cran: MCM | Projects | Ecosyste.ms: Papers

10.7554/eLife.62161

Human ORC/MCM density is low in active genes and correlates with replication time but does not delimit initiation zones
Cited by: 18
Author(s): Nina Kirstein, Alexander Buschle, Xia Wu, Stefan Krebs, Helmut Blum, Elisabeth Kremmer, Ina Vorberg, Wolfgang Hammerschmidt, Laurent Lacroix, Olivier Hyrien, Benjamin Audit, Aloys Schepers
Software Mentions: 7
Published: over 3 years ago

10.1371/journal.pcbi.1006042

The Pathway Coexpression Network: Revealing pathway relationships
Cited by: 40
Author(s): Yered Pita-Juárez, Gabriel Altschuler, Sokratis Kariotis, Wenbin Wei, Katjuša Koler, Claire Green, Rudolph E. Tanzi, Winston Hide
Software Mentions: 7
Published: over 6 years ago

10.1186/s12889-021-11441-0

Introducing an efficient sampling method for national surveys with limited sample sizes: application to a national study to determine quality and cost of healthcare
Cited by: 5
Author(s): Mahboubeh Parsaeian, Mahdi Mahdavi, Mojdeh Saadati, Parinaz Mehdipour, Ali Sheidaei, Shahab Khatibzadeh, Farshad Farzadfar, Saeid Shahraz
Software Mentions: 5
Published: over 3 years ago

10.3390/metabo9020022

Metabolic Modeling of Human Gut Microbiota on a Genome Scale: An Overview
Cited by: 65
Author(s): Partho Sen, Matej Orešič
Software Mentions: 5
Published: almost 6 years ago

10.7554/eLife.60833

Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules
Cited by: 9
Author(s): Patricia Giselle Cipriani, Olivia Bay, John Zinno, Michelle Gutwein, Hin Hark Gan, Vinay K. Mayya, George Chung, Jia‐Xuan Chen, Hala Fahs, Yu Guan, Thomas F. Duchaîne, Matthias Selbach, Fabio Piano, Kristin C. Gunsalus
Software Mentions: 4
Published: over 3 years ago

10.1037/xlm0000668

Dual-task costs in working memory: An adversarial collaboration.
Cited by: 37
Author(s): Jason M. Doherty, Clément Belletier, Stephen Rhodes, Agnieszka Jaroslawska, Pierre Barrouillet, Valérie Camos, Nelson Cowan, Moshe Naveh–Benjamin, Robert H. Logie
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0013984

Enrichment Map: A Network-Based Method for Gene-Set Enrichment Visualization and Interpretation
Cited by: 1,757
Author(s): Daniele Merico, Ruth Isserlin, Oliver Stueker, Andrew Emili, Gary D. Bader
Software Mentions: 3
Published: about 14 years ago

10.1371/journal.pone.0155459

Contig-Layout-Authenticator (CLA): A Combinatorial Approach to Ordering and Scaffolding of Bacterial Contigs for Comparative Genomics and Molecular Epidemiology
Cited by: 12
Author(s): Sabiha Shaik, Narender Kumar, Aditya Kumar Lankapalli, Sumeet K. Tiwari, Ramani Baddam, Niyaz Ahmed
Software Mentions: 3
Published: over 8 years ago

10.3389/fnbot.2021.641007

Prediction of Dangerous Driving Behavior Based on Vehicle Motion State and Passenger Feeling Using Cloud Model and Elman Neural Network
Cited by: 8
Author(s): Hong‐Bing Xiang, Jiafeng Zhu, Guoyuan Liang, Yingjun Shen
Software Mentions: 2
Published: over 3 years ago

10.1186/s12864-015-1467-7

Mutations and genomic islands can explain the strain dependency of sugar utilization in 21 strains of Propionibacterium freudenreichii
Cited by: 25
Author(s): Valentin Loux, Mahendra Mariadassou, Síntia Almeida, Hélène Chiapello, Amal Plaudet Hammani, Julien Buratti, Annie Gendrault, Valérie Barbe, Jean‐Marc Aury, Stéphanie-Marie Deutsch, Sandrine Parayre, Marie‐Noëlle Madec, Victoria Chuat, Gwenaël Jan, Pierre Peterlongo, Vasco Azevedo, Yves Le Loir, Hélène Falentin
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0132508

