Papers: 10.1186/s40168-021-01078-x

https://doi.org/10.1186/s40168-021-01078-x

An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastrointestinal microbiome of ruminants

Cited by: 85
Author(s): Fei Xie, Wei Jin, Huazhe Si, Yuan Yuan, Ye Tao, Junhua Liu, Xiaoxu Wang, Chengjian Yang, Qiushuang Li, Xiu-Tian Yan, Limei Lin, Qian Jiang, Lei Zhang, Chang Guo, Chris Greening, Rasmus Heller, Le Luo Guan, Phillip B. Pope, Zhiliang Tan, Weiyun Zhu, Min Wang, Qiang Qiu, Zhipeng Li, Shengyong Mao
Published: over 5 years ago

Software Mentions 8

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
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cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
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Performance Attribution for Equity Portfolios
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cran: UpSetR
A More Scalable Alternative to Venn and Euler Diagrams for Visualizing Intersecting Sets
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pypi: GenomeTreeTk
A toolbox for working with genome trees.
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pypi: pa
Paper Arxiv: A command line based academic paper management tool.
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pypi: PhyloPhlAn
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
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