cran: beeswarm | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0253950

Registered Report Protocol: Survey on attitudes and experiences regarding preregistration in psychological research
Cited by: 2
Author(s): Lisa Spitzer, Stefanie Mueller
Software Mentions: 21
Published: over 3 years ago

10.3389/fcell.2021.671736

Identification of a Novel Immune Landscape Signature for Predicting Prognosis and Response of Endometrial Carcinoma to Immunotherapy and Chemotherapy
Cited by: 6
Author(s): Jinhui Liu, Yichun Wang, Jie Mei, Song Nie, Yan Zhang
Software Mentions: 15
Published: over 3 years ago

10.3389/fcell.2020.00790

The Construction of Bone Metastasis-Specific Prognostic Model and Co-expressed Network of Alternative Splicing in Breast Cancer
Cited by: 4
Author(s): Runzhi Huang, Jian Guo, Penghui Yan, Suna Zhai, Peng Hu, Xiaolong Zhu, Jiayao Zhang, Yannan Qiao, Yu Zhang, Hui Liu, Ling Huang, Jie Zhang, Daoke Yang, Zongqiang Huang
Software Mentions: 15
Published: over 4 years ago

10.3389/fonc.2020.573295

Differential Expression Analysis Revealing CLCA1 to Be a Prognostic and Diagnostic Biomarker for Colorectal Cancer
Cited by: 11
Author(s): Fang-Ze Wei, Shiwen Mei, Zhijie Wang, Jianan Chen, Huan Shen, Fen Zhao, Juan Li, Zheng Liu, Qian Liu
Software Mentions: 14
Published: about 4 years ago

10.3389/fmolb.2021.611508

CXCL10 is a Tumor Microenvironment and Immune Infiltration Related Prognostic Biomarker in Pancreatic Adenocarcinoma
Cited by: 17
Author(s): Huimin Huang, Wangxiao Zhou, Renpin Chen, Bingfeng Xiang, Shipeng Zhou, Linhua Lan
Software Mentions: 11
Published: almost 4 years ago

10.3389/fimmu.2021.664845

CD2 Is a Novel Immune-Related Prognostic Biomarker of Invasive Breast Carcinoma That Modulates the Tumor Microenvironment
Cited by: 24
Author(s): Yanzhu Chen, Zhishang Meng, Lin Zhang, Feng Liu
Software Mentions: 11
Published: over 3 years ago

10.3389/fpsyg.2021.620307

No Evidence for a Decrease in Physical Activity Among Swiss Office Workers During COVID-19: A Longitudinal Study
Cited by: 19
Author(s): Andrea Martina Aegerter, Manja Deforth, Gisela Sjøgaard, Venerina Johnston, Thomas Volken, Hannu Luomajoki, Julia Dratva, Holger Dressel, Oliver Distler, Markus Melloh, Achim Elfering
Software Mentions: 10
Published: almost 4 years ago

10.3389/fmolb.2020.604252

Prognostic Model of Colorectal Cancer Constructed by Eight Immune-Related Genes
Cited by: 14
Author(s): Shuting Wen, Lina He, Zhuotai Zhong, Hong Mi, Fengbin Liu
Software Mentions: 9
Published: about 4 years ago

10.3389/fneur.2021.615790

Retinal Thickness Analysis in Progressive Multiple Sclerosis Patients Treated With Epigallocatechin Gallate: Optical Coherence Tomography Results From the SUPREMES Study
Cited by: 7
Author(s): Katharina Klumbies, Rebekka Rust, Jan Dörr, Frank Konietschke, Friedemann Paul, Judith Bellmann‐Strobl, Alexander U. Brandt, Hanna Zimmermann
Software Mentions: 8
Published: over 3 years ago

10.1016/j.molcel.2019.01.009

Unravelling Intratumoral Heterogeneity through High-Sensitivity Single-Cell Mutational Analysis and Parallel RNA Sequencing
Cited by: 195
Author(s): Alba Rodríguez-Meira, Gemma Buck, Sally-Ann Clark, Benjamin Povinelli, Verónica Alcolea, Eleni Louka, Simon J. McGowan, Angela Hamblin, Nikolaos Sousos, Nikolaos Barkas, Alice Giustacchini, Bethan Psaila, Sten Eirik W. Jacobsen, Supat Thongjuea, Adam J. Mead
Software Mentions: 8
Published: almost 6 years ago

