Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: SWIM
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/SWIM
Scenario Weights for Importance Measurement
5 versions
Latest release: over 2 years ago
146 downloads last month
Papers Mentioning SWIM 48
10.1038/s41598-020-67753-5
Quiescent stem cell marker genes in glioma gene networks are sufficient to distinguish between normal and glioblastoma (GBM) samplesCited by: 13
Author(s): Shradha Mukherjee
Software Mentions: 14
Published: about 4 years ago
10.7717/peerj.9161
Personalized analysis of breast cancer using sample-specific networksCited by: 3
Author(s): Ke Zhu, Cong Pian, Qiong Xiang, Xin Liu, Yuanyuan Chen
Software Mentions: 4
Published: over 4 years ago
10.1371/journal.pone.0222921
Computational identification of key genes that may regulate gene expression reprogramming in Alzheimer’s patientsCited by: 20
Author(s): Judith A. Potashkin, Virginie Bottero, José A. Santiago, James P. Quinn
Software Mentions: 3
Published: almost 5 years ago
10.3390/proteomes6020027
Large Scale Proteomic Data and Network-Based Systems Biology Approaches to Explore the Plant WorldCited by: 18
Author(s): Dario Di Silvestre, Andrea Bergamaschi, Edoardo Bellini, Pierluigi Mauri
Software Mentions: 3
Published: over 6 years ago
10.1038/srep25755
An integrated soil-crop system model for water and nitrogen management in North ChinaCited by: 69
Author(s): Hao Liang, Kelin Hu, William D. Batchelor, Zhiming Qi, Baoguo Li
Software Mentions: 3
Published: over 8 years ago
10.1038/s41598-020-60228-7
Integrated transcriptomic correlation network analysis identifies COPD molecular determinantsCited by: 32
Author(s): Paola Paci, Giulia Fiscon, Federica Conte, Valerio Licursi, Jarrett Morrow, Craig P. Hersh, Michael H. Cho, Peter J. Castaldi, Kimberly Glass, Edwin K. Silverman, Lorenzo Farina
Software Mentions: 3
Published: over 4 years ago
10.1186/s12859-018-2421-x
SWIM tool application to expression data of glioblastoma stem-like cell lines, corresponding primary tumors and conventional glioma cell linesCited by: 25
Author(s): Giulia Fiscon, Federica Conte, Paola Paci
Software Mentions: 2
Published: almost 6 years ago
10.3390/ijms21113787
Bioinformatic Analysis Reveals Phosphodiesterase 4D-Interacting Protein as a Key Frontal Cortex Dementia Switch GeneCited by: 11
Author(s): Judith A. Potashkin, Virginie Bottero, José A. Santiago, James P. Quinn
Software Mentions: 2
Published: over 4 years ago
10.3390/ijms21186690
The New Paradigm of Network Medicine to Analyze Breast Cancer PhenotypesCited by: 20
Author(s): Anna Grimaldi, Federica Conte, Katia Pane, Giulia Fiscon, Peppino Mirabelli, Simona Baselice, Rosa Giannatiempo, Francesco Messina, Monica Franzese, Marco Salvatore, Paola Paci, Mariarosaria Incoronato
Software Mentions: 2
Published: about 4 years ago
10.3390/ijms22083915
Key Disease Mechanisms Linked to Alzheimer’s Disease in the Entorhinal CortexCited by: 13
Author(s): Virginie Bottero, Dallen Powers, Ashna Yalamanchi, James P. Quinn, Judith A. Potashkin
Software Mentions: 2
Published: over 3 years ago
10.12688/f1000research.24469.2
The use of ‘PICO for synthesis’ and methods for synthesis without meta-analysis: protocol for a survey of current practice in systematic reviews of health interventionsCited by: 11
Author(s): Miranda Cumpston, Joanne E. McKenzie, James Thomas, Sue Brennan
Software Mentions: 2
Published: over 3 years ago
10.1038/s41598-020-80820-1
Coupling machine learning and crop modeling improves crop yield prediction in the US Corn BeltCited by: 124
