cran: freesurfer | Projects | Ecosyste.ms: Papers

10.1186/s13742-016-0147-0

2015 Brainhack Proceedings
Cited by: 6
Author(s): R. Cameron Craddock, Pierre Bellec, Daniel S. Margules, B. Nolan Nichols, Jörg P. Pfannmöller, AmanPreet Badhwar, David Kennedy, Jean‐Baptiste Poline, Roberto Toro, Ben Cipollini, Ariel Rokem, Daniel J. Clark, Krzysztof J. Gorgolewski, Daniel J. Clark, Samir Das, Cécile Madjar, Ayan Sengupta, Zia Mohades, Sébastien Déry, Weiran Deng, Eric Earl, Damion V. Demeter, Kate Mills, Glad Mihai, Luka Ružić, Nick Ketz, Andrew E. Reineberg, Marianne C. Reddan, Anne-Lise Goddings, Javier Gonzalez‐Castillo, Caroline Froehlich, Gil Dekel, Daniel S. Margulies, Ben D. Fulcher, Tristan Glatard, Reza Adalat, Natacha Beck, R. Bernard, Najmeh Khalili-Mahani, Pierre Rioux, Marc-Étienne Rousseau, Alan C. Evans, Yaroslav Halchenko, Matteo Visconti di Oleggio Castello, Raúl Hernández-Pérez, Edgar Abarca Morales, Laura V. Cuaya, Kaori Ito, Sook‐Lei Liew, Hans J. Johnson, Erik Kan, Julia Anglin, Michael R. Borich, Neda Jahanshad, Paul Thompson, Marcel Falkiewicz, Julia M. Huntenburg, David O’Connor, Michael P. Milham, Ramon Fraga Pereira, Anibal Sólon Heinsfeld, Alexandre R. Franco, Augusto Buchweitz, Felipe Meneguzzi, Rickson C. Mesquita, Luis C. T. Herrera, Daniela Dentico, Vanessa Sochat, Julio E. Villalon‐Reina, Eleftherios Garyfallidis
Software Mentions: 14
Published: almost 8 years ago

10.3389/fninf.2017.00062

Semi-automated Anatomical Labeling and Inter-subject Warping of High-Density Intracranial Recording Electrodes in Electrocorticography
Cited by: 78
Author(s): Liberty S. Hamilton, David L. Chang, Morgan B. Lee, Edward F. Chang
Software Mentions: 9
Published: almost 7 years ago

10.3389/fninf.2016.00036

A Multi-facetted Visual Analytics Tool for Exploratory Analysis of Human Brain and Function Datasets
Cited by: 18
Author(s): Diego A. Angulo, Cyril Schneider, James H. Oliver, Nathalie Charpak, José Tiberio Hernández
Software Mentions: 8
Published: about 8 years ago

10.1093/cercor/bhaa348

The Functional Foundations of Episodic Memory Remain Stable Throughout the Lifespan
Cited by: 3
Author(s): Didac Vidal‐Piñeiro, Markus Handal Sneve, Inge K. Amlien, Håkon Grydeland, Athanasia M. Mowinckel, James M Roe, Øystein Sørensen, Lars Nyberg, Kristine B. Walhovd, Anders M. Fjell
Software Mentions: 8
Published: almost 4 years ago

10.12688/f1000research.14361.1

freesurfer: Connecting the Freesurfer software with R
Cited by: 7
Author(s): John Muschelli, Elizabeth Sweeney, Ciprian M. Crainiceanu
Software Mentions: 8
Published: over 6 years ago

10.1371/journal.pone.0129074

Making Large-Scale Networks from fMRI Data
Cited by: 16
Author(s): Verena D. Schmittmann, Sara Jahfari, Denny Borsboom, Alexander Olof Savi, Lourens J. Waldorp
Software Mentions: 5
Published: about 9 years ago

10.3389/fninf.2017.00010

Automatic and Precise Localization and Cortical Labeling of Subdural and Depth Intracranial Electrodes
Cited by: 29
Author(s): Chaoyi Qin, Zheng Tan, Yali Pan, Yanyan Li, Lin Wang, Liqiang Ren, Wenjing Zhou, Liang Wang
Software Mentions: 4
Published: over 7 years ago

