Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: freesurfer
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/freesurfer
Wrapper Functions for 'Freesurfer'
6 versions
Latest release: almost 4 years ago
1 dependent package
0 downloads
Papers Mentioning freesurfer 50
10.1186/s13742-016-0147-0
2015 Brainhack ProceedingsCited by: 6
Author(s): R. Cameron Craddock, Pierre Bellec, Daniel S. Margules, B. Nolan Nichols, Jörg P. Pfannmöller, AmanPreet Badhwar, David Kennedy, Jean‐Baptiste Poline, Roberto Toro, Ben Cipollini, Ariel Rokem, Daniel J. Clark, Krzysztof J. Gorgolewski, Daniel J. Clark, Samir Das, Cécile Madjar, Ayan Sengupta, Zia Mohades, Sébastien Déry, Weiran Deng, Eric Earl, Damion V. Demeter, Kate Mills, Glad Mihai, Luka Ružić, Nick Ketz, Andrew E. Reineberg, Marianne C. Reddan, Anne-Lise Goddings, Javier Gonzalez‐Castillo, Caroline Froehlich, Gil Dekel, Daniel S. Margulies, Ben D. Fulcher, Tristan Glatard, Reza Adalat, Natacha Beck, R. Bernard, Najmeh Khalili-Mahani, Pierre Rioux, Marc-Étienne Rousseau, Alan C. Evans, Yaroslav Halchenko, Matteo Visconti di Oleggio Castello, Raúl Hernández-Pérez, Edgar Abarca Morales, Laura V. Cuaya, Kaori Ito, Sook‐Lei Liew, Hans J. Johnson, Erik Kan, Julia Anglin, Michael R. Borich, Neda Jahanshad, Paul Thompson, Marcel Falkiewicz, Julia M. Huntenburg, David O’Connor, Michael P. Milham, Ramon Fraga Pereira, Anibal Sólon Heinsfeld, Alexandre R. Franco, Augusto Buchweitz, Felipe Meneguzzi, Rickson C. Mesquita, Luis C. T. Herrera, Daniela Dentico, Vanessa Sochat, Julio E. Villalon‐Reina, Eleftherios Garyfallidis
Software Mentions: 14
Published: about 8 years ago
10.3389/fninf.2017.00062
Semi-automated Anatomical Labeling and Inter-subject Warping of High-Density Intracranial Recording Electrodes in ElectrocorticographyCited by: 78
Author(s): Liberty S. Hamilton, David L. Chang, Morgan B. Lee, Edward F. Chang
Software Mentions: 9
Published: about 7 years ago
10.3389/fninf.2016.00036
A Multi-facetted Visual Analytics Tool for Exploratory Analysis of Human Brain and Function DatasetsCited by: 18
Author(s): Diego A. Angulo, Cyril Schneider, James H. Oliver, Nathalie Charpak, José Tiberio Hernández
Software Mentions: 8
Published: about 8 years ago
10.1093/cercor/bhaa348
The Functional Foundations of Episodic Memory Remain Stable Throughout the LifespanCited by: 3
Author(s): Didac Vidal‐Piñeiro, Markus Handal Sneve, Inge K. Amlien, Håkon Grydeland, Athanasia M. Mowinckel, James M Roe, Øystein Sørensen, Lars Nyberg, Kristine B. Walhovd, Anders M. Fjell
Software Mentions: 8
Published: almost 4 years ago
10.12688/f1000research.14361.1
freesurfer: Connecting the Freesurfer software with RCited by: 7
Author(s): John Muschelli, Elizabeth Sweeney, Ciprian M. Crainiceanu
Software Mentions: 8
Published: over 6 years ago
10.1371/journal.pone.0129074
Making Large-Scale Networks from fMRI DataCited by: 16
Author(s): Verena D. Schmittmann, Sara Jahfari, Denny Borsboom, Alexander Olof Savi, Lourens J. Waldorp
Software Mentions: 5
Published: about 9 years ago
10.3389/fninf.2017.00010
Automatic and Precise Localization and Cortical Labeling of Subdural and Depth Intracranial ElectrodesCited by: 29
Author(s): Chaoyi Qin, Zheng Tan, Yali Pan, Yanyan Li, Lin Wang, Liqiang Ren, Wenjing Zhou, Liang Wang
Software Mentions: 4
Published: almost 8 years ago
10.3389/fpsyt.2021.682495
Common Data Elements, Scalable Data Management Infrastructure, and Analytics Workflows for Large-Scale Neuroimaging StudiesCited by: 4