Author(s): Mohsen Shahhosseini, Guiping Hu, Isaiah Huber, Sotirios Archontoulis
Software Mentions: 2
Published: over 3 years ago
10.3389/fpls.2016.01630
Modeling Long-Term Corn Yield Response to Nitrogen Rate and Crop RotationCited by: 87
Author(s): Laila A. Puntel, John E. Sawyer, Daniel W. Barker, Ranae Dietzel, Hanna J. Poffenbarger, Michael J. Castellano, Kenneth J. Moore, Peter J. Thorburn, Sotirios Archontoulis
Software Mentions: 2
Published: almost 8 years ago
10.1186/s13148-021-01047-z
Clinical epigenetics settings for cancer and cardiovascular diseases: real-life applications of network medicine at the bedsideCited by: 30
Author(s): Federica Sarno, Giuditta Benincasa, Markus List, Albert-Lazlo Barabasi, Jan Baumbach, Fortunato Ciardiello, Sébastiano Filetti, Kimberly Glass, Joseph Loscalzo, Cinzia Marchese, Bradley A. Maron, Paola Paci, Paolo Parini, Enrico Petrillo, Edwin K. Silverman, Antonella Verrienti, Lucia Altucci, Claudio Napoli
Software Mentions: 2
Published: over 3 years ago
10.3390/s21041422
Does Free Route Implementation Influence Air Traffic Management System? Case Study in PolandCited by: 6
Author(s): Ewa Dudek, Karolina Krzykowska-Piotrowska
Software Mentions: 2
Published: over 3 years ago
10.3390/jimaging5030034
High-Throughput Line Buffer Microarchitecture for Arbitrary Sized Streaming Image ProcessingCited by: 4
Author(s): Runbin Shi, Justin S. J. Wong, Hayden Kwok-Hay So
Software Mentions: 2
Published: over 5 years ago
10.1111/gcb.15289
A framework for modelling soil structure dynamics induced by biological activityCited by: 53
Author(s): Katharina Meurer, Jennie Barron, Claire Chenu, Elsa Coucheney, Matthew Fielding, Paul D. Hallett, Anke M. Herrmann, Thomas Keller, John Koestel, Mats Larsbo, Elisabet Lewan, Dani Or, David Parsons, Nargish Parvin, Astrid Taylor, Harry Vereecken, Nicholas Jarvis
Software Mentions: 1
Published: about 4 years ago
10.4102/jamba.v8i1.185
Modelling non-stationary annual maximum flood heights in the lower Limpopo River basin of MozambiqueCited by: 9
Author(s): Daniel Maposa, James J. Cochran, Maseka Lesaoana
Software Mentions: 1
Published: over 8 years ago
10.1155/2016/9305018
Novel Pattern of Iron Deposition in the Fascicula Nigrale in Patients with Parkinson’s Disease: A Pilot StudyCited by: 4
Author(s): Miriam E. Peckham, Khashayar Dashtipour, Barbara A. Holshouser, Camellia Kani, Alex Boščanin, Kayvan Kani, Sheri Harder
Software Mentions: 1
Published: over 8 years ago
10.1007/s10113-018-1328-4
Improving the representation of adaptation in climate change impact modelsCited by: 40
Author(s): Ian P. Holman, Calum Brown, Timothy R. Carter, Paula A. Harrison, Mark Rounsevell
Software Mentions: 1
Published: over 6 years ago
10.1111/risa.13454
Who Should Pay for Interdependent Risk? Policy Implications for Security Interdependence Among AirportsCited by: 8
Author(s): Gabriel M. Kuper, Fabio Massacci, Woohyun Shim, Julian Williams
Software Mentions: 1
Published: over 4 years ago
10.1038/srep44797
SWIM: a computational tool to unveiling crucial nodes in complex biological networksCited by: 48
Author(s): Paola Paci, Teresa Colombo, Giulia Fiscon, Aymone Gurtner, Giulio Pavesi, Lorenzo Farina
Software Mentions: 1
Published: over 7 years ago
10.1038/srep46843
Erratum: SWIM: a computational tool to unveiling crucial nodes in complex biological networksCited by: 3
Author(s): Paola Paci, Teresa Colombo, Giulia Fiscon, Aymone Gurtner, Giulio Pavesi, Lorenzo Farina
Software Mentions: 1
Published: over 7 years ago
10.1038/s41598-018-26081-5
Computational identification of specific genes for glioblastoma stem-like cells identityCited by: 41