10.3389/fpsyt.2021.682495

Common Data Elements, Scalable Data Management Infrastructure, and Analytics Workflows for Large-Scale Neuroimaging Studies
Cited by: 4
Author(s): Rayus Kuplicki, James Touthang, Obada Al Zoubi, Ahmad Mayeli, Masaya Misaki, NeuroMAP-Investigators, Robin L. Aupperle, T. Kent Teague, Brett A. McKinney, Martin P. Paulus, Jerzy Bodurka
Software Mentions: 4
Published: over 3 years ago

10.3389/fpsyt.2019.01018

Study Protocol: Transitions in Adolescent Girls (TAG)
Cited by: 7
Author(s): Marjolein E.A. Barendse, Nandita Vijayakumar, Michelle Byrne, Jessica Flannery, Theresa W Cheng, John C. Flournoy, Benjamin W Nelson, Danielle Cosme, Arian Mobasser, Samantha J. Chavez, Lauren Hval, Bernadette Brady, Hanna Nadel, Alison Helzer, Elizabeth A. Shirtcliff, Nicholas Allen, Jennifer H. Pfeifer
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0218089

A comparison of in vivo MRI based cortical myelin mapping using T1w/T2w and R1 mapping at 3T
Cited by: 46
Author(s): Zahra Shams, David G. Norris, José P. Marques
Software Mentions: 3
Published: about 5 years ago

10.3389/fnhum.2021.641961

BCCT: A GUI Toolkit for Brain Structural Covariance Connectivity Analysis on MATLAB
Cited by: 9
Author(s): Qiang Xu, Qirui Zhang, Gaoping Liu, Xuesong Dai, Xinyu Xie, Jing‐Ru Hao, Qian-Qian Yu, Ruoting Liu, Zixuan Zhang, Yulu Ye, Rongfeng Qi, Long Jiang Zhang, Zhang Zhi-qiang, Guangming Lu
Software Mentions: 3
Published: over 3 years ago

10.3389/fnins.2019.00097

A U-Net Deep Learning Framework for High Performance Vessel Segmentation in Patients With Cerebrovascular Disease
Cited by: 153
Author(s): Michelle Livne, Jana Rieger, Orhun Utku Aydin, Abdel Aziz Taha, E. Akay, Tabea Kossen, Jan Sobesky, John D. Kelleher, Kristian Hildebrand, Dietmar Frey, Vince I. Madai
Software Mentions: 3
Published: over 5 years ago

10.3389/fnins.2018.00268

Integrated fMRI Preprocessing Framework Using Extended Kalman Filter for Estimation of Slice-Wise Motion
Cited by: 4
Author(s): Basile Pinsard, Arnaud Boutin, Julien Doyon, Habib Benali
Software Mentions: 3
Published: over 6 years ago

10.1186/s13742-015-0045-x

Connectomics and new approaches for analyzing human brain functional connectivity
Cited by: 55
Author(s): R. Cameron Craddock, Rosalia L. Tungaraza, Michael P. Milham
Software Mentions: 3
Published: over 9 years ago

10.7554/eLife.22974

Visual field map clusters in human frontoparietal cortex
Cited by: 91
Author(s): Wayne E. Mackey, Jonathan Winawer, Clayton E. Curtis
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-020-79640-0

Adaptation to mis-pronounced speech: evidence for a prefrontal-cortex repair mechanism
Cited by: 6
Author(s): Esti Blanco-Elorrieta, Laura Gwilliams, Alec Marantz, Liina Pylkkänen
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0235879

Altered central pain processing in fibromyalgia—A multimodal neuroimaging case-control study using arterial spin labelling
Cited by: 4
Author(s): Monika Müller, Florian Wüthrich, Andrea Federspiel, Roland Wiest, Niklaus Egloff, Stephan Reichenbach, Aristomenis K. Exadaktylos, Peter Jüni, Michele Curatolo, Sebastian Walther
Software Mentions: 2
Published: over 3 years ago

10.3389/fnins.2019.00284

Brainstorm Pipeline Analysis of Resting-State Data From the Open MEG Archive
Cited by: 47
Author(s): Guiomar Niso, François Tadel, Elizabeth Bock, Martin Cousineau, A. Santos, Sylvain Baillet
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0104586

