cran: ggtern | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0187758

Habitat- and soil-related drivers of the root-associated fungal community of Quercus suber in the Northern Moroccan forest
Cited by: 20
Author(s): Fatima Zahra Maghnia, Younes Abbas, Frédéric Mahe, Benaissa Kerdouh, Estelle Tournier, Mohamed Ouadji, Pierre Tisseyre, Yves Prin, Naïma El Ghachtouli, Salah Eddine Bakkali Yakhlef, Robin Duponnois, Hervé Sanguin
Software Mentions: 8
Published: about 7 years ago

10.1371/journal.pone.0250629

Epiphytic diatom community structure and richness is determined by macroalgal host and location in the South Shetland Islands (Antarctica)
Cited by: 3
Author(s): Andrea M. Burfeid-Castellanos, Rafael P. Martín–Martín, Michael Kloster, Carlos Angulo‐Preckler, Conxita Àvila, Bánk Beszteri
Software Mentions: 8
Published: over 3 years ago

10.1186/s40168-021-01078-x

An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastrointestinal microbiome of ruminants
Cited by: 85
Author(s): Fei Xie, Wei Jin, Huazhe Si, Yuan Yuan, Ye Tao, Junhua Liu, Xiaoxu Wang, Chengjian Yang, Qiushuang Li, Xiu-Tian Yan, Limei Lin, Qian Jiang, Lei Zhang, Chang Guo, Chris Greening, Rasmus Heller, Le Luo Guan, Phillip B. Pope, Zhiliang Tan, Weiyun Zhu, Min Wang, Qiang Qiu, Zhipeng Li, Shengyong Mao
Software Mentions: 8
Published: over 3 years ago

10.3389/fmicb.2021.640386

The Molecular Information About Deadwood Bacteriomes Partly Depends on the Targeted Environmental DNA
Cited by: 9
Author(s): Maraike Probst, Judith Ascher‐Jenull, Heribert Insam, María Gómez-Brandòn
Software Mentions: 6
Published: over 3 years ago

10.3389/fmicb.2017.01563

Role of Age-Related Shifts in Rumen Bacteria and Methanogens in Methane Production in Cattle
Cited by: 28
Author(s): Chong Liu, Qinghui Meng, Yongxing Chen, Mengsi Xu, Min Shen, Rui Gao, Shangquan Gan
Software Mentions: 6
Published: over 7 years ago

10.1186/s40168-018-0526-0

Soil microbiomes with distinct assemblies through vertical soil profiles drive the cycling of multiple nutrients in reforested ecosystems
Cited by: 299
Author(s): Shuo Jiao, Weimin Chen, Jieli Wang, Nini Du, Qiaoping Li, Gehong Wei
Software Mentions: 6
Published: over 6 years ago

10.1128/mSystems.00087-17

Tree Leaf Bacterial Community Structure and Diversity Differ along a Gradient of Urban Intensity
Cited by: 43
Author(s): Isabelle Laforest‐Lapointe, Christian Messier, Steven W. Kembel
Software Mentions: 5
Published: almost 7 years ago

10.7717/peerj.8317

Alteration of the gut microbiota associated with childhood obesity by 16S rRNA gene sequencing
Cited by: 65
Author(s): Xiaowei Chen, Haixiang Sun, Fei Jiang, Yan Shen, Xin Li, HU Xue-ju, Xiao-Min Shen, Pingmin Wei
Software Mentions: 5
Published: almost 5 years ago

10.1038/s41598-021-80990-6

Metagenomics analysis of bacteriophages and antimicrobial resistance from global urban sewage
Cited by: 24
Author(s): Josephine E. S. Strange, Pimlapas Leekitcharoenphon, Frederik Duus Møller, Frank Møller Aarestrup
Software Mentions: 5
Published: almost 4 years ago

10.1186/s40168-021-01056-3

Anna Karenina and the subgingival microbiome associated with periodontitis
Cited by: 15
Author(s): Khaled Altabtbaei, Pooja Maney, Sukirth M. Ganesan, Shareef M Dabdoub, Haikady N. Nagaraja, Purnima Kumar
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0257564

Tree species identity and composition shape the epiphytic lichen community of structurally simple boreal forests over vast areas
Cited by: 7
Author(s): Julian Klein, Matthew Low, Göran Thor, Jörgen Sjögren, Eva Lindberg, Sönke Eggers
Software Mentions: 5
Published: over 3 years ago