Author(s): Giulia Fiscon, Federica Conte, Valerio Licursi, Sergio Nasi, Paola Paci
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-021-94072-0
The role of FOSL1 in stem-like cell reprogramming processesCited by: 12
Author(s): Valeria Pecce, Antonella Verrienti, Giulia Fiscon, Marialuisa Sponziello, Federica Conte, Luana Abballe, Cosimo Durante, Lorenzo Farina, Sébastiano Filetti, Paola Paci
Software Mentions: 1
Published: about 3 years ago
10.3390/s100908348
Minimum Expected Delay-Based Routing Protocol (MEDR) for Delay Tolerant Mobile Sensor NetworksCited by: 9
Author(s): Yong Feng, Ming Liu, Xiaomin Wang, Haigang Gong
Software Mentions: 1
Published: about 14 years ago
10.3390/s150923218
Adaptive Data Gathering in Mobile Sensor Networks Using Speedy Mobile ElementsCited by: 22
Author(s): Yongxuan Lai, Jinshan Xie, Ziyu Lin, Tian Wang, Minghong Liao
Software Mentions: 1
Published: about 9 years ago
10.3390/s18093000
Efficient Interference Estimation with Accuracy Control for Data-Driven Resource Allocation in Cloud-RANCited by: 3
Author(s): Yanchao Zhao, Jie Wu, Wenzhong Li, Sanglu Lu
Software Mentions: 1
Published: about 6 years ago
10.3390/s20174872
High Spatiotemporal Resolution Mapping of Surface Water in the Southwest Poyang Lake and Its Responses to Climate OscillationsCited by: 4
Author(s): Haifeng Tian, Jian Wang, Jie Pei, Yaochen Qin, Lijun Zhang, Wang Yong-Jiu
Software Mentions: 1
Published: about 4 years ago
10.3390/ijerph16214263
Content Comparison of Aquatic Therapy Outcome Measures for Children with Neuromuscular and Neurodevelopmental Disorders Using the International Classification of Functioning, Disability, and HealthCited by: 9
Author(s): Javier Güeita‐Rodríguez, Lidiane Lima Florêncio, José Luis Arias-Buría, Johan Lambeck, César Fernández‐de‐las‐Peñas, Domingo Palacios‐Ceña
Software Mentions: 1
Published: almost 5 years ago
10.3390/ijerph17176292
Atmospheric Biodetection Part I: Study of Airborne Bacterial Concentrations from January 2018 to May 2020 at Saclay, FranceCited by: 4
Author(s): Roland Sarda‐Estève, Dominique Baisnée, Benjamin Guinot, Gediminas Mainelis, John R. Sodeau, David J. O’Connor, Jean Pierre Besancenot, M. Thibaudon, Sara Monteiro, Jean-Eudes Petit, Valérie Gros
Software Mentions: 1
Published: about 4 years ago
10.3390/ani10091585
From Land to Water: Taking Fish Welfare SeriouslyCited by: 11
Author(s): Walter Sánchez-Suárez, Becca Franks, Lauri Torgerson-White
Software Mentions: 1
Published: about 4 years ago
10.3390/ijms22137150
Network Analysis Identifies Sex-Specific Gene Expression Changes in Blood of Amyotrophic Lateral Sclerosis PatientsCited by: 10
Author(s): José A. Santiago, James P. Quinn, Judith A. Potashkin
Software Mentions: 1
Published: about 3 years ago
10.1186/s12874-015-0082-2
A re-randomisation design for clinical trialsCited by: 19
Author(s): Brennan C Kahan, Andrew Benjamin Forbes, Caroline J Doré, Tim P Morris
Software Mentions: 1
Published: almost 9 years ago
10.1186/1471-2202-15-62
ERP correlates of German Sign Language processing in deaf native signersCited by: 17
Author(s): Barbara Hänel-Faulhaber, Nils Skotara, Monique Kügow, Uta Salden, Davide Bottari, Brigitte Röder
Software Mentions: 1
Published: over 10 years ago
10.1186/s12894-020-00670-x
Current status of genetic urinary biomarkers for surveillance of non-muscle invasive bladder cancer: a systematic reviewCited by: 3
Author(s): F. Lozano, Carles X. Raventós, A. Carrión, E. Trilla, Juan Moróte
Software Mentions: 1
Published: about 4 years ago
10.1136/bmjopen-2016-011276
