Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: Publish
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/Publish
Format Output of Various Routines in a Suitable Way for Reports
and Publication
8 versions
Latest release: almost 2 years ago
2 dependent packages
6,723 downloads last month
Papers Mentioning Publish 53
10.1098/rspb.2021.0616
Juvenile ecology drives adult morphology in two insect ordersCited by: 4
Author(s): Peter T. Rühr, Thomas van de Kamp, Tomáš Faragó, Jörg U. Hammel, Fabian Wilde, Elena Borisova, Carina Edel, Melina Frenzel, Tilo Baumbach, Alexander Blanke
Software Mentions: 11
Published: over 3 years ago
10.1002/ece3.6941
A priori estimation of sequencing effort in complex microbial metatranscriptomesCited by: 2
Author(s): Toni Monleón-Getino, Jorge Frias-Lopez
Software Mentions: 8
Published: about 4 years ago
10.1186/s12889-017-4590-3
Smoking-related general and cause-specific mortality in EstoniaCited by: 15
Author(s): Gea Kõks, Krista Fischer, Sulev Kõks
Software Mentions: 5
Published: over 7 years ago
10.1002/ece3.6806
Consequences of multiple imputation of missing standard deviations and sample sizes in meta‐analysisCited by: 21
Author(s): Stephan Kambach, Helge Bruelheide, Katharina Gerstner, Jessica Gurevitch, Michael Beckmann, Ralf Seppelt
Software Mentions: 5
Published: about 4 years ago
10.1371/journal.pone.0165815
The Impact of Tree Diversity on Different Aspects of Insect Herbivory along a Global Temperature Gradient - A Meta-AnalysisCited by: 40
Author(s): Stephan Kambach, Ingolf Kühn, Bastien Castagneyrol, Helge Bruelheide
Software Mentions: 5
Published: almost 8 years ago
10.1007/s00251-019-01137-6
The Immune Epitope Database and Analysis Resource Program 2003–2018: reflections and outlookCited by: 37
Author(s): Sheridan Martini, Morten Nielsen, Bjoern Peters, Alessandro Sette
Software Mentions: 4
Published: almost 5 years ago
10.1007/s00330-019-06167-y
Application of a deep learning algorithm for detection and visualization of hip fractures on plain pelvic radiographsCited by: 164
Author(s): Chi‐Tung Cheng, Tsung-Ying Ho, Tao-Yi Lee, Ching-Fang Chang, Ching-Cheng Chou, Chih-Chi Chen, I‐Fang Chung, Chien‐Hung Liao
Software Mentions: 4
Published: over 5 years ago
10.1186/s12998-021-00374-5
Chiropractic case reports: a review and bibliometric analysisCited by: 19
Author(s): Robert J. Trager, Jeffery A. Dusek
Software Mentions: 3
Published: over 3 years ago
10.1038/s42003-020-01204-9
The archives are half-empty: an assessment of the availability of microbial community sequencing dataCited by: 20
Author(s): Stephanie D. Jurburg, Maximilian Konzack, Nico Eisenhauer, Anna Heintz‐Buschart
Software Mentions: 3
Published: about 4 years ago
10.1371/journal.pone.0242474
Exploring options for reprocessing of N95 Filtering Facepiece Respirators (N95-FFRs) amidst COVID-19 pandemic: A systematic reviewCited by: 19
Author(s): Diptanu Paul, Ayush Gupta, Anand Kumar Maurya
Software Mentions: 3
Published: almost 4 years ago
10.1186/s40813-020-0144-7
Status and gaps of research on respiratory disease pathogens of swine in AfricaCited by: 9
Author(s): Peter Oba, Barbara Wieland, Frank Norbert Mwiine, Joseph Erume, Elin Gertzell, Magdalena Jacobson, Michel M. Dione
Software Mentions: 2
Published: over 4 years ago
10.1186/s13750-020-00197-6
What is the research evidence for antibiotic resistance exposure and transmission to humans from the environment? A systematic map protocolCited by: 27
Author(s): Isobel Stanton, Alison Bethel, Anne Frances Clare Leonard, William H. Gaze, Ruth Garside
Software Mentions: 2
Published: over 4 years ago
10.4317/jced.53427
