Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: popbio

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/popbio

Construction and Analysis of Matrix Population Models
22 versions
Latest release: almost 5 years ago
5 dependent packages
1,757 downloads last month

Papers Mentioning popbio 51

10.1371/journal.pone.0136452
Estimating Limit Reference Points for Western Pacific Leatherback Turtles (Dermochelys coriacea) in the U.S. West Coast EEZ
Cited by: 14
Author(s): K. Alexandra Curtis, Jeffrey E. Moore, Scott R. Benson
Software Mentions: 16
Published: about 9 years ago
10.12688/f1000research.15824.3
sPop: Age-structured discrete-time population dynamics model in C, Python, and R
Cited by: 3
Author(s): Kamil Erguler
Software Mentions: 9
Published: about 4 years ago
10.1098/rspb.2020.1728
Cost-free lifespan extension via optimization of gene expression in adulthood aligns with the developmental theory of ageing
Cited by: 7
Author(s): Martin I. Lind, Hanne Carlsson, Elizabeth M. L. Duxbury, Edward Ivimey‐Cook, Alexei A. Maklakov
Software Mentions: 9
Published: almost 4 years ago
10.1098/rsos.180892
The recovery of North Atlantic right whales,<i>Eubalaena glacialis</i>, has been constrained by human-caused mortality
Cited by: 41
Author(s): Peter J. Corkeron, Philip K. Hamilton, John Bannister, Peter B. Best, Claire Charlton, Karina R. Groch, Ken P. Findlay, Victoria J. Rowntree, Els Vermeulen, Richard M. Pace
Software Mentions: 9
Published: about 6 years ago
10.1371/journal.pone.0195060
Topographic effects on dispersal patterns of Phytophthora cinnamomi at a stand scale in a Spanish heathland
Cited by: 27
Author(s): Enrique Cardillo, Angel Acedo, E. Abad
Software Mentions: 8
Published: over 6 years ago
10.1371/journal.pone.0229689
Population dynamics and biological feasibility of sustainable harvesting as a conservation strategy for tropical and temperate freshwater turtles
Cited by: 11
Author(s): Angga Rachmansah, D. Ryan Norris, James P. Gibbs
Software Mentions: 8
Published: over 4 years ago
10.1098/rspb.2021.0701
Transgenerational fitness effects of lifespan extension by dietary restriction in <i>Caenorhabditis elegans</i>
Cited by: 14
Author(s): Edward Ivimey‐Cook, Kris Sales, Hanne Carlsson, Simone Immler, Tracey Chapman, Alexei A. Maklakov
Software Mentions: 7
Published: over 3 years ago
10.1002/evl3.254
Ageing as “early-life inertia”: Disentangling life-history trade-offs along a lifetime of an individual
Cited by: 9
Author(s): Hanne Carlsson, Edward Ivimey‐Cook, Elizabeth M. L. Duxbury, Nathan Edden, Kris Sales, Alexei A. Maklakov
Software Mentions: 6
Published: about 3 years ago
10.1111/ele.12794
Less favourable climates constrain demographic strategies in plants
Cited by: 78
Author(s): Anna Mária Csergő, Roberto Salguero‐Gómez, Olivier Broennimann, Shaun R. Coutts, Antoine Guisan, Amy L. Angert, Erik Welk, Iain Stott, Brian J. Enquist, Brian J. McGill, Jens Christian Svenning, Cyrille Violle, Yvonne M. Buckley
Software Mentions: 5
Published: over 7 years ago
10.1371/journal.pone.0143122
Forecasting the Effects of Fertility Control on Overabundant Ungulates: White-Tailed Deer in the National Capital Region
Cited by: 24
Author(s): Ann Raiho, Mevin B. Hooten, Scott C. Bates, N. Thompson Hobbs
Software Mentions: 5
Published: almost 9 years ago
10.1128/mBio.01870-17
Gene Co-occurrence Networks Reflect Bacteriophage Ecology and Evolution
Cited by: 40
Author(s): Jason W. Shapiro, Catherine Putonti
Software Mentions: 5
Published: over 6 years ago
10.1371/journal.pone.0119002
Population Regulation in Magellanic Penguins: What Determines Changes in Colony Size?
