Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.12688/f1000research.9501.2

https://doi.org/10.12688/f1000research.9501.2

A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor

Cited by: 693
Author(s): Aaron T. L. Lun, Davis J. McCarthy, John C. Marioni
Published: about 8 years ago

Software Mentions 12

bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: MAST
Model-based Analysis of Single Cell Transcriptomics
Papers that mentioned: 668
bioconductor: scater
Single-Cell Analysis Toolkit for Gene Expression Data in R
Papers that mentioned: 79
bioconductor: scran
Methods for Single-Cell RNA-Seq Data Analysis
Papers that mentioned: 113
bioconductor: SummarizedExperiment
SummarizedExperiment container
Papers that mentioned: 52
cran: gdata
Various R Programming Tools for Data Manipulation
Papers that mentioned: 47
cran: Julia
Fractal Image Data Generator
Papers that mentioned: 304
pypi: excel
This package name is reserved by Microsoft Corporation
Papers that mentioned: 2,995
pypi: gdata
Python client library for Google data APIs
Papers that mentioned: 47
pypi: MAST
MAterials Simulation Toolkit
Papers that mentioned: 668
pypi: perl
Perl as a Python package
Papers that mentioned: 604