Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.12688/f1000research.9501.2

https://doi.org/10.12688/f1000research.9501.2

Cited by: 693
Author(s): Aaron T. L. Lun, Davis J. McCarthy, John C. Marioni
Published: over 7 years ago

Software Mentions 12

bioconductor: edgeR

Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568

bioconductor: limma

Linear Models for Microarray Data
Papers that mentioned: 7,776

bioconductor: MAST

Model-based Analysis of Single Cell Transcriptomics
Papers that mentioned: 668

bioconductor: scater

Single-Cell Analysis Toolkit for Gene Expression Data in R
Papers that mentioned: 79

bioconductor: scran

Methods for Single-Cell RNA-Seq Data Analysis
Papers that mentioned: 113

bioconductor: SummarizedExperiment

SummarizedExperiment container
Papers that mentioned: 52

cran: gdata

Various R Programming Tools for Data Manipulation
Papers that mentioned: 47

cran: Julia

Fractal Image Data Generator
Papers that mentioned: 304

pypi: excel

This package name is reserved by Microsoft Corporation
Papers that mentioned: 2,995

pypi: gdata

Python client library for Google data APIs
Papers that mentioned: 47

pypi: MAST

MAterials Simulation Toolkit
Papers that mentioned: 668

pypi: perl

Perl as a Python package
Papers that mentioned: 604