Fully Flexible Docking of Medium Sized Ligand Libraries with RosettaLigand
Cited by: 89
Author(s): Samuel DeLuca, Karen R. Khar, Jens Meiler
Software Mentions: 2
Published: over 9 years ago

10.3389/fmicb.2016.00673

Metabolic Network Modeling of Microbial Interactions in Natural and Engineered Environmental Systems
Cited by: 96
Author(s): Octavio Perez-Garcia, Gavin Lear, Naresh Singhal
Software Mentions: 2
Published: over 8 years ago

10.3390/s16122056

Minimum Interference Channel Assignment Algorithm for Multicast in a Wireless Mesh Network
Cited by: 4
Author(s): Sang‐Il Choi, Jong Hyuk Park
Software Mentions: 2
Published: almost 8 years ago

10.15252/emmm.202013076

SGK1 inhibition in glia ameliorates pathologies and symptoms in Parkinson disease animal models
Cited by: 38
Author(s): Oh-Chan Kwon, Jae J. Song, Yunseon Yang, Seong Hoon Kim, Ji Young Kim, Min Seok, Inhwa Hwang, Je-Wook Yu, Jenisha Karmacharya, Han Joo Maeng, Jiyoung Kim, Eek‐hoon Jho, Seung Yeon Ko, Hyeon Son, Mi Yoon Chang, Sang Hun Lee
Software Mentions: 2
Published: over 3 years ago

10.1186/1471-2172-12-39

Differential MHC class I expression in distinct leukocyte subsets
Cited by: 36
Author(s): Justin M. Greene, Roger W. Wiseman, Simon M. Lank, Benjamin N. Bimber, Julie A. Karl, Benjamin J. Burwitz, Jennifer J. Lhost, Oriana E. Hawkins, Kevin Kunstman, Karl W. Broman, Steven M. Wolinsky, William H. Hildebrand, David H. O’Connor
Software Mentions: 2
Published: over 13 years ago

10.1186/1471-2164-10-69

Desiccation survival in an Antarctic nematode: molecular analysis using expressed sequenced tags
Cited by: 78
Author(s): Bishwo N. Adhikari, Diana H. Wall, Byron J. Adams
Software Mentions: 2
Published: almost 16 years ago

10.5194/acp-20-7753-2020

Constraining remote oxidation capacity with ATom observations
Cited by: 31
Author(s): Katherine R. Travis, Colette L. Heald, Hannah M. Allen, E. C. Apel, S. R. Arnold, D. R. Blake, William H. Brune, Xin Chen, R. Commane, J. D. Crounse, Bruce C. Daube, G. S. Diskin, James W. Elkins, M. J. Evans, Samuel R. Hall, E. J. Hintsa, R. S. Hornbrook, P. S. Kasibhatla, Michelle Kim, Gan Luo, Kathryn McKain, Dylan B. Millet, F. L. Moore, J. Peischl, Thomas B. Ryerson, Tomás Sherwen, A. B. Thames, Kirk Ullmann, Xuan Wang, P. O. Wennberg, G. M. Wolfe, Fangqun Yu
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0002384

Allogeneic Lymphocytes Persist and Traffic in Feral MHC-Matched Mauritian Cynomolgus Macaques
Cited by: 21
Author(s): Justin M. Greene, Benjamin J. Burwitz, Alex J. Blasky, Teresa L. Mattila, Jung Joo Hong, Eva G. Rakasz, Roger W. Wiseman, Kim J. Hasenkrug, Pamela J. Skinner, Shelby L. O’Connor, David H. O’Connor
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0032376

Stochastic Modeling for the Expression of a Gene Regulated by Competing Transcription Factors
Cited by: 5
Author(s): Hsih-Te Yang, Minoru S.H. Ko
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0159791

A Review of Flood Loss Models as Basis for Harmonization and Benchmarking
Cited by: 112
Author(s): Tina Gerl, Heidi Kreibich, Guillermo Franco, David Maréchal, Kai Schröter
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0005203