Graph-Based Inter-Subject Pattern Analysis of fMRI Data
Cited by: 29
Author(s): Sylvain Takerkart, Guillaume Auzias, Bertrand Thirion, Liva Ralaivola
Software Mentions: 2
Published: about 10 years ago

10.1007/s11682-016-9639-x

Increased brain connectivity and activation after cognitive rehabilitation in Parkinson’s disease: a randomized controlled trial
Cited by: 42
Author(s): María Díez‐Cirarda, Natalia Ojeda, Javier Peña, Alberto Cabrera‐Zubizarreta, Olaia Lucas‐Jiménez, Juan Carlos Gómez‐Esteban, Marian Gómez-Beldarrain, Naroa Ibarretxe‐Bilbao
Software Mentions: 1
Published: almost 8 years ago

10.3390/children6030043

Morphological and Advanced Imaging of Epilepsy: Beyond the Basics
Cited by: 9
Author(s): Aikaterini Fitsiori, Shivaprakash B Hiremath, José Boto, Valentina Garibotto, María Isabel Vargas
Software Mentions: 1
Published: over 5 years ago

10.1016/j.dib.2015.10.004

Benchmark data for sulcal pits extraction algorithms
Cited by: 2
Author(s): Guillaume Auzias, Lucile Brun, Christine Deruelle, Olivier Coulon
Software Mentions: 1
Published: almost 9 years ago

10.1016/j.ebiom.2017.11.005

Human Leukocyte Antigen (HLA) and Gulf War Illness (GWI): HLA-DRB1*13:02 Spares Subcortical Atrophy in Gulf War Veterans
Cited by: 23
Author(s): Lisa M. James, Peka Christova, Brian Engdahl, Scott M. Lewis, Adam Carpenter, Apostolos P. Georgopoulos
Software Mentions: 1
Published: almost 7 years ago

10.1016/j.ebiom.2018.02.005

Protective Effect of Human Leukocyte Antigen (HLA) Allele DRB1*13:02 on Age-Related Brain Gray Matter Volume Reduction in Healthy Women
Cited by: 17
Author(s): Lisa M. James, Peka Christova, Scott M. Lewis, Brian Engdahl, Angeliki Georgopoulos, Apostolos P. Georgopoulos
Software Mentions: 1
Published: over 6 years ago

10.1111/ejn.12888

Structural asymmetry of the insula is linked to the lateralization of gesture and language
Cited by: 45
Author(s): Szymon P. Biduła, Grzegorz Króliczak
Software Mentions: 1
Published: over 9 years ago

10.1093/braincomms/fcab164

Incorporation of quantitative MRI in a model to predict temporal lobe epilepsy surgery outcome
Cited by: 12
Author(s): Márcia Morita-Sherman, Manshi Li, Boney Joseph, Clarissa Lin Yasuda, Deborah Vegh, Brunno Machado de Campos, Marina K. M. Alvim, Shreya Louis, William Bingaman, Imad Najm, Stephen E. Jones, Xiaofeng Wang, Ingmar Blümcke, Benjamin H. Brinkmann, Gregory A. Worrell, Fernando Cendes, Lara Jehi
Software Mentions: 1
Published: over 3 years ago

10.3389/fnagi.2015.00021

Impaired emotional autobiographical memory associated with right amygdalar-hippocampal atrophy in Alzheimer’s disease patients
Cited by: 27
Author(s): Nathalie Philippi, Anne Botzung, Vincent Noblet, François Rousseau, Olivier Després, Benjamin Crétin, Stéphane Kremer, ‪Frederic Blanc‬, Lilianne Manning
Software Mentions: 1
Published: over 9 years ago

10.3389/fnagi.2015.00087

Anterior cingulate cortex mediates the relationship between O3PUFAs and executive functions in APOE e4 carriers
Cited by: 27
Author(s): Marta K. Zamroziewicz, Erick J. Paul, Rachael D. Rubin, Aron K. Barbey
Software Mentions: 1
Published: over 9 years ago