Oral mucosal lesions in a Chilean elderly population: A retrospective study with a systematic review from thirteen countriesCited by: 14
Author(s): César Rivera, Daniel Droguett, María Jesús Arenas-Márquez
Software Mentions: 2
Published: almost 8 years ago
10.1371/journal.pone.0253129
Is the open access citation advantage real? A systematic review of the citation of open access and subscription-based articlesCited by: 49
Author(s): Allison Langham-Putrow, Caitlin Bakker, Amy Riegelman
Software Mentions: 2
Published: over 3 years ago
10.25100/cm.v43i4.3789
The uncertainty of colombian scientific journals with PublindexCited by: 2
Author(s): Mauricio Palacios
Software Mentions: 2
Published: about 7 years ago
10.1371/journal.pntd.0008731
What are the implications of Zika Virus for infant feeding? A synthesis of qualitative evidence concerning Congenital Zika Syndrome (CZS) and comparable conditionsCited by: 5
Author(s): Christopher Carroll, Andrew Booth, Fiona Campbell, Clare Relton
Software Mentions: 2
Published: about 4 years ago
10.1371/journal.pone.0002778
Measuring Co-Authorship and Networking-Adjusted Scientific ImpactCited by: 61
Author(s): John P. A. Ioannidis
Software Mentions: 2
Published: over 16 years ago
10.1038/s41597-021-00888-w
A global occurrence database of the Atlantic blue crab Callinectes sapidusCited by: 33
Author(s): Giorgio Mancinelli, Roberta Bardelli, Argyro Zenetos
Software Mentions: 2
Published: over 3 years ago
10.12688/f1000research.15429.2
The Congress Impact Factor: A proposal from board members of the World Society of Emergency Surgeons.it (WSES) and Academy of Emergency Medicine and Care (AcEMC)Cited by: 1
Author(s): Belinda De Simone, Luca Ansaloni, Micheal D. Kelly, Federico Coccolini, Massimo Sartelli, Salomone Di Saverio, Michele Pisano, Gianfranco Cervellin, Gian Luca Baiocchi, Fausto Catena
Software Mentions: 1
Published: about 6 years ago
10.3389/fcell.2021.652061
Which Hyperglycemic Model of Zebrafish (Danio rerio) Suites My Type 2 Diabetes Mellitus Research? A Scoring System for Available MethodsCited by: 17
Author(s): Aria Salehpour, Mohammad Rezaei, Arezoo Khoradmehr, Yaser Tahamtani, Amin Tamadon
Software Mentions: 1
Published: over 3 years ago
10.3389/fnhum.2014.00879
Top-Cited Articles in Traumatic Brain InjuryCited by: 29
Author(s): Bhanu Sharma, David Wyndham Lawrence
Software Mentions: 1
Published: about 10 years ago
10.3389/fmolb.2021.742596
Electromagnetic Field as a Treatment for Cerebral Ischemic StrokeCited by: 14
Author(s): Amanda Gomez, Lena Pérez Font, Bert Brône, Annelies Bronckaers
Software Mentions: 1
Published: about 3 years ago
10.3389/fnins.2017.00120
The Changing Landscape of Neuroscience Research, 2006–2015: A Bibliometric StudyCited by: 94
Author(s): Andy Wai Kan Yeung, Tazuko K. Goto, W. Keung Leung
Software Mentions: 1
Published: over 7 years ago
10.3389/frma.2020.591090
“Then and Now,” Mapping the 25 Year Evolution and Impact of North American Vascular Biology Organization Science Through Publications of its Founding and Current MembersCited by: 0
Author(s): Zorina S. Galis, Bruce Herr, Santoshmurti S. Daptardar, Medina Sydykanova, Katy Börner
Software Mentions: 1
Published: almost 4 years ago
10.3389/frma.2021.696470
Bibliometric Reports for Institutions: Best Practices in a Responsible Metrics ScenarioCited by: 8
Author(s): Álvaro Cabezas-Clavijo, Daniel Torres‐Salinas
Software Mentions: 1
Published: over 3 years ago
10.1186/s13002-020-00422-z
Cultural keystone species revisited: are we asking the right questions?Cited by: 17
Author(s): Michael A. Coe, Orou G. Gaoue
Software Mentions: 1
Published: almost 4 years ago
10.1007/s11192-016-2150-8