SWIM (sickle with ibuprofen and morphine) randomised controlled trial fails to recruit: lessons learntCited by: 3
Author(s): Gavin Cho, Kofi A. Anie, J Buckton, Patricia Kiilu, Mark Layton, Lydia Alexander, Claire Hemmaway, Dorothy Sutton, Claire Amos, Caroline J Doré, Brennan C Kahan, Sarah Meredith
Software Mentions: 1
Published: over 8 years ago
10.14814/phy2.13816
Does competitive swimming affect lung growth?Cited by: 12
Author(s): Joshua Bovard, Joseph F. Welch, Kristin Houghton, Donald C. McKenzie, James E. Potts, A. William Sheel
Software Mentions: 1
Published: about 6 years ago
10.3390/plants10030570
Genome-Wide Identification and Characterization of the CsFHY3/FAR1 Gene Family and Expression Analysis under Biotic and Abiotic Stresses in Tea Plants (Camellia sinensis)Cited by: 11
Author(s): Zhengjun Liu, Chuanjing An, Yiqing Zhao, Yao Xiao, Liang Bao, Chunmei Gong, Yuefang Gao
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pgen.1002931
A Gene Family Derived from Transposable Elements during Early Angiosperm Evolution Has Reproductive Fitness Benefits in Arabidopsis thalianaCited by: 48
Author(s): Zoé Joly‐Lopez, Ewa Forczek, Douglas R. Hoen, Nikoleta Juretic, Thomas E. Bureau
Software Mentions: 1
Published: about 12 years ago
10.1371/journal.pone.0118061
Cerebral Hemodynamic Changes of Mild Traumatic Brain Injury at the Acute StageCited by: 89
Author(s): Hardik Doshi, Natalie Wiseman, Jun Liu, Wentao Wang, Robert D. Welch, Brian J. O’Neil, Conor Zuk, Xiao Wang, Valerie Mika, Jerzy P. Szaflarski, E. Mark Haacke, Zhifeng Kou
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0193890
Optimized 3D co-registration of ultra-low-field and high-field magnetic resonance imagesCited by: 5
Author(s): Roberto Guidotti, Raffaele Sinibaldi, Cinzia De Luca, Allegra Conti, Risto J. Ilmoniemi, Koos C. J. Zevenhoven, Per E. Magnelind, Vittorio Pizzella, Cosimo Del Gratta, Gian Luca Romani, Stefania Della Penna
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0213033
Simple, sensitive and robust chicken specific sexing assays, compliant with large scale analysisCited by: 13
Author(s): Liyan He, Priscila Silveira Martins, Joris Huguenin, Thi Nhu Ngoc Van, Taciana Manso, Therese Galindo, Flavien Gregoire, Lise Catherinot, Franck Molina, Julien Espeut
Software Mentions: 1
Published: over 5 years ago
10.1007/s10618-017-0548-4
Data-driven generation of spatio-temporal routines in human mobilityCited by: 81
Author(s): Luca Pappalardo, Filippo Simini
Software Mentions: 1
Published: over 6 years ago
10.1007/s00267-019-01188-1
Assessment of Socio-Economic and Climate Change Impacts on Water Resources in Four European Lagoon CatchmentsCited by: 12
Author(s): Anastassi Stefanova, Cornelia Hesse, Valentina Krysanova, Martin Völk
Software Mentions: 1
Published: almost 5 years ago
10.3389/fpls.2018.00436
A Systems Modeling Approach to Forecast Corn Economic Optimum Nitrogen RateCited by: 35
Author(s): Laila A. Puntel, John E. Sawyer, Daniel W. Barker, Peter J. Thorburn, Michael J. Castellano, Kenneth J. Moore, Andy VanLoocke, Emily A. Heaton, Sotirios Archontoulis
Software Mentions: 1
Published: over 6 years ago
10.3389/fpls.2020.00062
Modeling Flood-Induced Stress in SoybeansCited by: 32
Author(s): Heather R. Pasley, Isaiah Huber, Michael J. Castellano, Sotirios Archontoulis
Software Mentions: 1
Published: over 4 years ago
10.3390/genes9090437
Network-Based Approaches to Explore Complex Biological Systems towards Network MedicineCited by: 54
Author(s): Giulia Fiscon, Federica Conte, Lorenzo Farina, Paola Paci
Software Mentions: 1
Published: about 6 years ago