Author(s): Rayus Kuplicki, James Touthang, Obada Al Zoubi, Ahmad Mayeli, Masaya Misaki, NeuroMAP-Investigators, Robin L. Aupperle, T. Kent Teague, Brett A. McKinney, Martin P. Paulus, Jerzy Bodurka
Software Mentions: 4
Published: over 3 years ago
10.3389/fpsyt.2019.01018
Study Protocol: Transitions in Adolescent Girls (TAG)Cited by: 7
Author(s): Marjolein E.A. Barendse, Nandita Vijayakumar, Michelle Byrne, Jessica Flannery, Theresa W Cheng, John C. Flournoy, Benjamin W Nelson, Danielle Cosme, Arian Mobasser, Samantha J. Chavez, Lauren Hval, Bernadette Brady, Hanna Nadel, Alison Helzer, Elizabeth A. Shirtcliff, Nicholas Allen, Jennifer H. Pfeifer
Software Mentions: 3
Published: almost 5 years ago
10.1371/journal.pone.0218089
A comparison of in vivo MRI based cortical myelin mapping using T1w/T2w and R1 mapping at 3TCited by: 46
Author(s): Zahra Shams, David G. Norris, José P. Marques
Software Mentions: 3
Published: over 5 years ago
10.3389/fnhum.2021.641961
BCCT: A GUI Toolkit for Brain Structural Covariance Connectivity Analysis on MATLABCited by: 9
Author(s): Qiang Xu, Qirui Zhang, Gaoping Liu, Xuesong Dai, Xinyu Xie, Jing‐Ru Hao, Qian-Qian Yu, Ruoting Liu, Zixuan Zhang, Yulu Ye, Rongfeng Qi, Long Jiang Zhang, Zhang Zhi-qiang, Guangming Lu
Software Mentions: 3
Published: over 3 years ago
10.3389/fnins.2019.00097
A U-Net Deep Learning Framework for High Performance Vessel Segmentation in Patients With Cerebrovascular DiseaseCited by: 153
Author(s): Michelle Livne, Jana Rieger, Orhun Utku Aydin, Abdel Aziz Taha, E. Akay, Tabea Kossen, Jan Sobesky, John D. Kelleher, Kristian Hildebrand, Dietmar Frey, Vince I. Madai
Software Mentions: 3
Published: over 5 years ago
10.3389/fnins.2018.00268
Integrated fMRI Preprocessing Framework Using Extended Kalman Filter for Estimation of Slice-Wise MotionCited by: 4
Author(s): Basile Pinsard, Arnaud Boutin, Julien Doyon, Habib Benali
Software Mentions: 3
Published: over 6 years ago
10.1186/s13742-015-0045-x
Connectomics and new approaches for analyzing human brain functional connectivityCited by: 55
Author(s): R. Cameron Craddock, Rosalia L. Tungaraza, Michael P. Milham
Software Mentions: 3
Published: over 9 years ago
10.7554/eLife.22974
Visual field map clusters in human frontoparietal cortexCited by: 91
Author(s): Wayne E. Mackey, Jonathan Winawer, Clayton E. Curtis
Software Mentions: 3
Published: over 7 years ago
10.1038/s41598-020-79640-0
Adaptation to mis-pronounced speech: evidence for a prefrontal-cortex repair mechanismCited by: 6
Author(s): Esti Blanco-Elorrieta, Laura Gwilliams, Alec Marantz, Liina Pylkkänen
Software Mentions: 2
Published: almost 4 years ago
10.1371/journal.pone.0235879
Altered central pain processing in fibromyalgia—A multimodal neuroimaging case-control study using arterial spin labellingCited by: 4
Author(s): Monika Müller, Florian Wüthrich, Andrea Federspiel, Roland Wiest, Niklaus Egloff, Stephan Reichenbach, Aristomenis K. Exadaktylos, Peter Jüni, Michele Curatolo, Sebastian Walther
Software Mentions: 2
Published: almost 4 years ago
10.3389/fnins.2019.00284
Brainstorm Pipeline Analysis of Resting-State Data From the Open MEG ArchiveCited by: 47
Author(s): Guiomar Niso, François Tadel, Elizabeth Bock, Martin Cousineau, A. Santos, Sylvain Baillet
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pone.0104586
Graph-Based Inter-Subject Pattern Analysis of fMRI DataCited by: 29
