Ecosyste.ms: Papers

10.1111/1755-0998.13220

High‐contiguity genome assembly of the chemosynthetic gammaproteobacterial endosymbiont of the cold seep tubeworm <i>Lamellibrachia barhami</i>
Cited by: 6
Author(s): Corinna Breusing, Darrin T. Schultz, Sebastian Sudek, Alexandra Z. Worden, Charles W. Young
Software Mentions: 11
Published: over 4 years ago

10.1371/journal.pone.0151959

Physiological Limits along an Elevational Gradient in a Radiation of Montane Ground Beetles
Cited by: 28
Author(s): R. O. Slatyer, Sean D. Schoville
Software Mentions: 11
Published: over 8 years ago

10.1038/s41437-019-0204-4

Extreme mito-nuclear discordance in a peninsular lizard: the role of drift, selection, and climate
Cited by: 24
Author(s): Pedro Henrique Bernardo, Santiago Sánchez‐Ramírez, Santiago J. Sánchez-Pacheco, Sergio Ticul Álvarez-Castañeda, Eduardo Felipe Aguilera-Miller, Fausto R. Méndez–de la Cruz, Robert W. Murphy
Software Mentions: 10
Published: over 5 years ago

10.1038/s41598-019-42310-x

Mitogenomics of historical type specimens of Australasian turtles: clarification of taxonomic confusion and old mitochondrial introgression
Cited by: 19
Author(s): Christian Kehlmaier, Xiuwen Zhang, Arthur Georges, Patrick D. Campbell, Scott Thomson, Uwe Fritz
Software Mentions: 9
Published: over 5 years ago

10.1002/ece3.5033

Evidence for contemporary and historical gene flow between guppy populations in different watersheds, with a test for associations with adaptive traits
Cited by: 18
Author(s): Léa Blondel, Lyndsey Baillie, Jessica Quinton, Jahson Berhane Alemu, Ian G. Paterson, Andrew P. Hendry, Paul Bentzen
Software Mentions: 8
Published: over 5 years ago

10.1002/ece3.5597

Population structure, connectivity, and demographic history of an apex marine predator, the bull shark<i>Carcharhinus leucas</i>
Cited by: 16
Author(s): Agathe Pirog, Virginie Ravigné, Michaël C. Fontaine, Adrien Rieux, Aude Gilabert, Geremy Cliff, Éric Clua, Ryan Daly, Michael R. Heithaus, Jérémy J. Kiszka, Philip Matich, John Nevill, Amy F. Smoothey, Andrew J. Temple, Per Berggren, Sébastien Jaquemet, Hélène Magalon
Software Mentions: 8
Published: about 5 years ago

10.1371/journal.pone.0231744

Combining genetic and demographic monitoring better informs conservation of an endangered urban snake
Cited by: 11
Author(s): Dustin A. Wood, Jonathan P. Rose, Brian J. Halstead, Ricka E. Stoelting, Karen E. Swaim, Amy G. Vandergast
Software Mentions: 8
Published: over 4 years ago

10.1038/s41598-018-33326-w

Spotlight on islands: on the origin and diversification of an ancient lineage of the Italian wall lizard Podarcis siculus in the western Pontine Islands
Cited by: 11
Author(s): Gabriele Senczuk, Katja Havenstein, Valentina Milana, Chiara Ripa, Emanuela De Simone, Ralph Tiedemann, Riccardo Castiglia
Software Mentions: 7
Published: about 6 years ago

10.1371/journal.pone.0153108

Integrative Taxonomy of Southeast Asian Snail-Eating Turtles (Geoemydidae: Malayemys) Reveals a New Species and Mitochondrial Introgression
Cited by: 22
Author(s): Flora Ihlow, Melita Vamberger, Morris Flecks, Timo Hartmann, Michael Cota, Sunchai Makchai, Pratheep Meewattana, J. E. Dawson, Long Kheng, Dennis Rödder, Uwe Fritz
Software Mentions: 7
Published: over 8 years ago