10.3389/fnana.2015.00086

Prevalence of increases in functional connectivity in visual, somatosensory and language areas in congenital blindness
Cited by: 19
Author(s): Lizette Heine, Mohamed Ali Bahri, Carlo Cavaliere, Andrea Soddu, Steven Laureys, Maurice Ptito, Ron Kupers
Software Mentions: 1
Published: about 9 years ago

10.1002/brb3.733

Feature selective temporal prediction of Alzheimer's disease progression using hippocampus surface morphometry
Cited by: 18
Author(s): Sinchai Tsao, Niharika Gajawelli, Jiayu Zhou, Jie Shi, Jieping Ye, Yalin Wang, Natasha Leporé
Software Mentions: 1
Published: over 7 years ago

10.1155/2015/160454

Advanced Morphological and Functional Magnetic Resonance Techniques in Glaucoma
Cited by: 10
Author(s): Rodolfo Mastropasqua, Luca Agnifili, Peter A. Mattei, Massimo Caulo, Vincenzo Fasanella, Riccardo Navarra, Leonardo Mastropasqua, Giorgio Marchini
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0075524

Early Exposure to Traumatic Stressors Impairs Emotional Brain Circuitry
Cited by: 28
Author(s): Mayuresh S. Korgaonkar, Cassandra Antees, Leanne M. Williams, Justine M. Gatt, Richard A. Bryant, Ronald A. Cohen, Robert Paul, Ruth O’Hara, Stuart M. Grieve
Software Mentions: 1
Published: almost 11 years ago

10.3389/fnins.2013.00260

Rapid and efficient localization of depth electrodes and cortical labeling using free and open source medical software in epilepsy surgery candidates
Cited by: 25
Author(s): Juan Pablo Princich, Demián Wassermann, Facundo Latini, Silvia Oddo, Alejandro Blenkmann, Gustavo Seifer, Sara Silvia Kochen
Software Mentions: 1
Published: over 11 years ago

10.1038/s41598-021-91872-2

Pre-motor versus motor cerebral cortex neuromodulation for chronic neuropathic pain
Cited by: 9
Author(s): Igor Lavrov, Timur Latypov, Elvira Mukhametova, Brian Nils Lundstrom, Paola Sandroni, Kendall Lee, Bryan T. Klassen, Matt Stead
Software Mentions: 1
Published: over 3 years ago

10.1038/tp.2017.74

Influences of prenatal and postnatal maternal depression on amygdala volume and microstructure in young children
Cited by: 139
Author(s): Wen Dj, Joann S. Poh, Ni Sn, Yap Seng Chong, H Chen, Kenneth Kwek, Lynette Pei‐Chi Shek, P. D. Gluckman, Fortier Mv, Meaney Mj, Qiu A
Software Mentions: 1
Published: over 7 years ago

10.1111/acel.12281

Alterations in brain leptin signalling in spite of unchanged <scp>CSF</scp> leptin levels in Alzheimer's disease
Cited by: 53
Author(s): Silvia Maioli, María F. Lodeiro, Paula Merino‐Serrais, Farshad Falahati, Wasim Khan, Elena Puerta, Alina Codita, Roberto Rimondini, Marı́a J. Ramı́rez, Andrew Simmons, Francisco J. Gil-Bea, Eric Westman, Ángel Cedazo-Mı́nguez
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12888-019-2247-8

Case report: a giant arachnoid cyst masking Alzheimer’s disease
Cited by: 6
Author(s): Anna-Sophia Wahl, Martin Löffler, Lucrezia Hausner, Michaela Ruttorf, Frauke Nees, Lutz Frölich
Software Mentions: 1
Published: about 5 years ago

10.1002/gps.4719

The influence of hippocampal atrophy on the cognitive phenotype of dementia with Lewy bodies
Cited by: 36
Author(s): Greg J. Elder, Karen Mactier, Sean J. Colloby, Rosie Watson, Andrew M. Blamire, John T. O’Brien, John‐Paul Taylor
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2377-13-68

COMBIT: protocol of a randomised comparison trial of COMbined modified constraint induced movement therapy and bimanual intensive training with distributed model of standard upper limb rehabilitation in children with congenital hemiplegia
Cited by: 38
Author(s): Roslyn N. Boyd, Jenny Ziviani, Leanne Sakzewski, Laura Miller, Joanne Bowden, Ross Cunnington, Robert S. Ware, Andrea Guzzetta, Richard Macdonell, Graeme D. Jackson, David F. Abbott, Stephen Rose
Software Mentions: 1
Published: about 11 years ago

