cran: phylolm | Projects | Ecosyste.ms: Papers

10.1371/journal.pcbi.1006242

Phylogeny-corrected identification of microbial gene families relevant to human gut colonization
Cited by: 29
Author(s): Patrick H. Bradley, Stephen Nayfach, Katherine S. Pollard
Software Mentions: 27
Published: over 6 years ago

10.7717/peerj.1668

Monogenean anchor morphometry: systematic value, phylogenetic signal, and evolution
Cited by: 26
Author(s): Tsung Fei Khang, Oi Yoon Michelle Soo, Wooi Boon Tan, L. H. S. Lim
Software Mentions: 13
Published: almost 9 years ago

10.12688/f1000research.7082.3

EvolQG - An R package for evolutionary quantitative genetics
Cited by: 31
Author(s): Diogo Melo, Guilherme Garcia, Alex Hubbe, Ana Paula A. Assis, Gabriel Marroig
Software Mentions: 13
Published: about 8 years ago

10.1002/ece3.5645

Testing adaptive hypotheses on the evolution of larval life history in acorn and stalked barnacles
Cited by: 11
Author(s): Christine Ewers‐Saucedo, Paula Pappalardo
Software Mentions: 13
Published: over 5 years ago

10.1098/rspb.2021.0853

Adaptations to light contribute to the ecological niches and evolution of the terrestrial avifauna
Cited by: 11
Author(s): Ian J. Ausprey
Software Mentions: 10
Published: over 3 years ago

10.1371/journal.pone.0226203

Mating strategy is determinant of adenovirus prevalence in European bats
Cited by: 4
Author(s): Federica Rossetto, María Iglesias-Caballero, H. Christoph Liedtke, Iván Gómez-Mestre, José Miguel Berciano, Gonzalo Pérez-Suárez, Óscar de Paz, Carlos Ibáñez, Juan E. Echevarrı́a, Inmaculada Casas
Software Mentions: 10
Published: almost 5 years ago

10.3389/fpubh.2018.00235

One Health Relationships Between Human, Animal, and Environmental Microbiomes: A Mini-Review
Cited by: 110
Author(s): Pauline Trinh, Jesse Zaneveld, Sarah Safranek, Peter Rabinowitz
Software Mentions: 10
Published: over 6 years ago

10.1371/journal.pone.0199129

The microstructure of white feathers predicts their visible and near-infrared reflectance properties
Cited by: 23
Author(s): Devi Stuart‐Fox, Elizabeth Newton, Raoul A. Mulder, Liliana D’Alba, Matthew D. Shawkey, Branislav Igic
Software Mentions: 8
Published: over 6 years ago

10.1098/rspb.2020.1585

The signature of competition in ecomorphological traits across the avian radiation
Cited by: 8
Author(s): Angela-Maria Chira, Christopher R. Cooney, Jen A. Bright, E. J. R., Emma C. Hughes, Christopher J. Moody, Lara O Nouri, Zoë K Varley, Gavin H. Thomas
Software Mentions: 8
Published: about 4 years ago

10.1371/journal.pone.0231526

Disentangling the influence of ecological and historical factors on seed germination and seedling types in a Neotropical dry forest
Cited by: 5
Author(s): Jorge Cortés‐Flores, Guadalupe Cornejo‐Tenorio, María Esther Sánchez‐Coronado, Alma Orozco‐Segovia, Guillermo Ibarra‐Manríquez
Software Mentions: 8
Published: over 4 years ago

10.7717/peerj.4718

phylopath: Easy phylogenetic path analysis in R
Cited by: 90
Author(s): Wouter van der Bijl
Software Mentions: 7
Published: over 6 years ago

10.1111/acel.12740

Comparative transcriptomics across 14Drosophilaspecies reveals signatures of longevity
Cited by: 33
Author(s): Siming Ma, Andrei Avanesov, Emily Porter, Byeong Cheol Lee, Marco Mariotti, Nadezhda Zemskaya, Roderic Guigó, Alexey Moskalev, Vadim N. Gladyshev
Software Mentions: 6
Published: over 6 years ago