10.1111/mec.14932

Flower‐visitor communities of an arcto‐alpine plant—Global patterns in species richness, phylogenetic diversity and ecological functioning
Cited by: 13
Author(s): Mikko Tiusanen, Tea Huotari, Paul D. N. Hebert, Tommi Andersson, Ashley L. Asmus, Joël Bêty, Emma Davis, Jennifer Gale, Bess Hardwick, David S. Hik, Christian Körner, Richard B. Lanctot, Maarten J. J. E. Loonen, Rauni Partanen, Karissa Reischke, Sarah T. Saalfeld, Fanny Senez‐Gagnon, Paul A. Smith, Ján Šulavík, Ilkka Syvänperä, Christine Urbanowicz, Siân Williams, Paul Woodard, Yulia Zaika, Tomas Roslin
Software Mentions: 7
Published: almost 6 years ago

10.1002/ece3.5111

Genetic population structure and demography of an apex predator, the tiger shark<i>Galeocerdo cuvier</i>
Cited by: 21
Author(s): Agathe Pirog, Sébastien Jaquemet, Virginie Ravigné, Geremy Cliff, Éric Clua, Bonnie J. Holmes, Nigel E. Hussey, John Nevill, Andrew J. Temple, Per Berggren, Laurent Vigliola, Hélène Magalon
Software Mentions: 7
Published: over 5 years ago

10.1002/ece3.3261

Evolutionarily significant units of the critically endangered leaf frog<i>Pithecopus ayeaye</i>(Anura, Phyllomedusidae) are not effectively preserved by the Brazilian protected areas network
Cited by: 16
Author(s): Rafael Félix de Magalhães, Priscila Lemes, Arley Camargo, Ubirajara Oliveira, Reuber Albuquerque Brandão, Hans Thomassen, Paulo Christiano de Anchieta Garcia, Felipe Sá Fortes Leite, Fabrício R. Santos
Software Mentions: 7
Published: about 7 years ago

10.1038/s41598-017-02157-6

Molecular phylogenetics and biogeography of the mint tribe Elsholtzieae (Nepetoideae, Lamiaceae), with an emphasis on its diversification in East Asia
Cited by: 22
Author(s): Pan Li, Zhe-Chen Qi, Luxian Liu, Tetsuo Ohi‐Toma, Dong Kun Lee, Tsung‐Hsin Hsieh, Chengxin Fu, Kenneth M. Cameron, Ying‐Xiong Qiu
Software Mentions: 7
Published: over 7 years ago

10.1111/mec.13112

Contrasting population genetic structure among freshwater‐resident and anadromous lampreys: the role of demographic history, differential dispersal and anthropogenic barriers to movement
Cited by: 52
Author(s): Fiona S. A. Bracken, A. Rus Hoelzel, John B. Hume, Martyn C. Lucas
Software Mentions: 6
Published: over 9 years ago

10.1111/j.1365-294X.2010.04961.x

Hybridization and restricted gene flow between native and introduced stocks of Alpine whitefish (Coregonus sp.) across multiple environments
Cited by: 44
Author(s): Kathrin A. Winkler, Barbara Pamminger-Lahnsteiner, Josef Wanzenböck, Steven Weiss
Software Mentions: 6
Published: almost 14 years ago

10.1111/eva.12484

Severe consequences of habitat fragmentation on genetic diversity of an endangered Australian freshwater fish: A call for assisted gene flow
Cited by: 106
Author(s): Alexandra Pavlova, Luciano B. Beheregaray, Rhys A. Coleman, Dean M. Gilligan, Katherine A. Harrisson, Brett A. Ingram, Joanne Kearns, Annika M. Lamb, Mark Lintermans, Jarod Lyon, Thuy Thi Thu Nguyen, Minami Sasaki, Zeb Tonkin, Jian D. L. Yen, Paul Sunnucks
Software Mentions: 6
Published: over 7 years ago