Author(s): Sylvain Takerkart, Guillaume Auzias, Bertrand Thirion, Liva Ralaivola
Software Mentions: 2
Published: over 10 years ago
10.1007/s11682-016-9639-x
Increased brain connectivity and activation after cognitive rehabilitation in Parkinson’s disease: a randomized controlled trialCited by: 42
Author(s): María Díez‐Cirarda, Natalia Ojeda, Javier Peña, Alberto Cabrera‐Zubizarreta, Olaia Lucas‐Jiménez, Juan Carlos Gómez‐Esteban, Marian Gómez-Beldarrain, Naroa Ibarretxe‐Bilbao
Software Mentions: 1
Published: about 8 years ago
10.3390/children6030043
Morphological and Advanced Imaging of Epilepsy: Beyond the BasicsCited by: 9
Author(s): Aikaterini Fitsiori, Shivaprakash B Hiremath, José Boto, Valentina Garibotto, María Isabel Vargas
Software Mentions: 1
Published: over 5 years ago
10.1016/j.dib.2015.10.004
Benchmark data for sulcal pits extraction algorithmsCited by: 2
Author(s): Guillaume Auzias, Lucile Brun, Christine Deruelle, Olivier Coulon
Software Mentions: 1
Published: almost 9 years ago
10.1016/j.ebiom.2017.11.005
Human Leukocyte Antigen (HLA) and Gulf War Illness (GWI): HLA-DRB1*13:02 Spares Subcortical Atrophy in Gulf War VeteransCited by: 23
Author(s): Lisa M. James, Peka Christova, Brian Engdahl, Scott M. Lewis, Adam Carpenter, Apostolos P. Georgopoulos
Software Mentions: 1
Published: almost 7 years ago
10.1016/j.ebiom.2018.02.005
Protective Effect of Human Leukocyte Antigen (HLA) Allele DRB1*13:02 on Age-Related Brain Gray Matter Volume Reduction in Healthy WomenCited by: 17
Author(s): Lisa M. James, Peka Christova, Scott M. Lewis, Brian Engdahl, Angeliki Georgopoulos, Apostolos P. Georgopoulos
Software Mentions: 1
Published: over 6 years ago
10.1111/ejn.12888
Structural asymmetry of the insula is linked to the lateralization of gesture and languageCited by: 45
Author(s): Szymon P. Biduła, Grzegorz Króliczak
Software Mentions: 1
Published: over 9 years ago
10.1093/braincomms/fcab164
Incorporation of quantitative MRI in a model to predict temporal lobe epilepsy surgery outcomeCited by: 12
Author(s): Márcia Morita-Sherman, Manshi Li, Boney Joseph, Clarissa Lin Yasuda, Deborah Vegh, Brunno Machado de Campos, Marina K. M. Alvim, Shreya Louis, William Bingaman, Imad Najm, Stephen E. Jones, Xiaofeng Wang, Ingmar Blümcke, Benjamin H. Brinkmann, Gregory A. Worrell, Fernando Cendes, Lara Jehi
Software Mentions: 1
Published: almost 4 years ago
10.3389/fnagi.2015.00021
Impaired emotional autobiographical memory associated with right amygdalar-hippocampal atrophy in Alzheimer’s disease patientsCited by: 27
Author(s): Nathalie Philippi, Anne Botzung, Vincent Noblet, François Rousseau, Olivier Després, Benjamin Crétin, Stéphane Kremer, Frederic Blanc, Lilianne Manning
Software Mentions: 1
Published: over 9 years ago
10.3389/fnagi.2015.00087
Anterior cingulate cortex mediates the relationship between O3PUFAs and executive functions in APOE e4 carriersCited by: 27
Author(s): Marta K. Zamroziewicz, Erick J. Paul, Rachael D. Rubin, Aron K. Barbey
Software Mentions: 1
Published: over 9 years ago
10.3389/fnana.2015.00086
Prevalence of increases in functional connectivity in visual, somatosensory and language areas in congenital blindnessCited by: 19
Author(s): Lizette Heine, Mohamed Ali Bahri, Carlo Cavaliere, Andrea Soddu, Steven Laureys, Maurice Ptito, Ron Kupers
Software Mentions: 1
Published: over 9 years ago
10.1002/brb3.733
Feature selective temporal prediction of Alzheimer's disease progression using hippocampus surface morphometryCited by: 18
