Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s40168-021-01078-x

https://doi.org/10.1186/s40168-021-01078-x

An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastrointestinal microbiome of ruminants

Cited by: 85
Author(s): Fei Xie, Wei Jin, Huazhe Si, Yuan Yuan, Ye Tao, Junhua Liu, Xiaoxu Wang, Chengjian Yang, Qiushuang Li, Xiu-Tian Yan, Limei Lin, Qian Jiang, Lei Zhang, Chang Guo, Chris Greening, Rasmus Heller, Le Luo Guan, Phillip B. Pope, Zhiliang Tan, Weiyun Zhu, Min Wang, Qiang Qiu, Zhipeng Li, Shengyong Mao
Published: over 3 years ago

Software Mentions 8

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: ggtern
An Extension to 'ggplot2', for the Creation of Ternary Diagrams
Papers that mentioned: 48
cran: pa
Performance Attribution for Equity Portfolios
Papers that mentioned: 10
cran: UpSetR
A More Scalable Alternative to Venn and Euler Diagrams for Visualizing Intersecting Sets
Papers that mentioned: 319
pypi: GenomeTreeTk
A toolbox for working with genome trees.
Papers that mentioned: 3
pypi: pa
Paper Arxiv: A command line based academic paper management tool.
Papers that mentioned: 10
pypi: PhyloPhlAn
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
Papers that mentioned: 144