Professional and citizen bibliometrics: complementarities and ambivalences in the development and use of indicators—a state-of-the-art reportCited by: 99
Author(s): Loet Leydesdorff, Paul Wouters, Lutz Bornmann
Software Mentions: 1
Published: about 8 years ago
10.1186/s40064-016-2934-6
Research performance of AACSB accredited institutions in Taiwan: before versus after accreditationCited by: 17
Author(s): Shih Wen Ke, Wei Lin, Chih‐Fong Tsai
Software Mentions: 1
Published: over 8 years ago
10.1186/s13643-016-0215-7
Comparing the coverage, recall, and precision of searches for 120 systematic reviews in Embase, MEDLINE, and Google Scholar: a prospective studyCited by: 97
Author(s): Wichor M. Bramer, Dean Giustini, Bianca Kramer
Software Mentions: 1
Published: over 8 years ago
10.1186/s13643-016-0343-0
Reviewing the research methods literature: principles and strategies illustrated by a systematic overview of sampling in qualitative researchCited by: 56
Author(s): Stephen J. Gentles, Cathy Charles, David Nicholas, Jenny Ploeg, K. Ann McKibbon
Software Mentions: 1
Published: about 8 years ago
10.4274/tao.2020.6093
Non-Traumatic Laryngeal Fractures: A Systematic ReviewCited by: 1
Author(s): Noor Khalid, Muhammad Bilal, Muhammad Umer
Software Mentions: 1
Published: over 3 years ago
10.1186/s13620-019-0147-3
Schmallenberg virus: a systematic international literature review (2011-2019) from an Irish perspectiveCited by: 21
Author(s): Áine B. Collins, Michael L. Doherty, Damien Barrett, John F. Mee
Software Mentions: 1
Published: about 5 years ago
10.3390/ijerph18147567
A Bibliometric Analysis of Human-Machine Interaction Methodology for Electric-Powered Wheelchairs Driving from 1998 to 2020Cited by: 5
Author(s): Xiaochen Zhang, Lanxin Hui, Linchao Wei, Fuchuan Song, Fei Hu
Software Mentions: 1
Published: over 3 years ago
10.1186/s13023-021-01813-5
Guidelines on the diagnosis, clinical assessments, treatment and management for CLN2 disease patientsCited by: 12
Author(s): Sara Mole, Angela Schulz, Ëben Badoe, Samuel F. Berkovic, Emily C. de los Reyes, Simon Dulz, Paul Gissen, Norberto Guelbert, Charles Marques Lourenço, Heather Mason, Jonathan W. Mink, Noreen Murphy, Miriam Nickel, Joffre Olaya, Maurizio Scarpa, Ingrid E. Scheffer, Alessandro Simonati, Nicola Specchio, Ina von Löbbecke, Raymond Wang, Ruth Williams
Software Mentions: 1
Published: over 3 years ago
10.1186/s12885-017-3687-5
Exercise and cancer-related fatigue in adults: a systematic review of previous systematic reviews with meta-analysesCited by: 55
Author(s): George A. Kelley, Kristi S. Kelley
Software Mentions: 1
Published: about 7 years ago
10.3390/nu12020332
Carrot Intake and Risk of Colorectal Cancer: A Prospective Cohort Study of 57,053 DanesCited by: 17
Author(s): Ulrik Deding, Gunnar Baatrup, Lars Porskjær Christensen, Morten Kobæk-Larsen
Software Mentions: 1
Published: almost 5 years ago
10.1136/bmjopen-2021-050043
Rapid realist review of the role of community pharmacy in the public health response to COVID-19Cited by: 33
Author(s): Ian Maidment, Emma Young, Maura MacPhee, Andrew Booth, Hadar Zaman, Juanita Breen, Andrea Hilton, Tony Kelly, Geoff Wong
Software Mentions: 1
Published: over 3 years ago
10.1186/1475-2875-11-362
The Malaria in Pregnancy Library: a bibliometric reviewCited by: 24
Author(s): Anna Maria van Eijk, Jenny Hill, Sue Povall, Alison Reynolds, Helen Wong, Feiko O. ter Kuile
Software Mentions: 1
Published: about 12 years ago
10.4317/medoral.21665
Oral diseases: a 14-year experience of a Chilean institution with a systematic review from eight countriesCited by: 4
Author(s): César Rivera, Carolina Jones-Herrera, Pablo Agustı́n Vargas, Bernardo Venegas, Daniel Droguett
