cran: CP | Projects | Ecosyste.ms: Papers

10.1186/s12859-017-1539-6

Model based heritability scores for high-throughput sequencing data
Cited by: 9
Author(s): Pratyaydipta Rudra, Wenmei Shi, Brian Vestal, Pamela Russell, Aaron Odell, Robin D. Dowell, Richard A. Radcliffe, Laura Saba, Katerina Kechris
Software Mentions: 10
Published: over 7 years ago

10.1371/journal.pone.0165545

omicsNPC: Applying the Non-Parametric Combination Methodology to the Integrative Analysis of Heterogeneous Omics Data
Cited by: 11
Author(s): Nestoras Karathanasis, Ioannis Tsamardinos, Vincenzo Lagani
Software Mentions: 9
Published: about 8 years ago

10.1093/bioinformatics/btz855

Improved linking of motifs to their TFs using domain information
Cited by: 1
Author(s): Nina Baumgarten, Florian Schmidt, Marcel H. Schulz
Software Mentions: 6
Published: about 5 years ago

10.1186/1471-2172-9-8

Evaluation of MHC class I peptide binding prediction servers: Applications for vaccine research
Cited by: 219
Author(s): Honghuang Lin, Surajit Ray, Songsak Tongchusak, Ellis L. Reinherz, Vladimir Brusic
Software Mentions: 5
Published: over 16 years ago

10.1186/s13321-018-0325-4

Large scale comparison of QSAR and conformal prediction methods and their applications in drug discovery
Cited by: 91
Author(s): Nicolas Bosc, Francis Atkinson, Eloy Félix, Anna Gaulton, Anne Hersey, Andrew R. Leach
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pcbi.1003216

Characterizing Changes in the Rate of Protein-Protein Dissociation upon Interface Mutation Using Hotspot Energy and Organization
Cited by: 29
Author(s): Rudi Agius, Mieczyslaw Torchala, Iain H. Moal, Juan Fernández‐Recio, Paul A. Bates
Software Mentions: 3
Published: about 11 years ago

10.1371/journal.pone.0237972

Interactive machine learning for fast and robust cell profiling
Cited by: 1
Author(s): Lisa Laux, Marie F.A. Cutiongco, Nikolaj Gadegaard, Bjørn Sand Jensen
Software Mentions: 3
Published: about 4 years ago

10.1186/s12859-017-1511-5

A comparison of reference-based algorithms for correcting cell-type heterogeneity in Epigenome-Wide Association Studies
Cited by: 261
Author(s): Andrew E. Teschendorff, Charles E. Breeze, Shiqing Zheng, Stephan Beck
Software Mentions: 3
Published: almost 8 years ago

10.1186/1471-2105-14-317

Automated analysis of phylogenetic clusters
Cited by: 280
Author(s): Manon Ragonnet‐Cronin, Emma B. Hodcroft, Stephane Hué, Esther Fearnhill, Valérie Delpech, Andrew J. Leigh Brown, Samantha Lycett
Software Mentions: 3
Published: about 11 years ago

10.1371/journal.pone.0255026

Postgraduate pharmacist development- an evaluation of Jordanian pharmacist experiences to inform and shape an evidence-based professional development policy
Cited by: 0
Author(s): Mohanad Odeh, Enas Alkhader, Alice McCloskey, Rabia Jamil Aljabra, Mohammad Ghassan Al-Sharayri, Faisal Al-Noimi, Majid Alarmooti, Mutazbellah Alzu’bi
Software Mentions: 2
Published: over 3 years ago

10.3389/fnins.2021.652715

Early-Stage Repetitive Transcranial Magnetic Stimulation Altered Posterior–Anterior Cerebrum Effective Connectivity in Methylazoxymethanol Acetate Rats
Cited by: 3
Author(s): Haipeng Guo, Yao Xiao, Dongxue Sun, Jingyu Yang, Jie Wang, Huaning Wang, Chunyu Pan, Chao Li, Pengfei Zhao, Yanbo Zhang, Jinfeng Wu, Xizhe Zhang, Fei Wang
Software Mentions: 2
Published: over 3 years ago