10.3390/microorganisms9020455

Impact of Marine Aquaculture on the Microbiome Associated with Nearby Holobionts: The Case of Patella caerulea Living in Proximity of Sea Bream Aquaculture Cages
Cited by: 9
Author(s): Giorgia Palladino, Simone Rampelli, Daniel Scicchitano, Margherita Musella, Grazia Marina Quero, Fiorella Prada, Arianna Mancuso, Anne Mette Seyfarth, Silvia Turroni, Marco Candela, Elena Biagi
Software Mentions: 5
Published: almost 4 years ago

10.1371/journal.pone.0256867

Longitudinal association between movement behaviours and depressive symptoms among adolescents using compositional data analysis
Cited by: 10
Author(s): Hugues Sampasa‐Kanyinga, Ian Colman, Dorothea Dumuid, Ian Janssen, Gary S. Goldfield, Jianli Wang, Karen A. Patte, Scott T. Leatherdale, Jean‐Philippe Chaput
Software Mentions: 5
Published: over 3 years ago

10.3390/ijerph13111091

Arsenic and Heavy Metal Contamination in Soils under Different Land Use in an Estuary in Northern Vietnam
Cited by: 31
Author(s): Thinh Nguyen Van, Akinori Ozaki, Hoang Nguyen Tho, Anh Nguyen Duc, Yen Tran Thi, Kiyoshi Kurosawa
Software Mentions: 5
Published: about 8 years ago

10.1038/s41422-018-0128-1

A programmed wave of uridylation-primed mRNA degradation is essential for meiotic progression and mammalian spermatogenesis
Cited by: 46
Author(s): Marcos Morgan, Yuka Kabayama, Christian Much, Ivayla Ivanova, Monica Di Giacomo, Tatsiana Auchynnikava, Jack Monahan, Dimitrios Vitsios, Lina Vasiliauskaitė, Stefano Comazzetto, Juri Rappsilber, Robin C. Allshire, Bo T. Porse, Anton J. Enright, Dónal O’Carroll
Software Mentions: 5
Published: almost 6 years ago

10.18632/aging.103227

MiR-1908/EXO1 and MiR-203a/FOS, regulated by scd1, are associated with fracture risk and bone health in postmenopausal diabetic women
Cited by: 27
Author(s): Yisheng Chen, Xueran Kang, Zun-Qiang Zhou, Yang Jiang, Xin Qi, Chenting Ying, Yunpeng Zhang, Jie Tao
Software Mentions: 4
Published: over 4 years ago

10.3389/fmicb.2017.02379

Responses of Microbial Community Composition to Temperature Gradient and Carbon Steel Corrosion in Production Water of Petroleum Reservoir
Cited by: 35
Author(s): Xiaoxiao Li, Tao Yang, Serge Maurice Mbadinga, Jinfeng Liu, Shi‐Zhong Yang, Ji‐Dong Gu, Bo‐Zhong Mu
Software Mentions: 4
Published: about 7 years ago

10.1038/s41598-020-80413-y

Preference, performance, and chemical defense in an endangered butterfly using novel and ancestral host plants
Cited by: 5
Author(s): Nathan L. Haan, M. Deane Bowers, Jonathan D. Bakker
Software Mentions: 4
Published: almost 4 years ago

10.1038/s41598-019-51118-8

Extensive vegetation browning and drying in forests of India’s Tiger Reserves
Cited by: 7
Author(s): Pradeep Koulgi, Nicholas Clinton, Krithi K. Karanth
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-019-43169-8

Zooarchaeology of the social and economic upheavals in the Late Antique-Early Islamic sequence of the Negev Desert
Cited by: 23
Author(s): Nimrod Marom, Meirav Meiri, Yotam Tepper, Tali Erickson-Gini, Hagar Reshef, Lior Weissbrod, Guy Bar-Oz
Software Mentions: 4
Published: over 5 years ago

10.1098/rstb.2015.0040

Loss of neurogenesis in<i>Hydra</i>leads to compensatory regulation of neurogenic and neurotransmission genes in epithelial cells
Cited by: 42
Author(s): Yvan Wenger, Wanda Christa Buzgariu, Brigitte Galliot
Software Mentions: 4
Published: almost 9 years ago