10.1186/s12862-021-01880-z

Radiating pain: venom has contributed to the diversification of the largest radiations of vertebrate and invertebrate animals
Cited by: 3
Author(s): Kevin Arbuckle, Richard J. Harris
Software Mentions: 6
Published: over 3 years ago

10.1093/molbev/msab079

Rubisco Adaptation Is More Limited by Phylogenetic Constraint Than by Catalytic Trade-off
Cited by: 28
Author(s): Jacques W. Bouvier, David Emms, Timothy Rhodes, Jai S Bolton, Amelia Brasnett, Alice Eddershaw, Jochem Nielsen, A Unitt, Spencer M. Whitney, Steven Kelly
Software Mentions: 6
Published: almost 4 years ago

10.1098/rsos.181182

Phylogeny matters: revisiting ‘a comparison of bats and rodents as reservoirs of zoonotic viruses’
Cited by: 23
Author(s): Cylita Guy, Jeneni Thiagavel, Nicole Mideo, John M. Ratcliffe
Software Mentions: 6
Published: almost 6 years ago

10.1186/s12898-019-0220-5

Ecological and life history traits are associated with Ross River virus infection among sylvatic mammals in Australia
Cited by: 11
Author(s): Michael Walsh
Software Mentions: 5
Published: almost 6 years ago

10.1111/evo.13948

The evolution of autotomy in leaf‐footed bugs
Cited by: 28
Author(s): Zachary Emberts, Colette M. St. Mary, Cody Coyotee Howard, Michael Forthman, Philip W. Bateman, Ummat Somjee, Wei Song Hwang, Daiqin Li, Rebecca T. Kimball, Charles H. Miller
Software Mentions: 5
Published: over 4 years ago

10.1128/AEM.02012-16

Long-Term Warming Alters Carbohydrate Degradation Potential in Temperate Forest Soils
Cited by: 58
Author(s): Grace Pold, Andrew F. Billings, Jeffrey L. Blanchard, Daniel Burkhardt, Serita D. Frey, Jerry M. Melillo, Julia Schnabel, Linda T. A. van Diepen, Kristen M. DeAngelis
Software Mentions: 5
Published: about 8 years ago

10.1093/molbev/msy198

Phylotranscriptomic Insights into the Diversification of EndothermicThunnusTunas
Cited by: 13
Author(s): Adam Ciezarek, Owen G. Osborne, Oliver N. Shipley, Edward J. Brooks, S Tracey, Jaime D. McAllister, Luke D. Gardner, Michael J.E. Sternberg, Barbara A. Block, Vincent Savolainen
Software Mentions: 5
Published: about 6 years ago

10.1038/s41598-019-39853-4

Climate and symbioses with ants modulate leaf/stem scaling in epiphytes
Cited by: 1
Author(s): Guillaume Chomicki, Susanne S. Renner
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0154871

Fruiting Season Length Restricts Global Distribution of Female-Only Parental Care in Frugivorous Passerine Birds
Cited by: 8
Author(s): Sahas Barve, Frank A. La Sorte
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-018-23292-8

Fungal spore diversity reflects substrate-specific deposition challenges
Cited by: 45
Author(s): Sara Calhim, Panu Halme, Jens H. Petersen, Thomas Læssøe, Claus Bässler, Jacob Heilmann‐Clausen
Software Mentions: 5
Published: over 6 years ago

10.1111/ele.13476

Angiosperm speciation cools down in the tropics
Cited by: 71
Author(s): Javier Igea, Andrew J. Tanentzap
Software Mentions: 4
Published: almost 5 years ago

10.1098/rsbl.2021.0309

Host and brood parasite coevolutionary interactions covary with comparative patterns of the avian visual system
Cited by: 1
Author(s): Ian J. Ausprey, Márk E. Hauber
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pgen.1008493

