Data

Tools

Indexes

Applications

Experiments

Papers

bioconductor: HMMcopy
Copy number prediction with correction for GC and mappability bias for HTS data
Papers that mentioned: 18
Very Likely Science (90)
cran: TGS
Rapid Reconstruction of Time-Varying Gene Regulatory Networks
Papers that mentioned: 18
Very Likely Science (100)
pypi: prediction
Django skeleton project
Papers that mentioned: 18
Very Likely Science (65)
cran: tmod
Feature Set Enrichment Analysis for Metabolomics and Transcriptomics
Papers that mentioned: 18
Very Likely Science (91)
pypi: PyML
A python HTML builder library.
Papers that mentioned: 18
Very Likely Science (65)
pypi: multi
Comprehensive library for univariate and multivariate time series analysis
Papers that mentioned: 18
Very Likely Science (75)
cran: merTools
Tools for Analyzing Mixed Effect Regression Models
Papers that mentioned: 18
Very Likely Science (85)
pypi: review
upload script for Rietveld code review tool
Papers that mentioned: 18
Very Likely Science (65)
cran: adehabitatHS
Analysis of Habitat Selection by Animals
Papers that mentioned: 18
Very Likely Science (85)
bioconductor: NuPoP
An R package for nucleosome positioning prediction
Papers that mentioned: 18
Very Likely Science (90)
pypi: BNPMDA
description
Papers that mentioned: 18
Very Likely Science (65)
pypi: merlin
The building blocks of workflows!
Papers that mentioned: 18
Very Likely Science (100)
pypi: destiny
Papers that mentioned: 18
Very Likely Science (65)
pypi: regex
Alternative regular expression module, to replace re.
Papers that mentioned: 18
Very Likely Science (90)
pypi: enrichr
Security Enrichment Framework
Papers that mentioned: 18
Likely Science (50)
bioconductor: MBASED
Package containing functions for ASE analysis using Meta-analysis Based Allele-Specific Expression Detection
Papers that mentioned: 18
Very Likely Science (100)
cran: Mondrian
A Simple Graphical Representation of the Relative Occurrence and Co-Occurrence of Events
Papers that mentioned: 18
Very Likely Science (75)
pypi: CAMSA
CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
Papers that mentioned: 18
Very Likely Science (100)
cran: mc2d
Tools for Two-Dimensional Monte-Carlo Simulations
Papers that mentioned: 18
Very Likely Science (85)
pypi: classify
Generate concrete Class documentation for Python Classes.
Papers that mentioned: 18
Very Likely Science (85)
cran: plsdepot
Partial Least Squares (PLS) Data Analysis Methods
Papers that mentioned: 18
Very Likely Science (85)
cran: nicheROVER
Niche Region and Niche Overlap Metrics for Multidimensional Ecological Niches
Papers that mentioned: 18
Very Likely Science (85)
pypi: Calculations
To calculate equations and draw diagrams
Papers that mentioned: 18
Very Likely Science (80)
cran: CUB
A Class of Mixture Models for Ordinal Data
Papers that mentioned: 18
Very Likely Science (75)
cran: phyloclim
Integrating Phylogenetics and Climatic Niche Modeling
Papers that mentioned: 18
Very Likely Science (85)
cran: ncvreg
Regularization Paths for SCAD and MCP Penalized Regression Models
Papers that mentioned: 18
Very Likely Science (100)
cran: DAIME
Effects of Changing Deposition Rates
Papers that mentioned: 18
Very Likely Science (75)
pypi: GenomeDiagram
Genome and Biological Sequence Schematic Diagram Library
Papers that mentioned: 18
Very Likely Science (65)
pypi: ccs
Crypto currencies stocks (ccs) is Python package for communication with stocks which are traiding with crypto currencies. Documentation is placed http://cryptocurrenciesstocks.readthedocs.io
Papers that mentioned: 18
Very Likely Science (65)
pypi: rs
A Simple Remote Server and Training Manager.
Papers that mentioned: 18
Very Likely Science (80)
bioconductor: TissueEnrich
Tissue-specific gene enrichment analysis
Papers that mentioned: 18
Very Likely Science (100)
pypi: gdtools
GeneDock command-line client for interacting with GeneDock platform
Papers that mentioned: 18
Very Likely Science (65)
cran: ctmm
Continuous-Time Movement Modeling
Papers that mentioned: 18
Very Likely Science (100)
pypi: Pacific
Pacific
Papers that mentioned: 18
Very Likely Science (65)
cran: prediction
Tidy, Type-Safe 'prediction()' Methods
Papers that mentioned: 18
Very Likely Science (95)
bioconductor: CrispRVariants
Tools for counting and visualising mutations in a target location
Papers that mentioned: 18
Very Likely Science (90)
pypi: pynast
The Python Nearest Alignment Space Termination tool
Papers that mentioned: 18
Very Likely Science (65)
cran: WA
While-Alive Loss Rate for Recurrent Event in the Presence of Death
Papers that mentioned: 18
Very Likely Science (83)
pypi: covid
Python package to get information regarding the novel corona virus provided by Johns Hopkins university and worldometers.info
Papers that mentioned: 18
Very Likely Science (65)
pypi: Unimod
simple wrapper around the Unimod amino acid modificatins database
Papers that mentioned: 18
Very Likely Science (100)
pypi: PePr
Peak-calling and Prioritization pipeline for replicated ChIP-Seq data
Papers that mentioned: 18
Very Likely Science (100)
bioconductor: RBGL
