, Eugène Morel, Rivo Rakotomalala, Marion Leclerc, Karine Le Roux, Céline Monot, Patricia Lepage, Ermanno Candolfi
Software Mentions: 7
Published: over 3 years ago

10.1371/journal.pone.0183149

Low validity of Google Trends for behavioral forecasting of national suicide rates
Cited by: 76
Author(s): Ulrich S. Tran, Rita Andel, Thomas Niederkrotenthaler, Benedikt Till, Vladeta Ajdacic-Gross, Martin Voracek
Software Mentions: 6
Published: over 7 years ago

10.1186/s12864-019-5933-5

Uncovering the molecular signature underlying the light intensity-dependent root development in Arabidopsis thaliana
Cited by: 13
Author(s): Sony Kumari, Sneha Yadav, Debadutta Patra, Sharmila Singh, Ananda K. Sarkar, Kishore C. S. Panigrahi
Software Mentions: 6
Published: over 5 years ago

10.3390/bs10120194

Anxiety-Related Attention Bias in Four- to Eight-Year-Olds: An Eye-Tracking Study
Cited by: 4
Author(s): Suzannah Stuijfzand, Bobby Stuijfzand, Shirley Reynolds, Helen F. Dodd
Software Mentions: 6
Published: about 4 years ago

10.3934/publichealth.2021034

On the relationship between COVID-19 reported fatalities early in the pandemic and national socio-economic status predating the pandemic
Cited by: 2
Author(s): Kathleen L. Foster, Alessandro Selvitella
Software Mentions: 6
Published: almost 4 years ago

10.1371/journal.pone.0103256

Low-Intensity Agricultural Landscapes in Transylvania Support High Butterfly Diversity: Implications for Conservation
Cited by: 69
Author(s): Jacqueline Loos, Ine Dorresteijn, Jan Hanspach, Pascal Fust, László Rákosy, Joern Fischer
Software Mentions: 6
Published: over 10 years ago

10.1186/s13058-019-1158-4

Machine learning techniques for personalized breast cancer risk prediction: comparison with the BCRAT and BOADICEA models
Cited by: 68
Author(s): Chang Ming, Valeria Viassolo, Nicole Probst‐Hensch, Pierre O. Chappuis, Ivo D. Dinov, Maria C. Katapodi
Software Mentions: 5
Published: over 5 years ago

10.1186/s12870-019-1714-1

A combination of approaches evidenced seed storage behaviour in the miracle berry Synsepalum dulcificum (Schumach. et Thonn.) Daniell
Cited by: 6
Author(s): Dèdéou Apocalypse Tchokponhoué, Sognigbé N’Danikou, Enoch G. Achigan‐Dako
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0065267

Zinc Finger Nuclease Mediated Knockout of ADP-Dependent Glucokinase in Cancer Cell Lines: Effects on Cell Survival and Mitochondrial Oxidative Metabolism
Cited by: 14
Author(s): Susan Richter, Shona Morrison, Timothy Connor, Jiechuang Su, Cristin G. Print, Ron S. Ronimus, Sean L. McGee, William R. Wilson
Software Mentions: 5
Published: over 11 years ago

10.1038/s41598-017-00641-7

SNPs in bone-related miRNAs are associated with the osteoporotic phenotype
Cited by: 16
Author(s): Laura De-Ugarte, Enrique Caro-Molina, Maria Rodríguez-Sanz, Miguel A. García‐Pérez, José M. Olmos, Manuel Sosa-Henríquez, Ramón Pérez‐Cano, Carlos Gómez‐Alonso, Luís Del Río, J. Mateo-Agudo, José Antonio Blázquez-Cabrera, Jesús González-Macı́as, Javier del Pino‐Montes, Manuel Muñoz‐Torres, Manuel Dı́az Curiel, Jorge Malouf, Antonio Cano, José Luis Pérez‐Castrillón, Xavier Nogués, Natalia Garcia‐Giralt, Adolfo Díez-Pérez
Software Mentions: 5
Published: over 7 years ago

10.1186/s12863-015-0179-y

ALDsuite: Dense marker MALD using principal components of ancestral linkage disequilibrium
Cited by: 3
Author(s): Randall C. Johnson, George W. Nelson, Jean‐François Zagury, Cheryl A. Winkler
Software Mentions: 5
Published: almost 10 years ago