10.1186/s12870-021-03058-7

Reduced free asparagine in wheat grain resulting from a natural deletion of TaASN-B2: investigating and exploiting diversity in the asparagine synthetase gene family to improve wheat quality
Cited by: 10
Author(s): Joseph Oddy, Rocío Alarcón‐Reverte, Mark Wilkinson, Karl Ravet, Sarah Raffan, Andrea Minter, Andrew Mead, J. Stephen Elmore, Isabel Moreira de Almeida, Nicholas C. Cryer, Nigel G. Halford, Stephen Pearce
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-021-89637-y

Impact of diesel and biodiesel contamination on soil microbial community activity and structure
Cited by: 21
Author(s): Eduardo K. Mitter, James J. Germida, J. R. de Freitas
Software Mentions: 4
Published: over 3 years ago

10.3390/nu13020426

Composition of Dietary Fatty Acids and Health Risks in Japanese Youths
Cited by: 1
Author(s): Masayuki Okuda, Aya Fujiwara, Satoshi Sasaki
Software Mentions: 3
Published: almost 4 years ago

10.1186/s12915-019-0730-9

Joint learning improves protein abundance prediction in cancers
Cited by: 12
Author(s): Hongyang Li, Omer Siddiqui, Hongjiu Zhang
Software Mentions: 3
Published: about 5 years ago

10.1186/s40168-020-00972-0

Identification of microbial signatures linked to oilseed rape yield decline at the landscape scale
Cited by: 21
Author(s): Sally Hilton, Emma Picot, Susanne Schreiter, David Bass, Keith Norman, Anna Oliver, Jonathan D. Moore, Tim H. Mauchline, Peter R. Mills, Graham R. Teakle, Ian M. Clark, P. R. Hirsch, Christopher J. van der Gast, Gary D. Bending
Software Mentions: 3
Published: almost 4 years ago

10.1111/1755-0998.12674

Graphics for relatedness research
Cited by: 6
Author(s): Iván Galván-Femenía, Jan Graffelman, Carles Barceló-i-Vidal
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pbio.3000830

Strigolactone signaling regulates specialized metabolism in tobacco stems and interactions with stem-feeding herbivores
Cited by: 16
Author(s): Suhua Li, Youngsung Joo, Dechang Cao, Ran Li, Gisuk Lee, Rayko Halitschke, Gundega Baldwin, Ian T. Baldwin, Ming Wang
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0235225

Nitrogen enrichment stimulates wetland plant responses whereas salt amendments alter sediment microbial communities and biogeochemical responses
Cited by: 3
Author(s): Mary M. Donato, Olivia Johnson, Blaire Steven, Beth A. Lawrence
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0244682

Metabarcoding on both environmental DNA and RNA highlights differences between fungal communities sampled in different habitats
Cited by: 12
Author(s): Martino Adamo, Samuele Voyron, Matteo Chialva, Roland Marmeisse, Mariangela Girlanda
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0188441

Transcriptome-wide analysis of the Trypanosoma cruzi proliferative cycle identifies the periodically expressed mRNAs and their multiple levels of control
Cited by: 15
Author(s): Santiago Solís Chávez, Guillermo Eastman, Pablo Smircich, Lorena Becco, Carolina Oliveira-Rizzo, Rafael Sebastián Fort, Mariana Potenza, Beatríz Garat, José Sotelo‐Silveira, Marı́a Ana Duhagon
Software Mentions: 3
Published: about 7 years ago

10.3389/fmicb.2020.00968

Pea (Pisum sativum l.) Plant Shapes Its Rhizosphere Microbiome for Nutrient Uptake and Stress Amelioration in Acidic Soils of the North-East Region of India
Cited by: 20
Author(s): Diptaraj Chaudhari, Krishnappa Rangappa, Anup Das, Jayanta Layek, S. Basavaraj, B.K. Kandpal, Yogesh S. Shouche, Praveen Rahi
Software Mentions: 3
Published: over 4 years ago

10.3389/fmicb.2018.02240

The Rootstock Regulates Microbiome Diversity in Root and Rhizosphere Compartments of Vitis vinifera Cultivar Lambrusco
Cited by: 33
Author(s): Federica D’Amico, Marco Candela, Silvia Turroni, Elena Biagi, Patrizia Brigidi, Alessia Bega, Davide Vancini, Simone Rampelli
Software Mentions: 3
Published: about 6 years ago

10.3389/fmicb.2018.01110

The Human Virome Protein Cluster Database (HVPC): A Human Viral Metagenomic Database for Diversity and Function Annotation
Cited by: 18
Author(s): Ali H. A. Elbehery, Judith Feichtmayer, Dave Singh, Christian Griebler, Li Deng
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2018.01402