10.3390/jpm11060515

Accurate Segmentation of Nuclear Regions with Multi-Organ Histopathology Images Using Artificial Intelligence for Cancer Diagnosis in Personalized Medicine
Cited by: 15
Author(s): Tahir Mahmood, Muhammad Owais, Kyoung Jun Noh, Hyo Sik Yoon, Ja Hyung Koo, Adnan Haider, Haseeb Sultan, Kang Ryoung Park
Software Mentions: 2
Published: over 3 years ago

10.18632/aging.202403

Tsukushi is a novel prognostic biomarker and correlates with tumor-infiltrating B cells in non-small cell lung cancer
Cited by: 8
Author(s): Hao Huang, Zhijie Ding, Jinming Fu, Linjing Zhao, Dapeng Li, Hongru Sun, Xinyan Li, Jing Xu, Tian Tian, Lei Zhang, Ying Liu, Yuanyuan Zhang, Yong Zhao
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0217346

TISMorph: A tool to quantify texture, irregularity and spreading of single cells
Cited by: 17
Author(s): Elaheh Alizadeh, Wenlong Xu, Jordan Castle, Jacqueline Foss, Ashok Prasad
Software Mentions: 2
Published: over 5 years ago

10.1177/1087057116652064

A Novel Automated High-Content Analysis Workflow Capturing Cell Population Dynamics from Induced Pluripotent Stem Cell Live Imaging Data
Cited by: 16
Author(s): Maximilian Kerz, Amos Folarin, Ruta Meleckyte, Fiona M. Watt, Richard Dobson, Davide Danovi
Software Mentions: 2
Published: about 8 years ago

10.3897/BDJ.6.e28073

A story of data won, data lost and data re-found: the realities of ecological data preservation
Cited by: 10
Author(s): Alison Specht, Matthew P. Bolton, Bryn Kingsford, R. L. Specht, Lee Belbin
Software Mentions: 2
Published: about 6 years ago

10.1038/srep31983

Rational improvement of gp41-targeting HIV-1 fusion inhibitors: an innovatively designed Ile-Asp-Leu tail with alternative conformations
Cited by: 12
Author(s): Yun Zhu, Shan Su, Lili Qin, Qian Wang, Lei Shi, Zhenxuan Ma, Jianchao Tang, Shibo Jiang, Lu Lu, Sheng Ye, Rongguang Zhang
Software Mentions: 2
Published: about 8 years ago

10.1002/chem.202002838

Principles and Applications of Miniaturized Near‐Infrared (NIR) Spectrometers
Cited by: 143
Author(s): Krzysztof B. Beć, Justyna Grabska, Christian W. Huck
Software Mentions: 2
Published: about 4 years ago

10.3390/ijerph16071138

Leveraging Data Quality to Better Prepare for Process Mining: An Approach Illustrated Through Analysing Road Trauma Pre-Hospital Retrieval and Transport Processes in Queensland
Cited by: 25
Author(s): Robert Andrews, Moe Thandar Wynn, Natalie Bradford, Arthur H. M. ter Hofstede, Emma Bosley, Mark Elcock, Stephen Rashford
Software Mentions: 2
Published: over 5 years ago

10.1155/2019/7232781

Automated and Reproducible Detection of Vascular Endothelial Growth Factor (VEGF) in Renal Tissue Sections
Cited by: 1
Author(s): Nayana Damiani Macedo, Aline Rodrigues Buzin, Isabela Bastos de Araujo, Breno Valentim Nogueira, Tadeu Uggere de Andrade, Denise Coutinho Endringer, Dominik Lenz
Software Mentions: 2
Published: over 5 years ago