Linking high GC content to the repair of double strand breaks in prokaryotic genomes
Cited by: 38
Author(s): Jake L. Weissman, William F. Fagan, Philip L. F. Johnson
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0244299

An avian dominance hierarchy at a supplemental water source in the Patagonian steppe
Cited by: 2
Author(s): Sophie Rabinowicz, Natalia C. García, Tristan Herwood, Amanda Lazar, Benjamin Hein, Eliot T. Miller, Leonardo Campagna
Software Mentions: 3
Published: almost 4 years ago

10.1186/s12864-020-06980-6

Comparative genomic analysis of Vibrios yields insights into genes associated with virulence towards C. gigas larvae
Cited by: 8
Author(s): Hanna Kehlet-Delgado, Claudia C. Häse, Robert F. Mueller
Software Mentions: 3
Published: over 4 years ago

10.1242/jeb.242186

Diversity in rest–activity patterns among Lake Malawi cichlid fishes suggests a novel axis of habitat partitioning
Cited by: 8
Author(s): Evan Lloyd, Brian Chhouk, Andrew J. Conith, Alex C. Keene, R. Craig Albertson
Software Mentions: 3
Published: over 3 years ago

10.1098/rsos.160681

Chemical antipredator defence is linked to higher extinction risk
Cited by: 2
Author(s): Kevin Arbuckle
Software Mentions: 3
Published: about 8 years ago

10.3390/toxins11120711

Coevolution of Snake Venom Toxic Activities and Diet: Evidence that Ecological Generalism Favours Toxicological Diversity
Cited by: 39
Author(s): Emma-Louise Davies, Kevin Arbuckle
Software Mentions: 3
Published: about 5 years ago

10.1007/s00442-021-05014-6

Energy expenses on prey processing are comparable, but paid at a higher metabolic scope and for a longer time in ambush vs active predators: a multispecies study on snakes
Cited by: 2
Author(s): Stanisław Bury
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0222718

Widespread chytrid infection across frogs in the Peruvian Amazon suggests critical role for low elevation in pathogen spread and persistence
Cited by: 8
Author(s): Imani D. Russell, Joanna G. Larson, Rudolf von May, Iris Holmes, Timothy Y. James, Alison R. Davis Rabosky
Software Mentions: 3
Published: about 5 years ago

10.1016/j.isci.2021.102779

Copy number analyses of DNA repair genes reveal the role of poly(ADP-ribose) polymerase (PARP) in tree longevity
Cited by: 10
Author(s): Yuta Aoyagi Blue, Junko Kusumi, Akiko Satake
Software Mentions: 2
Published: over 3 years ago

10.3389/fpls.2020.01154

Deciphering the Biotic and Climatic Factors That Influence Floral Scents: A Systematic Review of Floral Volatile Emissions
Cited by: 42
Author(s): Gerard Farré‐Armengol, Marcos Fernández‐Martínez, Iolanda Filella, Robert R. Junker, Josep Peñuelas
Software Mentions: 2
Published: over 4 years ago

10.1038/s42003-019-0479-2

Expansion of vomeronasal receptor genes (OlfC) in the evolution of fright reaction in Ostariophysan fishes
Cited by: 12
Author(s): Liandong Yang, Haifeng Jiang, Ying Wang, Yi Lei, Juan Chen, Ning Sun, Wenqi Lv, Wang Cheng, Thomas J. Near, Shunping He
Software Mentions: 2
Published: over 5 years ago

10.1098/rspb.2021.0150

Repeated loss of variation in insect ovary morphology highlights the role of development in life-history evolution
Cited by: 18
Author(s): Samuel H. Church, Bruno A. S. de Medeiros, Seth Donoughe, Nicole L. Márquez Reyes, Cassandra G. Extavour
Software Mentions: 2
Published: over 3 years ago

10.3390/ani10081443

Large Lemurs: Ecological, Demographic and Environmental Risk Factors for Weight Gain in Captivity
Cited by: 4
Author(s): Emma Mellor, Innes C. Cuthill, Christoph Schwitzer, Georgia Mason, Michael Mendl
Software Mentions: 1
Published: over 4 years ago