10.1002/hbm.24909

Modulating the global orientation bias of the visual system changes population receptive field elongations
Cited by: 9
Author(s): Christian Merkel, Jens‐Max Hopf, Mircea Ariel Schoenfeld
Software Mentions: 1
Published: over 4 years ago

10.1109/TRPMS.2018.2881248

Enhancement of Partial Volume Correction in MR-Guided PET Image Reconstruction by Using MRI Voxel Sizes
Cited by: 11
Author(s): Martin A. Belzunce, Abolfazl Mehranian, Andrew J. Reader
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-017-10920-y

Altered topology of structural brain networks in patients with Gilles de la Tourette syndrome
Cited by: 9
Author(s): Eckhard Schlemm, Bastian Cheng, Felix Fischer, Claus C. Hilgetag, Christian Gerloff, Götz Thomalla
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pcbi.1002655

Human Motor Cortical Activity Is Selectively Phase-Entrained on Underlying Rhythms
Cited by: 186
Author(s): Kai J. Miller, Dora Hermes, Christopher J. Honey, Adam O. Hebb, Nick F. Ramsey, Robert T. Knight, Jeffrey G. Ojemann, Eberhard E. Fetz
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0083767

Altered Topological Organization of Cortical Network in Adolescent Girls with Idiopathic Scoliosis
Cited by: 14
Author(s): Defeng Wang, Lin Shi, Shangping Liu, Steve C.N. Hui, Yongjun Wang, Jack C. Y. Cheng, Winnie C.W. Chu
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0069294

New Developments and Applications of the MP2RAGE Sequence - Focusing the Contrast and High Spatial Resolution R1 Mapping
Cited by: 129
Author(s): José P. Marques, Rolf Gruetter
Software Mentions: 1
Published: about 11 years ago

10.1038/s41380-018-0023-7

Synaptic and transcriptionally downregulated genes are associated with cortical thickness differences in autism
Cited by: 118
Author(s): Rafael Romero-García, Varun Warrier, Edward T. Bullmore, Simon Baron‐Cohen, Richard A. I. Bethlehem
Software Mentions: 1
Published: over 6 years ago

10.1155/2015/963460

Different Temporal Patterns of Specific and General Autobiographical Memories across the Lifespan in Alzheimer’s Disease
Cited by: 8
Author(s): Nathalie Philippi, François Rousseau, Vincent Noblet, Anne Botzung, Olivier Després, Benjamin Crétin, Stéphane Kremer, ‪Frederic Blanc‬, Lilianne Manning
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0065584

Increased Prefrontal Cortical Thickness Is Associated with Enhanced Abilities to Regulate Emotions in PTSD-Free Women with Borderline Personality Disorder
Cited by: 25
Author(s): Hannah Bruehl, Sandra Preißler, Isabella Heuser, Hauke R. Heekeren, Stefan Röepke, Isabel Dziobek
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0127396

Cortical Thickness in Dementia with Lewy Bodies and Alzheimer's Disease: A Comparison of Prodromal and Dementia Stages
Cited by: 85
Author(s): ‪Frederic Blanc‬, Sean J. Colloby, Nathalie Philippi, Xavier de Pétigny, Barbara Jung, Catherine Demuynck, Clélie Phillipps, Pierre Anthony, Alan Thomas, Bing Fan, Julien Lamy, Catherine Milch, John T. O’Brien, Benjamin Crétin, Ian G. McKeith, Jean‐Paul Armspach, John‐Paul Taylor
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-018-36818-x

Hemispheric Regional Based Analysis of Diffusion Tensor Imaging and Diffusion Tensor Tractography in Patients with Temporal Lobe Epilepsy and Correlation with Patient outcomes
Cited by: 15
Author(s): Mahdi Alizadeh, Lauren Kozlowski, Jennifer Muller, Neha Ashraf, Shiva Shahrampour, Feroze B. Mohamed, Chengyuan Wu, Ashwini Sharan
Software Mentions: 1
Published: over 5 years ago

Projects: cran: freesurfer

Papers Mentioning freesurfer 50