10.1186/s12935-020-01560-w

Identification of an immune gene signature for predicting the prognosis of patients with uterine corpus endometrial carcinoma
Cited by: 19
Author(s): Cankun Zhou, Chaomei Li, Fangli Yan, Yuhua Zheng
Software Mentions: 8
Published: about 4 years ago

10.1002/1878-0261.12139

Transcription instability in high-risk neuroblastoma is associated with a global perturbation of chromatin domains
Cited by: 4
Author(s): Carlo Zanon, Gian Paolo Tonini
Software Mentions: 8
Published: about 7 years ago

10.1038/srep46658

Metabolism dysregulation induces a specific lipid signature of nonalcoholic steatohepatitis in patients
Cited by: 148
Author(s): Franck Chiappini, Audrey Coilly, Hanane Kadar, Philippe Gual, Albert Tran, Christophe Desterke, Didier Samuel, Jean‐Charles Duclos‐Vallée, David Touboul, Justine Bertrand‐Michel, Alain Brunelle, Catherine Guettier, François Le Naour
Software Mentions: 8
Published: over 7 years ago

10.3389/fmolb.2021.651525

Potential Role of NEU1 in Hepatocellular Carcinoma: A Study Based on Comprehensive Bioinformatical Analysis
Cited by: 5
Author(s): Zhulin Wu, Li He, Lina Yang, Xuehong Fang, Lisheng Peng
Software Mentions: 7
Published: over 3 years ago

10.3389/fmolb.2021.656145

Identification and Exploration of Novel Macrophage M2-Related Biomarkers and Potential Therapeutic Agents in Endometriosis
Cited by: 10
Author(s): Zhongqi Cui, Ramesh Singh Bhandari, Lei Qin, Mingzhi Lu, Lei Zhang, Mengmei Zhang, Fenyong Sun, Lijin Feng, Shasha Zhao
Software Mentions: 7
Published: over 3 years ago

10.7717/peerj.11430

Identification of Vitamin D-related gene signature to predict colorectal cancer prognosis
Cited by: 1
Author(s): Luping Bu, Fengxing Huang, Mengting Li, Yanan Peng, Haizhou Wang, Meng Zhang, Linfa Peng, Lan Liu, Qiu Zhao
Software Mentions: 7
Published: over 3 years ago

10.1186/s13568-016-0191-2

Automation of antimicrobial activity screening
Cited by: 8
Author(s): Samuel P. Forry, Meggan C. Madonna, Daneli López-Pérez, Nancy J. Lin, Madeleine D. Pasco
Software Mentions: 6
Published: almost 9 years ago

10.1371/journal.pone.0099926

Insights from Computational Modeling in Inflammation and Acute Rejection in Limb Transplantation
Cited by: 23
Author(s): Dolores Wolfram, Ravi Starzl, Hubert Hackl, Derek Barclay, Theresa Hautz, Bettina Zelger, Gerald Brandacher, W. P. Andrew Lee, Nadine Eberhart, Yoram Vodovotz, Johann Pratschke, Gerhard Pierer, Stefan Schneeberger
Software Mentions: 6
Published: over 10 years ago

10.1371/journal.pone.0132932

Spatiotemporal Patterns of Tumor Occurrence in Children with Intraocular Retinoblastoma
Cited by: 13
Author(s): Benjamin King, Carlos Parra, Yimei Li, Kathleen J. Helton, Ibrahim Qaddoumi, Matthew W. Wilson, Robert J. Ogg
Software Mentions: 6
Published: over 9 years ago

10.3389/fmicb.2021.701796

L-Canavanine, a Root Exudate From Hairy Vetch (Vicia villosa) Drastically Affecting the Soil Microbial Community and Metabolite Pathways
Cited by: 7
Author(s): Hossein Mardani-Korrani, Masaru Nakayasu, Shinichi Yamazaki, Yosuke Aoki, Rumi Kaida, Takashi Motobayashi, Masaru Kobayashi, Naoko Ohkama‐Ohtsu, Yosei Oikawa, Akifumi Sugiyama, Yoshiharu Fujii
Software Mentions: 6
Published: about 3 years ago

10.1038/s41598-020-58493-7

VGLL3 is a prognostic biomarker and correlated with clinical pathologic features and immune infiltrates in stomach adenocarcinoma
Cited by: 13
Author(s): Lihua Zhang, Longhai Li, Yong Mao, Hua Dong
Software Mentions: 6
Published: almost 5 years ago