10.1016/j.jmb.2018.10.011

Investigating the Effect of Chain Connectivity on the Folding of a Beta-Sheet Protein On and Off the Ribosome
Cited by: 20
Author(s): Andrew P. Marsden, Jeffrey J. Hollins, C.H. O'Neill, Pavel Ryzhov, Sally Higson, Carolina Mendonca, Tristan O. C. Kwan, Lee Gyan Kwa, Annette Steward, Jane Clarke
Software Mentions: 2
Published: almost 6 years ago

10.1186/s13321-021-00551-x

A hybrid framework for improving uncertainty quantification in deep learning-based QSAR regression modeling
Cited by: 15
Author(s): Dingyan Wang, Jie Yu, Lifan Chen, Xutong Li, Hualiang Jiang, Kaixian Chen, Mingyue Zheng, Xiaomin Luo
Software Mentions: 1
Published: about 3 years ago

10.1038/srep30470

Intensified Springtime Deep Convection over the South China Sea and the Philippine Sea Dries Southern China
Cited by: 28
Author(s): Zhenning Li, Song Yang, Bian He, Chundi Hu
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-021-99285-x

Simultaneous transcranial and transcutaneous spinal direct current stimulation to enhance athletic performance outcome in experienced boxers
Cited by: 19
Author(s): Ali‐Mohammad Kamali, Milad Kazemiha, Behnam Keshtkarhesamabadi, Mohsan Daneshvari, Asadollah Zarifkar, Prąsun Chakrabarti, Babak Kateb, Mohammad Nami
Software Mentions: 1
Published: about 3 years ago

10.3390/s19204368

Distributed Acoustic Sensing Using Chirped-Pulse Phase-Sensitive OTDR Technology
Cited by: 68
Author(s): María R. Fernández‐Ruiz, Luís Costa, Hugo F. Martins
Software Mentions: 1
Published: about 5 years ago

10.3390/s20030908

Long-Range Distributed Solar Irradiance Sensing Using Optical Fibers
Cited by: 4
Author(s): Regina Magalhães, Luís Costa, Sonia Martín‐López, Miguel Gonzalez-Herraez, Alejandro F. Braña, Hugo F. Martins
Software Mentions: 1
Published: almost 5 years ago

10.1155/2014/204386

Factors Related to Psychosocial Quality of Life for Children with Cerebral Palsy
Cited by: 25
Author(s): D. W. Tessier, Jennifer L Hefner, Amy Newmeyer
Software Mentions: 1
Published: almost 11 years ago

10.3390/ijerph16112035

Analyzing Municipal Solid Waste Treatment Scenarios in Rapidly Urbanizing Cities in Developing Countries: The Case of Dar es Salaam, Tanzania
Cited by: 23
Author(s): Emmanuel Kazuva, Jiquan Zhang
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms20112848

Detecting Brachypodium distachyon Chromosomes Bd4 and Bd5 in MH- and X-Ray-Induced Micronuclei Using mcFISH
Cited by: 6
Author(s): Arita Kuś, Joanna Szymanowska-Pułka, Jolanta Kwaśniewska, Robert Hasterok
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms21010056

Self-Assembly in Ganglioside‒Phospholipid Systems: The Co-Existence of Vesicles, Micelles, and Discs
Cited by: 12
Author(s): Enamul Haque Mojumdar, Carl Grey, Emma Sparr
Software Mentions: 1
Published: almost 5 years ago

10.1093/jrr/rrv105

A treatment-planning comparison of three beam arrangement strategies for stereotactic body radiation therapy for centrally located lung tumors using volumetric-modulated arc therapy
Cited by: 6
Author(s): Kentaro Ishii, Wataru Okada, Ryo Ogino, Kazuki Kubo, Shun Kishimoto, Ryuta Nakahara, Ryu Kawamorita, Yoshie Ishii, Takuhito Tada, Toshifumi Nakajima
Software Mentions: 1
Published: over 8 years ago