Exploring Clinical Associations Using ‘-Omics’ Based Enrichment Analyses
Cited by: 48
Author(s): David A. Hanauer, Daniel R. Rhodes, Arul M. Chinnaiyan
Software Mentions: 1
Published: over 15 years ago

10.1038/s42003-021-02133-x

Integrating molecular, histopathological, neuroimaging and clinical neuroscience data with NeuroPM-box
Cited by: 13
Author(s): Yasser Iturria-Medina, Félix Carbonell, Atousa Assadi, Quadri Adewale, Ahmed Faraz Khan, Tobias R. Baumeister, Lazaro M. Sanchez-Rodriguez
Software Mentions: 1
Published: over 3 years ago

10.1155/2012/475745

A New Particle Swarm Optimization-Based Method for Phase Unwrapping of MRI Data
Cited by: 8
Author(s): Wei He, Yuanzhi Cheng, Ling Xia, Liu F
Software Mentions: 1
Published: almost 13 years ago

10.7759/cureus.6106

Comparison Between Mathematical and Software Calculation Methods for the Measurement of the Cross-sectional Area in Upper Airway Imaging
Cited by: 0
Author(s): Yousef Aljathlany, Kholoud Mohammed AlAmari, Abdullah Aljasser, Abdullah Algın, Manal Bukhari, Mohammed Almohizea, Amir Khan, Ahmed Alammar
Software Mentions: 1
Published: about 5 years ago

10.1186/s13634-016-0415-2

Introducing oriented Laplacian diffusion into a variational decomposition model
Cited by: 0
Author(s): Reza Shahidi, Cecilia Moloney
Software Mentions: 1
Published: about 8 years ago

10.1039/c7fd00025a

Detection and identification of Criegee intermediates from the ozonolysis of biogenic and anthropogenic VOCs: comparison between experimental measurements and theoretical calculations
Cited by: 12
Author(s): Chiara Giorio, Steven Campbell, Maurizio Bruschi, Alexander T. Archibald, Markus Kalberer
Software Mentions: 1
Published: almost 8 years ago

10.3389/fendo.2020.00455

Genetics of Hypertriglyceridemia
Cited by: 87
Author(s): Jacqueline S. Dron, Robert A. Hegele
Software Mentions: 1
Published: over 4 years ago

10.3389/fgene.2019.00252

Multi-Level Comparative Framework Based on Gene Pair-Wise Expression Across Three Insulin Target Tissues for Type 2 Diabetes
Cited by: 3
Author(s): Shaoyan Sun, Fengnan Sun, Yong Wang
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2021.635208

Genomic Insights Into the Pathogenicity of a Novel Biofilm-Forming Enterococcus sp. Bacteria (Enterococcus lacertideformus) Identified in Reptiles
Cited by: 5
Author(s): Jessica E Agius, David N. Phalen, Karrie Rose, John-Sebastian Eden
Software Mentions: 1
Published: over 3 years ago

10.3389/fneur.2018.00026

Perspectives on How Human Simultaneous Multi-Modal Imaging Adds Directionality to Spread Models of Alzheimer’s Disease
Cited by: 4
Author(s): Julia Neitzel, Rachel Nuttall, Christian Sorg
Software Mentions: 1
Published: almost 7 years ago

10.3389/fnut.2018.00030

A “Fork-to-Farm” Multi-Scale Approach to Promote Sustainable Food Systems for Nutrition and Health: A Perspective for the Mediterranean Region
Cited by: 17
Author(s): Eric O. Verger, Marlène Pérignon, Jalila El Ati, Nicole Darmon, Marie‐Claude Dop, Sophie Drogué, Sandrine Dury, Cédric Gaillard, Carole Sinfort, Marie-Josèphe Amiot
Software Mentions: 1
Published: over 6 years ago

10.1186/s12711-021-00610-9

Optimum mating designs for exploiting dominance in genomic selection schemes for aquaculture species
Cited by: 22
Author(s): Jesús Fernández, Beatriz Villanueva, Miguel Á Toro
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12978-021-01091-1