10.1038/s41598-021-87384-8

Field multi-omics analysis reveals a close association between bacterial communities and mineral properties in the soybean rhizosphere
Cited by: 11
Author(s): Shinichi Yamazaki, Hossein Mardani-Korrani, Rumi Kaida, Kumiko Ochiai, Masaru Kobayashi, Atsushi J. Nagano, Yoshiharu Fujii, Akifumi Sugiyama, Yosuke Aoki
Software Mentions: 6
Published: over 3 years ago

10.1264/jsme2.ME17160

Chitin Increases Mycobacterium ulcerans Growth in Acidic Environments
Cited by: 6
Author(s): Daniel Sanhueza, Christine Chevillon, Nicolas Bouzinbi, Sylvain Godreuil, Jean‐François Guégan
Software Mentions: 5
Published: almost 7 years ago

10.1186/s13046-020-01823-4

The EGFR-HSF1 axis accelerates the tumorigenesis of pancreatic cancer
Cited by: 9
Author(s): Weikun Qian, Ke Chen, Tao Qin, Ying Xiao, Jie Li, Yangyang Yue, Cancan Zhou, Jiguang Ma, Wanxing Duan, Jing Liu, Liang Han, Li Li, Xin Shen, Zheng Wu, Qingyong Ma, Zheng Wang
Software Mentions: 5
Published: almost 4 years ago

10.3390/diagnostics11030476

Association of Circulating miRNA Expression with Preeclampsia, Its Onset, and Severity
Cited by: 8
Author(s): Zuzana Kolková, Veronika Holubeková, Marián Grendár, Marcela Ňachajová, Pavol Žúbor, Terézia Pribulová, Dušan Loderer, Imrich Zigo, Kamil Biringer, Andrea Horňáková
Software Mentions: 5
Published: almost 4 years ago

10.1186/s12864-017-4100-0

Comparative transcriptomics of female and male gametocytes in Plasmodium berghei and the evolution of sex in alveolates
Cited by: 61
Author(s): Lee M. Yeoh, Christopher D. Goodman, Vanessa Mollard, Geoffrey I. McFadden, Stuart A. Ralph
Software Mentions: 5
Published: over 7 years ago

10.1038/s41598-020-76991-6

Salivary microbiome composition changes after bariatric surgery
Cited by: 11
Author(s): Mária Džunková, Róbert Lipták, Barbora Vlková, Roman Gardlík, M Cierny, Andrés Moya, Peter Celec
Software Mentions: 5
Published: about 4 years ago

10.2196/27633

Web-Based Survival Analysis Tool Tailored for Medical Research (KMplot): Development and Implementation
Cited by: 716
Author(s): András Lánczky, Balázs Győrffy
Software Mentions: 5
Published: over 3 years ago

10.3389/fncel.2018.00106

Automated Morphological Analysis of Microglia After Stroke
Cited by: 155
Author(s): Steffanie Heindl, Benno Gesierich, Corinne Benakis, Gemma Llovera, Marco Duering, Arthur Liesz
Software Mentions: 5
Published: over 6 years ago

10.18632/aging.102841

Identification of biomarkers related to CD8+ T cell infiltration with gene co-expression network in clear cell renal cell carcinoma
Cited by: 47
Author(s): Jiaxing Lin, Meng Yu, Xiao Xu, Yutao Wang, Haotian Xing, Jing An, Jieping Yang, Chaozhi Tang, Dan Sun, Yuyan Zhu
Software Mentions: 5
Published: almost 5 years ago

10.1038/srep29971

The impact of preconceptional obesity on trajectories of maternal lipids during gestation
Cited by: 26
Author(s): Latife Bozkurt, Christian Göbl, Anna-Theresa Hörmayer, Anton Luger, Giovanni Pacini, Alexandra Kautzky‐Willer
Software Mentions: 5
Published: over 8 years ago

10.18632/aging.202281

Integrated bioinformatic analysis of RNA binding proteins in hepatocellular carcinoma
Cited by: 16
Author(s): Ling Wang, Zhen Zhang, Yuan Li, Yanyan Wan, Baocai Xing
Software Mentions: 5
Published: about 4 years ago