Software Mentions: 1
Published: almost 8 years ago
10.3390/v13020306
African Swine Fever Virus Circulation between Tanzania and Neighboring Countries: A Systematic Review and Meta-AnalysisCited by: 17
Author(s): J.N. Hakizimana, Clara M. Yona, Olivier Kamana, Hans Nauwynck, Gerald Misinzo
Software Mentions: 1
Published: over 3 years ago
10.1007/s00508-020-01625-w
A critical examination of the main premises of Traditional Chinese MedicineCited by: 25
Author(s): Michael Eigenschink, Lukas Dearing, Tom Eric Dablander, Julian Maier, Harald H. Sitte
Software Mentions: 1
Published: over 4 years ago
10.1007/s00345-020-03133-y
Early recovery after surgery for radical cystectomy: comprehensive assessment and meta-analysis of existing protocolsCited by: 35
Author(s): Frederik Wessels, Maximilian Lenhart, Karl‐Friedrich Kowalewski, Volker Braun, Tom Terboven, Florian Roghmann, Maurice Stephan Michel, Patrick Honeck, Maximilian C. Kriegmair
Software Mentions: 1
Published: over 4 years ago
10.3897/zookeys.150.2164
Studying the effects of virtual biodiversity research infrastructuresCited by: 0
Author(s): Daphné Duin, Peter van den Besselaar
Software Mentions: 1
Published: almost 13 years ago
10.12669/pjms.343.15633
Author’s failure to read and follow instructions leads to increased trauma to their manuscriptsCited by: 7
Author(s): Shaukat Ali Jawaid, Masood Jawaid
Software Mentions: 1
Published: over 6 years ago
10.11604/pamj.2021.38.60.21004
Bibliometric profile of the African Academy of Sciences medical and health sciences fellowsCited by: 0
Author(s): Joseph A. Balogun, Efe Mamuzo, Friday Okonofua, Adetutu O. Balogun, Adetoyeje Y. Oyeyemi
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pone.0161281
The Impact of a Researcher’s Structural Position on Scientific Performance: An Empirical AnalysisCited by: 23
Author(s): Damien Contandriopoulos, Arnaud Duhoux, Catherine Larouche, Mélanie Perroux
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pone.0012133
A Method for the Automated, Reliable Retrieval of Publication-Citation RecordsCited by: 8
Author(s): Derek Ruths, Faiyaz Al Zamal
Software Mentions: 1
Published: about 14 years ago
10.1371/journal.pone.0129181
Meditative Movement Therapies and Health-Related Quality-of-Life in Adults: A Systematic Review of Meta-AnalysesCited by: 89
Author(s): George A. Kelley, Kristi S. Kelley
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0113271
Fragmented Romanian Sociology: Growth and Structure of the Collaboration NetworkCited by: 14
Author(s): Marian-Gabriel Hâncean, Matjaž Perc, Lazăr Vlăsceanu
Software Mentions: 1
Published: almost 10 years ago
10.1371/journal.pone.0207337
The influence of gender ratios on academic careers: Combining social networks with tokenismCited by: 3
Author(s): Constantin Schoen, Katja Rost, David Seidl
Software Mentions: 1
Published: almost 6 years ago
10.1186/1752-153X-7-132
On the use of the h-index in evaluating chemical researchCited by: 20
Author(s): Rosaria Ciriminna, Mario Pagliaro
Software Mentions: 1
Published: over 11 years ago
10.4103/1742-6413.44572
CytoJournal′s move to the new platform: More on financial model to the support open-access charter in cytopathology, publication quality indicators, and other issuesCited by: 1
Author(s): Vinod B. Shidham, Martha B. Pitman, Richard M. DeMay, Barbara Atkinson
Software Mentions: 1
Published: almost 17 years ago
10.12688/f1000research.7070.1
A citation-based, author- and age-normalized, logarithmic index for evaluation of individual researchers independently of publication countsCited by: 28
Author(s): Aleksey V Belikov, В. В. Беликов
Software Mentions: 1
Published: about 9 years ago