“As a woman who watches how my family is… I take the difficult decisions”: a qualitative study on integrated family planning and childhood immunisation services in five African countries
Cited by: 5
Author(s): Jenna Hoyt, Shari Krishnaratne, Jessie K. Hamon, Lydia Boudarène, Tracey Chantler, Shiferaw Dechasa Demissie, Justine Landegger, Easterlina Moseti, Seth Marcus, Misozi Kambanje, Shannon Pryor, Nathaly Spilotros, Marius Gnintoungbe, Dora Curry, Jayne Webster
Software Mentions: 1
Published: almost 4 years ago

10.1016/j.respol.2020.104140

Appraising research policy instrument mixes: a multicriteria mapping study in six European countries of diagnostic innovation to manage antimicrobial resistance
Cited by: 6
Author(s): Josie Coburn, Frédérique Bone, Michael M. Hopkins, Andy Stirling, J. Mestre-Ferrandiz, Stathis Arapostathis, Martin J. Llewelyn
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-017-19139-3

Large unexplained suite of chemically reactive compounds present in ambient air due to biomass fires
Cited by: 46
Author(s): Vinod Kumar, B. P. Chandra, Vinayak Sinha
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-020-63015-6

Synthesis of mesoporous silica post-loaded by methyl eugenol as an environment-friendly slow-release bio pesticide
Cited by: 14
Author(s): Huayao Chen, Lishen Chen, Zhichuan Shen, Hongjun Zhou, Hao Li, Hengyong Xu
Software Mentions: 1
Published: over 4 years ago

10.3390/s16020229

A Collaborative Secure Localization Algorithm Based on Trust Model in Underwater Wireless Sensor Networks
Cited by: 43
Author(s): Guangjie Han, Li Liu, Jinfang Jiang, Lei Shu, Joel J. P. C. Rodrigues
Software Mentions: 1
Published: almost 9 years ago

10.3390/s16081186

A Long-Term Performance Enhancement Method for FOG-Based Measurement While Drilling
Cited by: 13
Author(s): Chunxi Zhang, Lin Tie
Software Mentions: 1
Published: over 8 years ago

10.3390/s17092113

Developing Fine-Grained Actigraphies for Rheumatoid Arthritis Patients from a Single Accelerometer Using Machine Learning
Cited by: 18
Author(s): Javier Andreu-Pérez, Luis Garcia‐Gancedo, Jonathan McKinnell, Anniek van der Drift, Adam J. Powell, Valentin Hamy, Thomas Keller, Guang‐Zhong Yang
Software Mentions: 1
Published: about 7 years ago

10.1007/s11625-017-0438-0

Unpacking sustainabilities in diverse transition contexts: solar photovoltaic and urban mobility experiments in India and Thailand
Cited by: 35
Author(s): Rob Raven, Bipashyee Ghosh, Anna Wieczorek, Andrew Stirling, Debashri Ghosh, Suyash Jolly, Eakanut Karjangtimapron, Sidtinat Prabudhanitisarn, Joyashree Roy, Somporn Sangawongse, Frans Sengers
Software Mentions: 1
Published: over 7 years ago

10.5194/acp-17-2103-2017

Nitrate radicals and biogenic volatile organic compounds: oxidation, mechanisms, and organic aerosol
Cited by: 275
Author(s): N. L. Ng, Steven S. Brown, Alexander T. Archibald, Elliot L. Atlas, R. C. Cohen, John N. Crowley, Douglas A. Day, Neil M. Donahue, Juliane L. Fry, Hendrik Fuchs, Robert J. Griffin, Marcelo I. Guzmán, Hartmut Herrmann, Alma Hodzic, Yoshiteru Iinuma, José L. Jimenez, Astrid Kiendler‐Scharr, Ho-Chang Lee, Deborah Luecken, J. Mao, R. McLaren, Anke Mutzel, Hans D. Osthoff, Bin Ouyang, Bénédicte Picquet‐Varrault, U. Platt, Havala O. T. Pye, Yinon Rudich, Cenlin He, Manabu Shiraiwa, J. Stutz, Joel A. Thornton, Andreas Tilgner, Brent J. Williams, Rahul A. Zaveri
Software Mentions: 1
Published: almost 8 years ago