Cholecystectomy Damages Aging-Associated Intestinal Microbiota Construction
Cited by: 47
Author(s): Wenxue Wang, Junfeng Wang, Julan Li, Peng Yan, Jimmy Yun, Ruyi Zhang, Wei Yue, Qiang Guo, Jiawei Geng
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-021-93722-7

Shifts in ecological strategy spectra of typical forest vegetation types across four climatic zones
Cited by: 9
Author(s): Xin Han, Jihong Huang, Runguo Zang
Software Mentions: 3
Published: over 3 years ago

10.3390/ijms22147401

Analysis of Immune Associated Co-Expression Networks Reveals Immune-Related Long Non-Coding RNAs during MI in the Presence and Absence of HDC
Cited by: 2
Author(s): Zhiwei Zhang, Saidan Ding, Xiangdong Yang, Junbo Ge
Software Mentions: 3
Published: over 3 years ago

10.1002/ece3.3018

The most common diet results in low reproduction in a generalist seabird
Cited by: 37
Author(s): Susanne van Donk, Kees Camphuysen, Judy Shamoun‐Baranes, Jaap van der Meer
Software Mentions: 2
Published: over 7 years ago

10.3389/fnut.2019.00194

A Novel Method to Visualize the Dietary Macronutrient Composition of Smaller Visceral Fat Accumulation
Cited by: 6
Author(s): Tohru Yamaguchi, Naoki Ozato, Mitsuhiro Katashima, Kaori Sawada, Yoshihisa Katsuragi, Kazushige Ihara, Shigeyuki Nakaji
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmicb.2017.00849

Bacterial Root Microbiome of Plants Growing in Oil Sands Reclamation Covers
Cited by: 75
Author(s): Eduardo K. Mitter, J. R. de Freitas, James J. Germida
Software Mentions: 2
Published: over 7 years ago

10.1126/sciadv.aau9253

Most sleep does not serve a vital function: Evidence from <i>Drosophila melanogaster</i>
Cited by: 47
Author(s): Quentin Geissmann, Esteban J. Beckwith, Giorgio F. Gilestro
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.ppat.1008557

Natural variation of Arabidopsis thaliana responses to Cauliflower mosaic virus infection upon water deficit
Cited by: 12
Author(s): Sandy E Bergès, François Vasseur, Alexis Bédiée, Gaëlle Rolland, Diane Masclef, Myriam Dauzat, Manuella van Munster, Denis Vile
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0253970

Depth-dependent influence of biochar application on the abundance and community structure of diazotrophic under sugarcane growth
Cited by: 12
Author(s): Nyumah Fallah, Ziqi Yang, Muhammad Tayyab, Caifang Zhang, Ahmad Yusuf Abubakar, Zhongxu Lin, Ziqin Pang, Americ Allison, Hua Zhang
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-019-54328-2

Transgenerational role of seed mycobiome – an endosymbiotic fungal composition as a prerequisite to stress resilience and adaptive phenotypes in Triticum
Cited by: 20
Author(s): Vladimir Vujanovic, M. Nazrul Islam, Prasad Daida
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-91138-x

Structural and optical properties of amorphous Si–Ge–Te thin films prepared by combinatorial sputtering
Cited by: 8
Author(s): Claudia Mihai, F. Sava, Iosif‐Daniel Şimăndan, A.C. Gâlcă, I. Burducea, Nicu Becherescu, A. Velea
Software Mentions: 1
Published: over 3 years ago

10.2196/26393

Measuring the Interactions Between Health Demand, Informatics Supply, and Technological Applications in Digital Medical Innovation for China: Content Mapping and Analysis
Cited by: 0
Author(s): Jian Du, Ting Chen, Luxia Zhang
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0215973

A geochemical characterization of lead ores in China: An isotope database for provenancing archaeological materials
Cited by: 50
Author(s): Yiu‐Kang Hsu, Benjamin Sabatini
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-70528-7

Cross-talk between airway and gut microbiome links to IgE responses to house dust mites in childhood airway allergies
Cited by: 18
Author(s): Chih‐Yung Chiu, Yi-Ling Chan, Ming‐Han Tsai, Chia‐Jung Wang, Meng-Han Chiang, Chun-Che Chiu, Shih‐Chi Su
Software Mentions: 1
Published: over 4 years ago

Projects: cran: ggtern

Papers Mentioning ggtern 48