10.1186/s42490-019-0026-8

An automatic nuclei segmentation method based on deep convolutional neural networks for histopathology images
Cited by: 49
Author(s): Hwejin Jung, Bilal Ahmed Lodhi, Jaewoo Kang
Software Mentions: 1
Published: about 5 years ago

10.1186/s12916-018-1117-4

Fast and expensive (PCR) or cheap and slow (culture)? A mathematical modelling study to explore screening for carbapenem resistance in UK hospitals
Cited by: 18
Author(s): Gwenan M. Knight, Eleonora Dyakova, Siddharth Mookerjee, Frances Davies, Eimear Brannigan, Jonathan A. Otter, Alison Holmes
Software Mentions: 1
Published: over 6 years ago

10.1186/s12911-016-0350-z

Development and implementation of an online clinical pathway for adult chronic kidney disease in primary care: a mixed methods study
Cited by: 17
Author(s): Maoliosa Donald, Kerry McBrien, Wes Jackson, Braden Manns, Marcello Tonelli, Kathryn King‐Shier, Kailash Jindal, Richard Lewanczuk, Nairne Scott-Douglas, Theodore E. D. Braun, Sharon E. Straus, Christopher Naugler, Meghan J. Elliott, Min Jun, Brenda R. Hemmelgarn
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2202-14-108

Glutaminyl cyclase-mediated toxicity of pyroglutamate-beta amyloid induces striatal neurodegeneration
Cited by: 23
Author(s): Andreas Becker, Stephanie Kohlmann, Anca Alexandru, Wolfgang Jagla, Fabio Canneva, Christoph Bäuscher, Holger Cynis, Reinhard Sedlmeier, Sigrid Graubner, Stephan Schilling, Hans‐Ulrich Demuth, Stephan von Hörsten
Software Mentions: 1
Published: about 11 years ago

10.1186/s12884-015-0785-8

Magnesium sulphate for fetal neuroprotection: benefits and challenges of a systematic knowledge translation project in Canada
Cited by: 5
Author(s): Katherine C. Teela, Dane A. De Silva, Katie Chapman, Anne Synnes, Diane Sawchuck, Melanie Basso, Robert Liston, Peter von Dadelszen, Laura A. Magee
Software Mentions: 1
Published: almost 9 years ago

10.1136/bmjopen-2018-028505

Randomised controlled trial of a novel online cognitive rehabilitation programme for children with cerebral palsy: a study protocol
Cited by: 6
Author(s): Jane Wotherspoon, Koa Whittingham, Roslyn N. Boyd, Jeanie Sheffield
Software Mentions: 1
Published: over 5 years ago

10.1186/s12936-018-2516-x

Field assessment of potential sugar feeding stations for disseminating bacteria in a paratransgenic approach to control malaria
Cited by: 14
Author(s): Etienne Bilgo, Amélie Vantaux, Antoine Sanon, Seni Ilboudo, Roch K. Dabiré, Marcelo Jacobs‐Lorena, Abdoulaye Diabaté
Software Mentions: 1
Published: about 6 years ago

10.1007/s11120-017-0412-9

In vivo NMR as a tool for probing molecular structure and dynamics in intact Chlamydomonas reinhardtii cells
Cited by: 11
Author(s): Fatemeh Azadi-Chegeni, Christo Schiphorst, Anjali Pandit
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0122848

Multicolor Whole-Cell Bacterial Sensing Using a Synchronous Fluorescence Spectroscopy-Based Approach
Cited by: 10
Author(s): Damien Parrello, Christian Mustin, David Brie, Sébastian Miron, Patrick Billard
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0154486

I Hear You Eat and Speak: Automatic Recognition of Eating Condition and Food Type, Use-Cases, and Impact on ASR Performance
Cited by: 30
Author(s): Simone Hantke, Felix Weninger, Richard Kurle, Fabien Ringeval, Anton Batliner, Amr El-Desoky Mousa, Björn Schuller
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0222680