10.3390/ijms21197288

Pathway Analysis of Selected Circulating miRNAs in Plasma of Breast Cancer Patients: A Preliminary Study
Cited by: 13
Author(s): Veronika Holubeková, Zuzana Kolková, Marián Grendár, Dušan Braný, Dana Dvorská, Igor Stastny, Marianna Jagelková, Katarína Zelinová, Marek Samec, Alena Líšková, Zuzana Laučeková, Erik Kúdela, Martina Bobrovská, Michal Kalman, Pavol Žúbor, Zuzana Daňková
Software Mentions: 5
Published: about 4 years ago

10.3389/fneur.2020.00316

Observational Study of Pulse Transit Time in Children With Sleep Disordered Breathing
Cited by: 1
Author(s): Michael Yanney, Andrew Prayle, Nicola J. Rowbotham, Miguel Kurc, Sean Tilbrook, Nabeel Ali
Software Mentions: 4
Published: over 4 years ago

10.1080/15592294.2016.1182272

Bisphenol A causes reproductive toxicity, decreases dnmt1 transcription, and reduces global DNA methylation in breeding zebrafish (Danio rerio)
Cited by: 138
Author(s): Lauren V. Laing, Joana Viana, Emma Dempster, Maciej Trznadel, L. A. Trunkfield, Tamsyn M. Uren Webster, Ronny van Aerle, Gregory C. Paull, Robert J. Wilson, Jonathan Mill, Eduarda M. Santos
Software Mentions: 4
Published: over 8 years ago

10.12688/f1000research.4856.2

Thrombocytosis portends adverse prognostic significance in patients with stage II colorectal carcinoma
Cited by: 12
Author(s): Tianhua Guo, Marcin Krzystanek, Zoltán Szállási, A Szállaśi
Software Mentions: 4
Published: about 10 years ago

10.1042/BSR20201491

Exploration of immune-related genes in high and low tumor mutation burden groups of chromophobe renal cell carcinoma
Cited by: 9
Author(s): Lei Li, Xi Chen, Lu Hao, Qiuyan Chen, Haosheng Liu, Qing Zhou
Software Mentions: 4
Published: over 4 years ago

10.18632/aging.203049

Construction of a novel mRNA-miRNA-lncRNA network and identification of potential regulatory axis associated with prognosis in colorectal cancer liver metastases
Cited by: 8
Author(s): Lu Chen, Xiaochun Luo, Xing Cheng, Yonghuan Mao, Yuting Xu, Wenjie Gao, Wulin Wang, Tian Zhan, Guoguang Wang, Zhengxia Liu, Chang-Feng Yu
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0129350

Multiplexing of ChIP-Seq Samples in an Optimized Experimental Condition Has Minimal Impact on Peak Detection
Cited by: 0
Author(s): Thadeous J. Kacmarczyk, Caitlin Bourque, Xihui Zhang, Yanwen Jiang, Yariv Houvras, Alicia Alonso, Doron Betel
Software Mentions: 4
Published: over 9 years ago

10.3390/ijerph18137158

A Possible Preventive Role of Physically Active Lifestyle during the SARS-CoV-2 Pandemic; Might Regular Cold-Water Swimming and Exercise Reduce the Symptom Severity of COVID-19?
Cited by: 3
Author(s): Viktor Bielik, Marián Grendár, Martin Kolísek
Software Mentions: 3
Published: over 3 years ago

10.1186/s40168-016-0182-1

The microbiota in bronchoalveolar lavage from young children with chronic lung disease includes taxa present in both the oropharynx and nasopharynx
Cited by: 139
Author(s): Robyn L. Marsh, Mirjam Kaestli, Anne B. Chang, Michael J. Binks, Charles E. Pope, Lucas R. Hoffman, Heidi Smith‐Vaughan
Software Mentions: 3
Published: over 8 years ago

10.3390/jcm10112297

Complex Interplay of Genes Underlies Invasiveness in Fibrosarcoma Progression Model
Cited by: 0
Author(s): Michaela Kripnerová, Hamendra Singh Parmar, Jiří Šána, Alena Kopková, Lenka Radová, Sieghart Sopper, Krzysztof Biernacki, Jan Jedlička, M Kohoutová, Jitka Kuncová, Jan Peychl, Emil Rudolf, Miroslav Červinka, Zbyněk Houdek, Pavel Dvořák, Kateřina Houfková, Martin Pešta, Zdeněk Tůma, M. Dolejšová, Filip Tichánek, Václav Babuška, Martin Leba, Ondřej Slabý, Jiřı́ Hatina
Software Mentions: 3
Published: over 3 years ago