10.1111/irv.12772

Comparative epidemiology, phylogenetics, and transmission patterns of severe influenza A/H3N2 in Australia from 2003 to 2017
Cited by: 1
Author(s): Jing Xia, Dillon C. Adam, Aye Moa, Abrar Ahmad Chughtai, Ian G. Barr, Naomi Komadina, C. Raina MacIntyre
Software Mentions: 5
Published: over 4 years ago

10.1111/j.1420-9101.2010.01971.x

Habitat use affects morphological diversification in dragon lizards
Cited by: 78
Author(s): David C. Collar, James A. Schulte, Brian C. O’Meara, Jonathan B. Losos
Software Mentions: 5
Published: over 14 years ago

10.1186/s12862-016-0636-x

Evolution of East Asia’s Arcto-Tertiary relict Euptelea (Eupteleaceae) shaped by Late Neogene vicariance and Quaternary climate change
Cited by: 60
Author(s): Yanan Cao, Hans Peter Comes, Shota Sakaguchi, Luyao Chen, Ying‐Xiong Qiu
Software Mentions: 5
Published: over 8 years ago

10.1111/eva.12495

Speciation history of a species complex of<i>Primulina eburnea</i>(Gesneriaceae) from limestone karsts of southern China, a biodiversity hot spot
Cited by: 23
Author(s): Jing Wang, Bin Ai, Hanghui Kong, Ming Kang
Software Mentions: 5
Published: over 7 years ago

10.1111/mec.13247

High levels of interspecific gene flow in an endemic cichlid fish adaptive radiation from an extreme lake environment
Cited by: 53
Author(s): Antonia G. P. Ford, Kanchon K. Dasmahapatra, Lukas Rüber, Karim Gharbi, Timothée Cézard, Julia J. Day
Software Mentions: 5
Published: over 9 years ago

10.1371/journal.pone.0151075

Macro-Climatic Distribution Limits Show Both Niche Expansion and Niche Specialization among C4 Panicoids
Cited by: 8
Author(s): Lone Aagesen, Fernando Biganzoli, María Julia Bena, Ana C. Godoy-Bürki, Renata Reinheimer, Fernando O. Zuloaga
Software Mentions: 5
Published: over 8 years ago

10.3389/fnana.2020.585793

Neuronize v2: Bridging the Gap Between Existing Proprietary Tools to Optimize Neuroscientific Workflows
Cited by: 4
Author(s): Iván Velasco, Pablo Toharia, Ruth Benavides-Piccione, Isabel Fernaud-Espinosa, Juan P. Brito, Susana Mata, Javier DeFelipe, Luis Pastor, Sofía Bayona
Software Mentions: 4
Published: about 4 years ago

10.1111/mec.12462

Divergent evolutionary processes associated with colonization of offshore islands
Cited by: 88
Author(s): Natália Martínková, Ross Barnett, Thomas Cucchi, Rahel Struchen, M. Pascal, Michel Pascal, Martin C. Fischer, Thomas Higham, Selina Brace, Simon Y. W. Ho, Jean‐Pierre Quéré, Paul O’Higgins, Laurent Excoffier, Gerald Heckel, A. Rus Hoelzel, Keith Dobney, Jeremy B. Searle
Software Mentions: 4
Published: about 11 years ago

10.1111/1755-0998.12361

One species in eight: <scp>DNA</scp> barcodes from type specimens resolve a taxonomic quagmire
Cited by: 51
Author(s): Marko Mutanen, Mari Kekkonen, Sean W. J. Prosser, Paul D. N. Hebert, Lauri Kaila
Software Mentions: 4
Published: almost 10 years ago