Cited by: 31
Author(s): Luciana M. Pozzi, Pablo García Borboroglu, P. Dee Boersma, Miguel Pascual
Software Mentions: 5
Published: over 9 years ago
10.1098/rspb.2019.1664
Kin but less than kind: within-group male relatedness does not increase female fitness in seed beetles
Cited by: 4
Author(s): Elena C. Berg, Martin I. Lind, Shannon Monahan, Sophie Bricout, Alexei A. Maklakov
Software Mentions: 5
Published: about 5 years ago
10.1002/evl3.108
Experimentally reduced insulin/IGF-1 signaling in adulthood extends lifespan of parents and improves Darwinian fitness of their offspring
Cited by: 26
Author(s): Martin I. Lind, Sanjana Ravindran, Zuzana Sekajová, Hanne Carlsson, Andrea Hinas, Alexei A. Maklakov
Software Mentions: 5
Published: over 5 years ago
10.1098/rsos.160647
Predicting evolution in response to climate change: the example of sprouting probability in three dormancy-prone orchid species
Cited by: 15
Author(s): Richard P. Shefferson, Ryo Mizuta, Michael J. Hutchings
Software Mentions: 5
Published: almost 8 years ago
10.1371/journal.pntd.0008407
Linking longitudinal and cross-sectional biomarker data to understand host-pathogen dynamics: Leptospira in California sea lions (Zalophus californianus) as a case study
Cited by: 9
Author(s): Katherine C. Prager, Michael Buhnerkempe, Denise J. Greig, Anthony J. Orr, Eric D. Jensen, Forrest M. Gomez, Renee L. Galloway, Qingzhong Wu, Frances M. D. Gulland, James O. Lloyd‐Smith
Software Mentions: 4
Published: over 4 years ago
10.1002/ece3.7301
Vital rates of two small populations of brown bears in Canada and range‐wide relationship between population size and trend
Cited by: 4
Author(s): Michelle McLellan, Bruce N. McLellan, Rahel Sollmann, Heiko Wittmer
Software Mentions: 4
Published: over 3 years ago
10.1371/journal.pone.0110742
Demographic Outcomes and Ecosystem Implications of Giant Tortoise Reintroduction to Española Island, Galapagos
Cited by: 54
Author(s): James P. Gibbs, Elizabeth A. Hunter, Kevin T. Shoemaker, Washington Tapia, Linda J. Cayot
Software Mentions: 4
Published: about 10 years ago
10.1371/journal.pone.0093628
Lifespan Analyses of Forest Raptor Nests: Patterns of Creation, Persistence and Reuse
Cited by: 18
Author(s): María V. Jiménez‐Franco, José Antonio Martínez, José F. Calvo
Software Mentions: 3
Published: over 10 years ago
10.1002/ece3.2600
Community structure affects trophic ontogeny in a predatory fish
Cited by: 35
Author(s): Javier Sánchez‐Hernández, Antti P. Eloranta, Anders G. Finstad, Per‐Arne Amundsen
Software Mentions: 2
Published: almost 8 years ago
10.7717/peerj.3906
Comparative demography of two common scleractinian corals:<i>Orbicella annularis</i>and<i>Porites astreoides</i>
Cited by: 7
Author(s): Francisco J. Soto-Santiago, Alex E. Mercado-Molina, Koralis Reyes-Maldonado, Yaileen Vélez, Claudia Patricia Ruiz-Diaz, Alberto M. Sabat
Software Mentions: 2
Published: about 7 years ago
10.1111/eva.12706
Genetic decline, restoration and rescue of an isolated ungulate population
Cited by: 30
Author(s): Marc‐Antoine Poirier, David W. Coltman, Fanie Pelletier, Jon T. Jorgenson, Marco Festa‐Bianchet
Software Mentions: 2
Published: almost 6 years ago
10.1007/s12015-020-09977-6
Red Blood Cells Mean Corpuscular Volume (MCV) and Red Blood Distribution Width (RDW) Parameters as Potential Indicators of Regenerative Potential in Older Patients and Predictors of Acute Mortality – Preliminary Report
Cited by: 5
Author(s): Katarzyna Brzeźniakiewicz‐Janus, Joanna Rupa‐Matysek, Andrzej Tukiendorf, Tomasz Janus, Mirosław Franków, Marcus D. Lancé, Lidia Gil
Software Mentions: 2
Published: over 4 years ago
10.1002/ece3.4950
Wild boar ( <i>Sus scrofa</i> ) increases species diversity of semidry grassland: Field experiment with simulated soil disturbances
Cited by: 8
Author(s): Eva Horčičková, J Bruna, Jaroslav Vojta
Software Mentions: 2
Published: almost 6 years ago
10.1155/2019/1092415
From “Every Day” Hormonal to Oxidative Stress Biomarkers in Blood and Follicular Fluid, to Embryo Quality and Pregnancy Success?