10.1186/s40168-019-0698-2

Trait-based analysis of the human skin microbiome
Cited by: 20
Author(s): Sharon Bewick, Eliezer Gurarie, Jake L. Weissman, Jess Beattie, Cyrus Davati, Rachel Flint, Peter Thielen, Florian P. Breitwieser, David Karig, William F. Fagan
Software Mentions: 1
Published: over 5 years ago

10.1098/rsos.180893

Structural and wetting properties of nature's finest silks (order Embioptera)
Cited by: 8
Author(s): Grace Y. Stokes, Evangelea N. DiCicco, Trevor Moore, Vivian Cheng, Kira Y. Wheeler, John Soghigian, Richard Barber, Janice S. Edgerly
Software Mentions: 1
Published: over 6 years ago

10.1002/ece3.6313

Diversification in evolutionary arenas—Assessment and synthesis
Cited by: 27
Author(s): Nicolai M. Nürk, H. Peter Linder, Renske E. Onstein, Matthew J. Larcombe, Colin E. Hughes, Laura Piñeiro Fernández, Philipp M. Schlüter, Luís Valente, Carl Beierkuhnlein, Vanessa Cutts, Michael J. Donoghue, Erika J. Edwards, Richard Field, Suzette G. A. Flantua, Steven I. Higgins, Anke Jentsch, Sigrid Liede‐Schumann, Michael D. Pirie
Software Mentions: 1
Published: over 4 years ago

10.1186/s12864-015-1924-3

Gene loss, adaptive evolution and the co-evolution of plumage coloration genes with opsins in birds
Cited by: 49
Author(s): Rui Borges, Imran Khan, Warren E. Johnson, M. Thomas P. Gilbert, Guojie Zhang, Erich D. Jarvis, Stephen J. O’Brien, Agostinho Antunes
Software Mentions: 1
Published: about 9 years ago

10.3389/fpls.2021.632464

Higher Elevations Tend to Have Higher Proportion of Plant Species With Glandular Trichomes
Cited by: 4
Author(s): Rui Wu, Simcha Lev‐Yadun, Lu Sun, Hang Sun, Bo Song
Software Mentions: 1
Published: over 3 years ago

10.1186/s13059-014-0539-3

Low frequency of paleoviral infiltration across the avian phylogeny
Cited by: 56
Author(s): Jie Cui, Wei Zhao, Zhiyong Huang, Erich D. Jarvis, M. Thomas P. Gilbert, Peter Walker, Edward C. Holmes, Guojie Zhang
Software Mentions: 1
Published: about 10 years ago

10.1002/ece3.2820

Not all weeds are created equal: A database approach uncovers differences in the sexual system of native and introduced weeds
Cited by: 9
Author(s): Megan L. Van Etten, Jeffrey K. Conner, Shu‐Mei Chang, Regina S. Baucom
Software Mentions: 1
Published: almost 8 years ago

10.1016/j.xinn.2021.100167

Behavioral innovation promotes alien bird invasions
Cited by: 4
Author(s): Daiping Wang, Xuan Liu
Software Mentions: 1
Published: about 3 years ago

10.1038/s41598-018-26178-x

Vocal specialization through tracheal elongation in an extinct Miocene pheasant from China
Cited by: 5
Author(s): Zhiheng Li, Julia A. Clarke, Chad M. Eliason, Thomas A. Stidham, Tao Deng, Zhonghe Zhou
Software Mentions: 1
Published: over 6 years ago

10.1002/ece3.7290

Cell size, genome size, and maximum growth rate are near‐independent dimensions of ecological variation across bacteria and archaea
Cited by: 39
Author(s): Mark Westoby, Daniel A. Nielsen, Michael R. Gillings, Elena Litchman, Joshua S. Madin, Ian T. Paulsen, Sasha G. Tetu
Software Mentions: 1
Published: almost 4 years ago

Projects: cran: phylolm

Papers Mentioning phylolm 47