10.1002/ece3.4487

Evolutionary history of the endemic water shrew<i>Neomys anomalus</i>: Recurrent phylogeographic patterns in semi-aquatic mammals of the Iberian Peninsula
Cited by: 9
Author(s): Marina Querejeta, José Castresana
Software Mentions: 4
Published: about 6 years ago

10.1002/ece3.576

Reevaluation of a classic phylogeographic barrier: new techniques reveal the influence of microgeographic climate variation on population divergence
Cited by: 15
Author(s): J. Angel Soto‐Centeno, Lisa N. Barrow, Julie M. Allen, David L. Reed
Software Mentions: 4
Published: over 11 years ago

10.1002/ece3.3161

Cryptic lineage divergence in marine environments: genetic differentiation at multiple spatial and temporal scales in the widespread intertidal goby<i>Gobiosoma bosc</i>
Cited by: 23
Author(s): Borja Milá, James L. Van Tassell, Jatziri A. Calderón, Lukas Rüber, Rafael Zardoya
Software Mentions: 4
Published: over 7 years ago

10.3390/genes12010044

Re-Evaluating the Internal Phylogenetic Relationships of Collembola by Means of Mitogenome Data
Cited by: 12
Author(s): Claudio Cucini, Pietro Paolo Fanciulli, Francesco Frati, Peter Convey, Francesco Nardi, Antonio Carapelli
Software Mentions: 4
Published: almost 4 years ago

10.1099/vir.0.000035

Rapid evolution of the env gene leader sequence in cats naturally infected with feline immunodeficiency virus
Cited by: 9
Author(s): Paweł M. Bęczkowski, Joseph Hughes, Roman Biek, Annette Litster, Brian J. Willett, Margaret J. Hosie
Software Mentions: 4
Published: over 9 years ago

10.1186/s12862-017-0888-0

Phylogeography of red muntjacs reveals three distinct mitochondrial lineages
Cited by: 23
Author(s): Raquel A. Martins, Jörns Fickel, Minh Đức Lê, Thanh Van Nguyen, Ha L. Nguyen, Robert J. Timmins, Han Ming Gan, Jeffrine J. Rovie-Ryan, Dorina Lenz, Daniel W. Förster, Andreas Wilting
Software Mentions: 3
Published: almost 8 years ago

10.1186/s12862-019-1397-0

Phylogeography of Bellamya (Mollusca: Gastropoda: Viviparidae) snails on different continents: contrasting patterns of diversification in China and East Africa
Cited by: 14
Author(s): Qianbiao Gu, Martin Husemann, Hao Wu, Jing Dong, Chuan J. Zhou, Xian F. Wang, Yun N. Gao, Man Zhang, Guo R. Zhu, Guo Xing Nie
Software Mentions: 3
Published: over 5 years ago

10.3390/biom11060848

Micro-Aqueous Organic System: A Neglected Model in Computational Lipase Design?
Cited by: 1
Author(s): Shang Wang, Yan Xu, Yu Xiang
Software Mentions: 3
Published: over 3 years ago

10.1111/eva.12067

Evolutionary dynamics of a rapidly receding southern range boundary in the threatened <scp>C</scp>alifornia <scp>R</scp>ed‐<scp>L</scp>egged <scp>F</scp>rog (<i><scp>R</scp>ana draytonii</i>)
Cited by: 22
Author(s): Jonathan Q. Richmond, Kelly R. Barr, Adam R. Backlin, Amy G. Vandergast, Robert N. Fisher
Software Mentions: 3
Published: over 11 years ago

10.1038/s41598-020-66252-x

Molecular evolution and genetic variations of V and W proteins derived by RNA editing in Avian Paramyxoviruses
Cited by: 9
Author(s): Pachineella Lakshmana Rao, Ravi Kumar Gandham, Madhuri Subbiah
Software Mentions: 2
Published: over 4 years ago