Cited by: 10
Author(s): Katarzyna Olszak-Wąsik, Anna Bednarska-Czerwińska, Anita Olejek, Andrzej Tukiendorf
Software Mentions: 2
Published: almost 5 years ago
10.1002/ece3.5710
Experimental migration upward in elevation is associated with strong selection on life history traits
Cited by: 16
Author(s): Megan L. Peterson, Amy L. Angert, Kathleen M. Kay
Software Mentions: 2
Published: about 5 years ago
10.1038/s41598-017-05185-4
Modelling West Nile virus transmission risk in Europe: effect of temperature and mosquito biotypes on the basic reproduction number
Cited by: 43
Author(s): Chantal B.F. Vogels, Nienke Hartemink, Constantianus J. M. Koenraadt
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0139919
Interplay between Endophyte Prevalence, Effects and Transmission: Insights from a Natural Grass Population
Cited by: 10
Author(s): Anaïs Gibert, Danièle Magda, Laurent Hazard
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pone.0070354
Carnivora Population Dynamics Are as Slow and as Fast as Those of Other Mammals: Implications for Their Conservation
Cited by: 47
Author(s): Madelon van de Kerk, Hans de Kroon, Dalia Amor Conde, Eelke Jongejans
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0140277
Variable Temperature Stress in the Nematode Caenorhabditis elegans (Maupas) and Its Implications for Sensitivity to an Additional Chemical Stressor
Cited by: 22
Author(s): Nina Cedergreen, Nils Jakob Nørhave, Claus Svendsen, David J. Spurgeon
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0117019
A New Metric of Inclusive Fitness Predicts the Human Mortality Profile
Cited by: 3
Author(s): Saul Justin Newman, Simon Easteal
Software Mentions: 1
Published: almost 10 years ago
10.1371/journal.pone.0175411
Evaluation of harvest and information needs for North American sea ducks
Cited by: 16
Author(s): Mark D. Koneff, Guthrie S. Zimmerman, Chris Dwyer, Kathleen K. Fleming, Paul I. Padding, Patrick K. Devers, Fred A. Johnson, Michael C. Runge, Anthony J. Roberts
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0229147
Modelling the resilience of seagrass communities exposed to pulsed freshwater discharges: A seascape approach
Cited by: 5
Author(s): Clinton William Stipek, Rolando O. Santos, Elizabeth A. Babcock, Diego Lirman
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pone.0088465
Modelling the Impact of Temperature-Induced Life History Plasticity and Mate Limitation on the Epidemic Potential of a Marine Ectoparasite
Cited by: 52
Author(s): Maya L. Groner, G. Gettinby, Marit Stormoen, Crawford W. Revie, Ruth Cox
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0161127
Chronic Wasting Disease Drives Population Decline of White-Tailed Deer
Cited by: 117
Author(s): David R. Edmunds, Matthew J. Kauffman, Brant A. Schumaker, Frederick G. Lindzey, Walter E. Cook, Terry J. Kreeger, Ronald G. Grogan, Todd E. Cornish
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pone.0060353
Fisheries Bycatch as an Inadvertent Human-Induced Evolutionary Mechanism
Cited by: 31
Author(s): Christophe Barbraud, Geoffrey N. Tuck, Robin B. Thomson, Karine Delord, Henri Weimerskirch
Software Mentions: 1
Published: over 11 years ago
10.1038/s42003-018-0197-1
Slow recovery from a disease epidemic in the spotted hyena, a keystone social carnivore
Cited by: 7
Author(s): Sarah Benhaiem, Lucile Marescot, Marion L. East, Stephanie Kramer‐Schadt, Olivier Giménez, Jean‐Dominique Lebreton, Heribert Hofer
Software Mentions: 1
Published: about 6 years ago
10.1002/ece3.6019
Sperm storage reduces the strength of the mate‐finding Allee effect
Cited by: 7
Author(s): María V. Jiménez‐Franco, Andrés Giménez, Roberto C. Rodríguez-Caro, Ana Sanz‐Aguilar, Francisco Botella, José D. Anadón, Thorsten Wiegand, Eva Graciá
Software Mentions: 1
Published: almost 5 years ago