10.3389/fimmu.2017.00221

Computational Model Reveals Limited Correlation between Germinal Center B-Cell Subclone Abundancy and Affinity: Implications for Repertoire Sequencing
Cited by: 14
Author(s): Polina Reshetova, Barbera D. C. van Schaik, Paul L. Klarenbeek, Marieke E. Doorenspleet, Rebecca E. E. Esveldt, Paul‐Peter Tak, Jeroen E. J. Guikema, Niek de Vries, Antoine H. C. van Kampen
Software Mentions: 3
Published: almost 8 years ago

10.7717/peerj.450

Local norms of cheating and the cultural evolution of crime and punishment: a study of two urban neighborhoods
Cited by: 22
Author(s): Kari Britt Schroeder, Gillian Pepper, Daniel Nettle
Software Mentions: 3
Published: over 10 years ago

10.18632/oncotarget.7451

Ioncopy: a novel method for calling copy number alterations in amplicon sequencing data including significance assessment
Cited by: 21
Author(s): Jan Budczies, Nicole Pfarr, Albrecht Stenzinger, Denise Treue, Volker Endris, Fakher Ismaéel, Nikola Bangemann, Jens-Uwe Blohmer, Manfred Dietel, Sibylle Loibl, Frederick Klauschen, Wilko Weichert, Carsten Denkert
Software Mentions: 3
Published: almost 9 years ago

10.1186/s12885-020-07529-2

Increased E2F2 predicts poor prognosis in patients with HCC based on TCGA data
Cited by: 12
Author(s): Zhili Zeng, Zebiao Cao, Ying Tang
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pgen.1009674

An auxin signaling network translates low-sugar-state input into compensated cell enlargement in the fugu5 cotyledon
Cited by: 11
Author(s): Hiromitsu Tabeta, S. Watanabe, Koichiro Fukuda, Shizuka Gunji, Mariko Asaoka, Masami Yokota Hirai, Mitsunori Seo, Hirokazu Tsukaya, Ali Ferjani
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0150852

Spontaneous 8bp Deletion in Nbeal2 Recapitulates the Gray Platelet Syndrome in Mice
Cited by: 12
Author(s): Kärt Tomberg, Rami Khoriaty, Randal J. Westrick, Heather Fairfield, Laura G. Reinholdt, Gary Brodsky, Pavel Davizon‐Castillo, David Ginsburg, Jorge Di Paola
Software Mentions: 2
Published: almost 9 years ago

10.1093/femsec/fiw096

Formation of lipid bodies and changes in fatty acid composition upon pre-akinete formation in Arctic and AntarcticZygnema(Zygnematophyceae, Streptophyta) strains
Cited by: 54
Author(s): Martina Pichrtová, Erwann Arc, Wolfgang Stöggl, Ilse Kranner, Tomáš Hájek, Hubert Hackl, Andreas Holzinger
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pbio.2001867

Integrated time-lapse and single-cell transcription studies highlight the variable and dynamic nature of human hematopoietic cell fate commitment
Cited by: 48
Author(s): Alice Moussy, Jérémie Cosette, Romuald Parmentier, Cindy da Silva, Guillaume Corre, Richard Angélique, Olivier Gandrillon, Daniel Stockholm, Andràs Páldi
Software Mentions: 2
Published: over 7 years ago

10.1242/bio.030015

Distribution of PEG-coated hollow polyelectrolyte microcapsules after introduction into the circulatory system and muscles of zebrafish
Cited by: 8
Author(s): Ekaterina Borvinskaya, Anton Gurkov, Ekaterina Shchapova, Boris Baduev, Igor Meglinski, Maxim A. Timofeyev
Software Mentions: 1
Published: almost 7 years ago

10.3389/fimmu.2018.00428

Autoantibodies in Serum of Systemic Scleroderma Patients: Peptide-Based Epitope Mapping Indicates Increased Binding to Cytoplasmic Domains of CXCR3
Cited by: 13
Author(s): Andreas Recke, Ann-Katrin Regensburger, Florian Weigold, Antje Müller, Harald Heidecke, G Marschner, Christoph M Hammers, Ralf J. Ludwig, Gabriela Riemekasten
Software Mentions: 1
Published: almost 7 years ago

Projects: cran: beeswarm

Papers Mentioning beeswarm 52