10.3897/CompCytogen.v14i4.59574

Karyotype and DNA barcode of Polyommatus (Agrodiaetus) cyaneus (Staudinger, 1899) from its type locality: implication for taxonomic and evolutionary research in Polyommatus blue butterflies (Lepidoptera, Lycaenidae)
Cited by: 0
Author(s): Vladimir A. Lukhtanov, Alexander V. Dantchenko, Karine V. Balayan, A. V. Gagarina
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0090624

Molecular Comparison and Evolutionary Analyses of VP1 Nucleotide Sequences of New African Human Enterovirus 71 Isolates Reveal a Wide Genetic Diversity
Cited by: 105
Author(s): Maël Bessaud, Richter Razafindratsimandresy, Antoine Nougairède, Marie-Line Joffret, Jagadish M. Deshpande, Audrey Dubot‐Pérès, Jean‐Michel Héraud, Xavier de Lamballerie, Françis Delpeyroux, Jean‐Luc Bailly
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0091836

Long-Distance Dispersal by Sea-Drifted Seeds Has Maintained the Global Distribution of Ipomoea pes-caprae subsp. brasiliensis (Convolvulaceae)
Cited by: 40
Author(s): Matin Miryeganeh, Kōji Takayama, Yohei Tateishi, Tadashi Kajita
Software Mentions: 2
Published: over 10 years ago

10.1111/j.1420-9101.2011.02243.x

Correlates of species richness in the largest Neotropical amphibian radiation
Cited by: 42
Author(s): Alejandro González-Voyer, José M. Padial, Santiago Castroviejo‐Fisher, Ignacio De la Riva, Carles Vilà
Software Mentions: 2
Published: over 13 years ago

10.1186/s12879-019-3930-6

Epidemiological and genetic characterization of pH1N1 and H3N2 influenza viruses circulated in MENA region during 2009–2017
Cited by: 22
Author(s): Hebah A. Al-Khatib, Asmaa A. Al Thani, Imed Eddine Gallouzi, Hadi M. Yassine
Software Mentions: 2
Published: over 5 years ago

10.1002/ece3.2019

The Quaternary evolutionary history, potential distribution dynamics, and conservation implications for a Qinghai–Tibet Plateau endemic herbaceous perennial,<i>Anisodus tanguticus</i>(Solanaceae)
Cited by: 31
Author(s): Dongshi Wan, Jiexiong Feng, Dechun Jiang, Kangshan Mao, Yuan‐Wen Duan, Georg Miehe, Lars Opgenoorth
Software Mentions: 2
Published: over 8 years ago

10.1002/ece3.3554

DNA barcoding of reef brittle stars (Ophiuroidea, Echinodermata) from the southwestern Indian Ocean evolutionary hot spot of biodiversity
Cited by: 28
Author(s): Émilie Boissin, Thierry B. Hoareau, Gustav Paulay, J. Henrich Bruggemann
Software Mentions: 2
Published: about 7 years ago

10.1002/ece3.2860

Postglacial recolonization shaped the genetic diversity of the winter moth ( <i>Operophtera brumata</i> ) in Europe
Cited by: 6
Author(s): Jeremy C. Andersen, Nathan P. Havill, Adalgisa Caccone, Joseph S. Elkinton
Software Mentions: 2
Published: over 7 years ago

10.3897/compcytogen.v15.i1.60347

Chromosomal and DNA barcode analysis of the Polyommatus (Agrodiaetus) damone (Eversmann, 1841) species complex (Lepidoptera, Lycaenidae)
Cited by: 0
Author(s): Vladimir A. Lukhtanov, Alexander V. Dantchenko
Software Mentions: 2
Published: almost 4 years ago

10.3389/fmicb.2021.725340

Evolution and Population Structures of Prevalent Methicillin-Resistant Staphylococcus aureus in Taiwan
Cited by: 3
Author(s): Chih‐Jung Chen, Tsai‐Ling Lauderdale, Yhu-Chering Huang
Software Mentions: 2
Published: about 3 years ago