10.1002/ece3.4686
Demographic processes limit upward altitudinal range expansion in a threatened tropical palm
Cited by: 7
Author(s): Aline Cavalcante de Souza, Rita de Cássia Quitete Portela, Eduardo Arcoverde de Mattos
Software Mentions: 1
Published: almost 6 years ago
10.1002/ece3.3865
Life history changes in <i>Trogoderma variabile</i> and <i>T. inclusum</i> due to mating delay with implications for mating disruption as a management tactic
Cited by: 12
Author(s): Alison R. Gerken, James F. Campbell
Software Mentions: 1
Published: almost 7 years ago
10.1002/ece3.3595
Low interannual precipitation has a greater negative effect than seedling herbivory on the population dynamics of a short‐lived shrub, Schiedea obovata
Cited by: 6
Author(s): Lalasia Bialic‐Murphy, Orou G. Gaoue
Software Mentions: 1
Published: almost 7 years ago
10.1002/ece3.4010
<tt>Pop-Inference</tt> : An educational application to evaluate statistical differences among populations
Cited by: 4
Author(s): Julio Arrontes
Software Mentions: 1
Published: over 6 years ago
10.1002/ece3.765
Possible combined effects of climate change, deforestation, and harvesting on the epiphyte <i>Catopsis compacta</i>: a multidisciplinary approach
Cited by: 10
Author(s): Rafael F. del Castillo, Sonia Trujillo‐Argueta, Raúl Rivera-García, Zaneli Gómez‐Ocampo, Demetria Mondragón
Software Mentions: 1
Published: about 11 years ago
10.3389/fpls.2021.625475
Population Dynamics and Life History Response to Precipitation Changes for a Desert Ephemeral Plant With Biseasonal Germination
Cited by: 6
Author(s): Xin Mu, Gang Huang, Yan Li, Xin Zheng, Guang-Hui Xu, Xue Wu, Yugang Wang, Yan Liu
Software Mentions: 1
Published: almost 4 years ago
10.3390/insects8010008
Wolbachia Affects Reproduction and Population Dynamics of the Coffee Berry Borer (Hypothenemus hampei): Implications for Biological Control
Cited by: 17
Author(s): Yobana A. Mariño, J. C. V. Rodrigues, Paul Bayman
Software Mentions: 1
Published: almost 8 years ago
10.1111/j.1365-2656.2011.01928.x
Predicting the potential demographic impact of predators on their prey: a comparative analysis of two carnivore–ungulate systems in Scandinavia
Cited by: 124
Author(s): Vincenzo Gervasi, Erlend B. Nilsen, Håkan Sand, Manuela Panzacchi, Geir Rune Rauset, Hans Christian Pedersen, Jonas Kindberg, Petter Wabakken, Barbara Zimmermann, John Oddén, Olof Liberg, Jon E. Swenson, John D. C. Linnell
Software Mentions: 1
Published: about 13 years ago
10.1098/rspb.2014.1840
The relative importance of direct and indirect effects of hunting mortality on the population dynamics of brown bears
Cited by: 75
Author(s): Jacinthe Gosselin, Andreas Zedrosser, Jon E. Swenson, Fanie Pelletier
Software Mentions: 1
Published: almost 10 years ago
10.1093/aobpla/plw044
Combining incidence and demographic modelling approaches to evaluate metapopulation parameters for an endangered riparian plant
Cited by: 3
Author(s): Noah Charney, Sydne Record
Software Mentions: 1
Published: over 9 years ago
10.1038/s41598-018-22632-y
Spatially explicit poisoning risk affects survival rates of an obligate scavenger
Cited by: 24
Author(s): Ara Monadjem, Adam Kane, André Botha, Chris Kelly, Campbell Murn
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-020-72778-x
Breeding transients in capture–recapture modeling and their consequences for local population dynamics
Cited by: 4
Author(s): Daniel Oró, Daniel F. Doak
Software Mentions: 1
Published: about 4 years ago
10.1038/s41598-020-78307-0
Bioturbation by endogeic earthworms facilitates entomopathogenic nematode movement toward herbivore-damaged maize roots
Cited by: 4
Author(s): Sandrine Fattore, Zhenggao Xiao, Adrienne L. Godschalx, Grégory Röder, Ted C. J. Turlings, Renée‐Claire Le Bayon, Sergio Rasmann
Software Mentions: 1
Published: almost 4 years ago