10.7554/eLife.20937

Enforcement of developmental lineage specificity by transcription factor Oct1
Cited by: 14
Author(s): Zuolian Shen, Jinsuk Kang, Arvind Shakya, Marcin Tabaka, Elke A. Jarboe, Aviv Regev, Dean Tantin
Software Mentions: 5
Published: over 7 years ago

10.1038/s41416-020-0937-0

Machine learning-based lifetime breast cancer risk reclassification compared with the BOADICEA model: impact on screening recommendations
Cited by: 27
Author(s): Chang Ming, Valeria Viassolo, Nicole Probst‐Hensch, Ivo D. Dinov, Pierre O. Chappuis, Maria C. Katapodi
Software Mentions: 4
Published: over 4 years ago

10.1038/s41598-020-75259-3

Decrease in social cohesion in a colonial seabird under a perturbation regime
Cited by: 6
Author(s): Meritxell Genovart, Olivier Giménez, Albert Bertolero, Rémi Choquet, Daniel Oró, Roger Pradel
Software Mentions: 4
Published: about 4 years ago

10.1016/j.dib.2016.08.043

Simulated data and code for analysis of herpetofauna response to forest management in the Missouri Ozarks
Cited by: 1
Author(s): Christopher T. Rota, Alexander J. Wolf, Rochelle B. Renken, Robert A. Gitzen, Debby K. Fantz, Robert A. Montgomery, Matthew G. Olson, Larry D. Vangilder, Joshua J. Millspaugh
Software Mentions: 4
Published: about 8 years ago

10.3390/metabo9030044

Ageing Investigation Using Two-Time-Point Metabolomics Data from KORA and CARLA Studies
Cited by: 38
Author(s): Choiwai Maggie Chak, María Elena Lacruz, Jonathan Adam, Stefan Brandmaier, M Covic, Jialing Huang, Christa Meisinger, Daniel Tiller, Cornelia Prehn, Jerzy Adamski, Ursula Berger, Christian Gieger, Annette Peters, Alexander Kluttig, Rui Wang-Sattler
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-019-51673-0

Comparative analysis of obesity-related cardiometabolic and renal biomarkers in human plasma and serum
Cited by: 15
Author(s): Meenu Rohini Rajan, Matúš Soták, Fredrik Barrenäs, Tong Shen, Kamil Borkowski, Nicholas J. Ashton, Christina Biörserud, Tomas Lindahl, Sofia Ramström, Michael Schöll, Per Lindahl, Oliver Fiehn, John W. Newman, Rosie Perkins, Ville Wallenius, Stephan Lange, Emma Börgeson
Software Mentions: 3
Published: about 5 years ago

10.1093/jxb/erw003

Leaf Length Tracker: a novel approach to analyse leaf elongation close to the thermal limit of growth in the field
Cited by: 29
Author(s): Sebastian Nagelmüller, Norbert Kirchgeßner, Steven Yates, Maya Hiltpold, Achim Walter
Software Mentions: 3
Published: almost 9 years ago

10.1371/journal.pone.0167756

Impact of Reclassification on Thyroid Nodules with Architectural Atypia: From Non-Invasive Encapsulated Follicular Variant Papillary Thyroid Carcinomas to Non-Invasive Follicular Thyroid Neoplasm with Papillary-Like Nuclear Features
Cited by: 20
Author(s): Min Ji Jeon, Dong Eun Song, Chan Kwon Jung, Won Gu Kim, Hyemi Kwon, Yu‐Mi Lee, Tae‐Yon Sung, Jong Ho Yoon, Ki-Wook Chung, Suck Joon Hong, Jung Hwan Baek, Jeong Hyun Lee, Tae Yong Kim, Young Kee Shong
Software Mentions: 3
Published: about 8 years ago

10.1371/journal.pone.0051136

Meta-Analysis of Gene Expression Signatures Defining the Epithelial to Mesenchymal Transition during Cancer Progression
Cited by: 140
Author(s): Christian Gröger, Markus Grubinger, Thomas Waldhör, Klemens Vierlinger, Wolfgang Mikulits
Software Mentions: 3
Published: about 12 years ago

10.1289/ehp.1002180

Endocrine Profiling and Prioritization of Environmental Chemicals Using ToxCast Data
Cited by: 273
Author(s): David M. Reif, Matthew T. Martin, Shirlee Tan, Keith A. Houck, Richard S. Judson, Ann M. Richard, Thomas B. Knudsen, David J. Dix, Robert J. Kavlock
Software Mentions: 2
Published: about 14 years ago

Projects: cran: gdata

Papers Mentioning gdata 47