Author(s): Sinchai Tsao, Niharika Gajawelli, Jiayu Zhou, Jie Shi, Jieping Ye, Yalin Wang, Natasha Leporé
Software Mentions: 1
Published: over 7 years ago
10.1155/2015/160454
Advanced Morphological and Functional Magnetic Resonance Techniques in GlaucomaCited by: 10
Author(s): Rodolfo Mastropasqua, Luca Agnifili, Peter A. Mattei, Massimo Caulo, Vincenzo Fasanella, Riccardo Navarra, Leonardo Mastropasqua, Giorgio Marchini
Software Mentions: 1
Published: almost 10 years ago
10.1371/journal.pone.0075524
Early Exposure to Traumatic Stressors Impairs Emotional Brain CircuitryCited by: 28
Author(s): Mayuresh S. Korgaonkar, Cassandra Antees, Leanne M. Williams, Justine M. Gatt, Richard A. Bryant, Ronald A. Cohen, Robert Paul, Ruth O’Hara, Stuart M. Grieve
Software Mentions: 1
Published: about 11 years ago
10.3389/fnins.2013.00260
Rapid and efficient localization of depth electrodes and cortical labeling using free and open source medical software in epilepsy surgery candidatesCited by: 25
Author(s): Juan Pablo Princich, Demián Wassermann, Facundo Latini, Silvia Oddo, Alejandro Blenkmann, Gustavo Seifer, Sara Silvia Kochen
Software Mentions: 1
Published: almost 12 years ago
10.1038/s41598-021-91872-2
Pre-motor versus motor cerebral cortex neuromodulation for chronic neuropathic painCited by: 9
Author(s): Igor Lavrov, Timur Latypov, Elvira Mukhametova, Brian Nils Lundstrom, Paola Sandroni, Kendall Lee, Bryan T. Klassen, Matt Stead
Software Mentions: 1
Published: over 3 years ago
10.1038/tp.2017.74
Influences of prenatal and postnatal maternal depression on amygdala volume and microstructure in young childrenCited by: 139
Author(s): Wen Dj, Joann S. Poh, Ni Sn, Yap Seng Chong, H Chen, Kenneth Kwek, Lynette Pei‐Chi Shek, P. D. Gluckman, Fortier Mv, Meaney Mj, Qiu A
Software Mentions: 1
Published: over 7 years ago
10.1111/acel.12281
Alterations in brain leptin signalling in spite of unchanged <scp>CSF</scp> leptin levels in Alzheimer's diseaseCited by: 53
Author(s): Silvia Maioli, María F. Lodeiro, Paula Merino‐Serrais, Farshad Falahati, Wasim Khan, Elena Puerta, Alina Codita, Roberto Rimondini, Marı́a J. Ramı́rez, Andrew Simmons, Francisco J. Gil-Bea, Eric Westman, Ángel Cedazo-Mı́nguez
Software Mentions: 1
Published: almost 10 years ago
10.1186/s12888-019-2247-8
Case report: a giant arachnoid cyst masking Alzheimer’s diseaseCited by: 6
Author(s): Anna-Sophia Wahl, Martin Löffler, Lucrezia Hausner, Michaela Ruttorf, Frauke Nees, Lutz Frölich
Software Mentions: 1
Published: about 5 years ago
10.1002/gps.4719
The influence of hippocampal atrophy on the cognitive phenotype of dementia with Lewy bodiesCited by: 36
Author(s): Greg J. Elder, Karen Mactier, Sean J. Colloby, Rosie Watson, Andrew M. Blamire, John T. O’Brien, John‐Paul Taylor
Software Mentions: 1
Published: over 7 years ago
10.1186/1471-2377-13-68
COMBIT: protocol of a randomised comparison trial of COMbined modified constraint induced movement therapy and bimanual intensive training with distributed model of standard upper limb rehabilitation in children with congenital hemiplegiaCited by: 38
Author(s): Roslyn N. Boyd, Jenny Ziviani, Leanne Sakzewski, Laura Miller, Joanne Bowden, Ross Cunnington, Robert S. Ware, Andrea Guzzetta, Richard Macdonell, Graeme D. Jackson, David F. Abbott, Stephen Rose
Software Mentions: 1
Published: over 11 years ago
10.1002/hbm.24909
Modulating the global orientation bias of the visual system changes population receptive field elongationsCited by: 9