10.3390/ijerph17217969

Evaluating Animal-Based Foods and Plant-Based Alternatives Using Multi-Criteria and SWOT Analyses
Cited by: 18
Author(s): Juan Ferrer, Consuelo Varela‐Ortega, Rhys Manners
Software Mentions: 1
Published: about 4 years ago

10.7554/eLife.52443

Reconfiguration of functional brain networks and metabolic cost converge during task performance
Cited by: 43
Author(s): Andreas Hahn, Michael Breakspear, Lucas Rischka, Wolfgang Wadsak, Godber Mathis Godbersen, Verena Pichler, Paul Michenthaler, Thomas Vanicek, Siegfried Kasper, Rupert Lanzenberger, Luca Cocchi
Software Mentions: 1
Published: over 4 years ago

10.7554/eLife.07600

Consistent global structures of complex RNA states through multidimensional chemical mapping
Cited by: 54
Author(s): Clarence Yu Cheng, Fang‐Chieh Chou, Wipapat Kladwang, Siqi Tian, Pablo Cordero, Rhiju Das
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2156-10-70

Optimization of selection contribution and mate allocations in monoecious tree breeding populations
Cited by: 7
Author(s): Jon Hallander, Patrik Waldmann
Software Mentions: 1
Published: about 15 years ago

10.3390/ma12203367

Probabilistic Fatigue/Creep Optimization of Turbine Bladed Disk with Fuzzy Multi-Extremum Response Surface Method
Cited by: 16
Author(s): Chunyi Zhang, Zhe-Shan Yuan, Ze Wang, Chengwei Fei, Cheng Lu
Software Mentions: 1
Published: about 5 years ago

10.1111/2041-210X.12854

Classifying ecosystems with metaproperties from terrestrial laser scanner data
Cited by: 7
Author(s): Ian Paynter, Daniel Genest, E. J. Saenz, Francesco Peri, Peter Boucher, Жан Ли, Alan H. Strahler, Crystal B. Schaaf
Software Mentions: 1
Published: over 7 years ago

10.1111/j.1365-2958.2009.06744.x

Functional roles of the pre-sensor I insertion sequence in an AAA+ bacterial enhancer binding protein
Cited by: 12
Author(s): Patricia C. Burrows, Julia Schumacher, Samuel Amartey, Tamaswati Ghosh, Timothy A. Burgis, Xiaodong Zhang, B. Tracy Nixon, Martin Buck
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pbio.0050076

Superfamily Assignments for the Yeast Proteome through Integration of Structure Prediction with the Gene Ontology
Cited by: 52
Author(s): Lars Malmström, Michael Riffle, Charlie E. M. Strauss, Dylan Chivian, Trisha N. Davis, Richard Bonneau, David Baker
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pntd.0003918

Haemophilus ducreyi Cutaneous Ulcer Strains Are Nearly Identical to Class I Genital Ulcer Strains
Cited by: 23
Author(s): Dharanesh Gangaiah, Kristen M. Webb, Tricia L. Humphreys, Kate R. Fortney, David E. Nelson, Albert Tai, Samantha S. Katz, Allan Pillay, Cheng Yen Chen, Sally Roberts, Robert S. Munson, Stanley M. Spinola
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.08208

Calibration and analysis of genome-based models for microbial ecology
Cited by: 51
Author(s): Stilianos Louca, Michael Doebeli
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0146732

CERENA: ChEmical REaction Network Analyzer—A Toolbox for the Simulation and Analysis of Stochastic Chemical Kinetics
Cited by: 37
Author(s): Atefeh Kazeroonian, Fabian Fröhlich, Andreas Raue, Fabian J. Theis, Jan Hasenauer
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0007075

Proteomic Interrogation of Androgen Action in Prostate Cancer Cells Reveals Roles of Aminoacyl tRNA Synthetases
Cited by: 50
Author(s): Adaikkalam Vellaichamy, Arun Sreekumar, John R. Strahler, Theckelnaycke Rajendiran, Jindan Yu, Sooryanarayana Varambally, Yong Li, Gilbert S. Omenn, Arul M. Chinnaiyan, Alexey I. Nesvizhskii
Software Mentions: 1
Published: about 15 years ago

Projects: cran: MCM

Papers Mentioning MCM 53