Quandong stones: A specialised Australian nut-cracking tool
Cited by: 10
Author(s): Colin Pardoe, Richard Fullagar, Elspeth Hayes
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0187237

How does the ball influence the performance of change of direction and sprint tests in para-footballers with brain impairments? Implications for evidence-based classification in CP-Football
Cited by: 25
Author(s): Raúl Reina, José Manuel Sarabia, Carla Caballero, Javier Yanci
Software Mentions: 1
Published: about 7 years ago

10.1002/ccr3.2261

Impellent impeller—Switching intra‐aortic balloon pump to IMPELLA‐CP after ST‐segment elevation myocardial infarction and refractory cardiogenic shock
Cited by: 1
Author(s): Marco Contarini, Francesco Costa, Maria Victoria Garcia Ruiz, Renato Francesco Maria Scalise, Giovanni De Velli, Paola Murè, Paolo Mazzone, Giorgio Sacchetta, Giuseppe Andò
Software Mentions: 1
Published: over 5 years ago

10.1007/s00590-015-1695-1

The innovative viscoelastic CP ESP cervical disk prosthesis with six degrees of freedom: biomechanical concepts, development program and preliminary clinical experience
Cited by: 19
Author(s): Jean-Yves Lazennec, Alain Aaron, Olivier Ricart, Jean Patrick Rakover
Software Mentions: 1
Published: about 9 years ago

10.3389/fimmu.2020.00034

Phenotypic and Transcriptomic Lymphocytes Changes in Allograft Recipients After Intravenous Immunoglobulin Therapy in Kidney Transplant Recipients
Cited by: 0
Author(s): C. Pilon, Jérémy Bigot, Cynthia Grondin, Allan Thiolat, Philippe Lang, José L. Cohen, Philippe Grimbert, Marie Matignon
Software Mentions: 1
Published: almost 5 years ago

10.3389/fimmu.2017.00100

A Chimera Containing CD4+ and CD8+ T-Cell Epitopes of the Leishmania donovani Nucleoside Hydrolase (NH36) Optimizes Cross-Protection against Leishmania amazonesis Infection
Cited by: 26
Author(s): Marcus Vinícius Alves-Silva, Dirlei Nico, Alexandre Morrot, Marcos Palatnik, Clarisa B. Palatnik-de-Sousa
Software Mentions: 1
Published: over 7 years ago

10.3389/fpsyg.2021.619771

New Item Selection Method Accommodating Practical Constraints in Cognitive Diagnostic Computerized Adaptive Testing: Maximum Deviation and Maximum Limitation Global Discrimination Indexes
Cited by: 0
Author(s): Junjie Li, Liang Ma, Pingfei Zeng, Chunhua Kang
Software Mentions: 1
Published: over 3 years ago

10.1186/1748-5908-4-27

Use of communities of practice in business and health care sectors: A systematic review
Cited by: 247
Author(s): Linda Li, Jeremy Grimshaw, Charlotte Nielsen, Maria Judd, Peter C. Coyte, Ian D. Graham
Software Mentions: 1
Published: over 15 years ago

10.1186/s13012-017-0702-9

MAGnesium sulphate for fetal neuroprotection to prevent Cerebral Palsy (MAG-CP)—implementation of a national guideline in Canada
Cited by: 28
Author(s): Dane A. De Silva, Anne Synnes, Peter von Dadelszen, Tang Lee, Jeffrey Bone, Laura A. Magee
Software Mentions: 1
Published: almost 7 years ago

10.1002/acm2.12164

Multi‐isocentric 4 π volumetric‐modulated arc therapy approach for head and neck cancer
Cited by: 5
Author(s): V. Subramanian, V. Subramani, Srinivas Chilukuri, M Kathirvel, Arun Garg, Shivakumar Swamy, S Kala, Antonella Fogliata, Luca Cozzi
Software Mentions: 1
Published: over 7 years ago

Projects: cran: CP

Papers Mentioning CP 51