Author(s): Christian Merkel, Jens‐Max Hopf, Mircea Ariel Schoenfeld
Software Mentions: 1
Published: almost 5 years ago
10.1109/TRPMS.2018.2881248
Enhancement of Partial Volume Correction in MR-Guided PET Image Reconstruction by Using MRI Voxel SizesCited by: 11
Author(s): Martin A. Belzunce, Abolfazl Mehranian, Andrew J. Reader
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-017-10920-y
Altered topology of structural brain networks in patients with Gilles de la Tourette syndromeCited by: 9
Author(s): Eckhard Schlemm, Bastian Cheng, Felix Fischer, Claus C. Hilgetag, Christian Gerloff, Götz Thomalla
Software Mentions: 1
Published: about 7 years ago
10.1371/journal.pcbi.1002655
Human Motor Cortical Activity Is Selectively Phase-Entrained on Underlying RhythmsCited by: 186
Author(s): Kai J. Miller, Dora Hermes, Christopher J. Honey, Adam O. Hebb, Nick F. Ramsey, Robert T. Knight, Jeffrey G. Ojemann, Eberhard E. Fetz
Software Mentions: 1
Published: about 12 years ago
10.1371/journal.pone.0083767
Altered Topological Organization of Cortical Network in Adolescent Girls with Idiopathic ScoliosisCited by: 14
Author(s): Defeng Wang, Lin Shi, Shangping Liu, Steve C.N. Hui, Yongjun Wang, Jack C. Y. Cheng, Winnie C.W. Chu
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0069294
New Developments and Applications of the MP2RAGE Sequence - Focusing the Contrast and High Spatial Resolution R1 MappingCited by: 129
Author(s): José P. Marques, Rolf Gruetter
Software Mentions: 1
Published: over 11 years ago
10.1038/s41380-018-0023-7
Synaptic and transcriptionally downregulated genes are associated with cortical thickness differences in autismCited by: 118
Author(s): Rafael Romero-García, Varun Warrier, Edward T. Bullmore, Simon Baron‐Cohen, Richard A. I. Bethlehem
Software Mentions: 1
Published: over 6 years ago
10.1155/2015/963460
Different Temporal Patterns of Specific and General Autobiographical Memories across the Lifespan in Alzheimer’s DiseaseCited by: 8
Author(s): Nathalie Philippi, François Rousseau, Vincent Noblet, Anne Botzung, Olivier Després, Benjamin Crétin, Stéphane Kremer, Frederic Blanc, Lilianne Manning
Software Mentions: 1
Published: almost 10 years ago
10.1371/journal.pone.0065584
Increased Prefrontal Cortical Thickness Is Associated with Enhanced Abilities to Regulate Emotions in PTSD-Free Women with Borderline Personality DisorderCited by: 25
Author(s): Hannah Bruehl, Sandra Preißler, Isabella Heuser, Hauke R. Heekeren, Stefan Röepke, Isabel Dziobek
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0127396
Cortical Thickness in Dementia with Lewy Bodies and Alzheimer's Disease: A Comparison of Prodromal and Dementia StagesCited by: 85
Author(s): Frederic Blanc, Sean J. Colloby, Nathalie Philippi, Xavier de Pétigny, Barbara Jung, Catherine Demuynck, Clélie Phillipps, Pierre Anthony, Alan Thomas, Bing Fan, Julien Lamy, Catherine Milch, John T. O’Brien, Benjamin Crétin, Ian G. McKeith, Jean‐Paul Armspach, John‐Paul Taylor
Software Mentions: 1
Published: over 9 years ago
10.1038/s41598-018-36818-x
Hemispheric Regional Based Analysis of Diffusion Tensor Imaging and Diffusion Tensor Tractography in Patients with Temporal Lobe Epilepsy and Correlation with Patient outcomesCited by: 15
Author(s): Mahdi Alizadeh, Lauren Kozlowski, Jennifer Muller, Neha Ashraf, Shiva Shahrampour, Feroze B. Mohamed, Chengyuan Wu, Ashwini Sharan
Software Mentions: 1
Published: almost 6 years ago