An interface to the BOOST graph library
Papers that mentioned: 18
Very Likely Science (90)
pypi: SciTools
Python library for scientific computing
Papers that mentioned: 18
Very Likely Science (90)
cran: MetaPath
Perform the Meta-Analysis for Pathway Enrichment Analysis (MAPE)
Papers that mentioned: 18
Very Likely Science (85)
cran: MMD
Minimal Multilocus Distance (MMD) for Source Attribution and Loci Selection
Papers that mentioned: 18
Very Likely Science (83)
pypi: bio
bio
Papers that mentioned: 18
Very Likely Science (65)
pypi: nipype
Neuroimaging in Python: Pipelines and Interfaces
Papers that mentioned: 18
Very Likely Science (80)
pypi: CODATA
All CODATA constants with units, uncertainty and description.
Papers that mentioned: 18
Very Likely Science (65)
cran: merlin
Mixed Effects Regression for Linear, Non-Linear and User-Defined Models
Papers that mentioned: 18
Very Likely Science (93)
cran: RGA
A Google Analytics API Client
Papers that mentioned: 18
Likely Science (50)
cran: NAM
Nested Association Mapping
Papers that mentioned: 18
Very Likely Science (75)
cran: EML
Read and Write Ecological Metadata Language Files
Papers that mentioned: 18
Very Likely Science (100)
pypi: libraries
Papers that mentioned: 18
Unlikely Science (0)
pypi: nf-core
Helper tools for use with nf-core Nextflow pipelines.
Papers that mentioned: 18
Very Likely Science (100)
cran: CIDER
Meta-Clustering for Single-Cell Data Integration and Evaluation
Papers that mentioned: 18
Very Likely Science (100)
cran: gdtools
Utilities for Graphical Rendering and Fonts Management
Papers that mentioned: 18
Very Likely Science (97)
bioconductor: biomformat
An interface package for the BIOM file format
Papers that mentioned: 18
Very Likely Science (100)
pypi: GML
Automating Data Science
Papers that mentioned: 18
Very Likely Science (75)
bioconductor: destiny
Creates diffusion maps
Papers that mentioned: 18
Very Likely Science (100)
bioconductor: diffcyt
Differential discovery in high-dimensional cytometry via high-resolution clustering
Papers that mentioned: 18
Very Likely Science (100)
cran: DEoptim
Global Optimization by Differential Evolution
Papers that mentioned: 18
Very Likely Science (100)
pypi: TIE
A minimalist template ENGINE allowing users to define their own simple templating languages.
Papers that mentioned: 18
Very Likely Science (65)
cran: fastai
Interface to 'fastai'
Papers that mentioned: 18
Very Likely Science (85)
bioconductor: shinyMethyl
Interactive visualization for Illumina methylation arrays
Papers that mentioned: 18
Very Likely Science (100)
bioconductor: CRISPRseek
Design of target-specific guide RNAs in CRISPR-Cas9, genome-editing systems
Papers that mentioned: 18
Very Likely Science (83)
cran: twang
Toolkit for Weighting and Analysis of Nonequivalent Groups
Papers that mentioned: 18
Very Likely Science (85)
bioconductor: SeqGSEA
Gene Set Enrichment Analysis (GSEA) of RNA-Seq Data: integrating differential expression and splicing
Papers that mentioned: 18
Very Likely Science (100)
pypi: insane
A versatile tool for building membranes and/or solvent with proteins.
Papers that mentioned: 18
Very Likely Science (90)
cran: RDS
Respondent-Driven Sampling
Papers that mentioned: 18
Very Likely Science (83)
cran: XR
A Structure for Interfaces from R
Papers that mentioned: 18
Very Likely Science (75)
pypi: LIA
An assistant to help convert/import data to ledger-cli
Papers that mentioned: 18
Very Likely Science (65)
pypi: fastai
fastai simplifies training fast and accurate neural nets using modern best practices
Papers that mentioned: 18
Very Likely Science (100)
pypi: resources
Resource centered REST API clients
Papers that mentioned: 18
Very Likely Science (65)
pypi: k
enums for Python
Papers that mentioned: 18
Very Likely Science (65)
cran: stringdist
Approximate String Matching, Fuzzy Text Search, and String Distance Functions
Papers that mentioned: 18
Very Likely Science (100)
pypi: iCount
Computational pipeline for analysis of iCLIP data
Papers that mentioned: 18
Very Likely Science (85)
cran: SAPP
Statistical Analysis of Point Processes
Papers that mentioned: 18
Very Likely Science (85)
pypi: with
A shell context manager
Papers that mentioned: 18
Very Likely Science (65)
bioconductor: ALPS
Papers that mentioned: 18
Unlikely Science (0)
cran: classInt
Choose Univariate Class Intervals
Papers that mentioned: 18
Very Likely Science (95)
cran: InSilicoVA
Probabilistic Verbal Autopsy Coding with 'InSilicoVA' Algorithm
Papers that mentioned: 18
Very Likely Science (100)
pypi: encore
Low-level core modules for building Python applications
Papers that mentioned: 18
Very Likely Science (65)
bioconductor: coMET
coMET: visualisation of regional epigenome-wide association scan (EWAS) results and DNA co-methylation patterns
Papers that mentioned: 18
Very Likely Science (100)
cran: hBayesDM
Hierarchical Bayesian Modeling of Decision-Making Tasks
Papers that mentioned: 18
Very Likely Science (100)
cran: insane
INsulin Secretion ANalysEr
Papers that mentioned: 18
Very Likely Science (70)
bioconductor: Sushi
Papers that mentioned: 18
Unlikely Science (0)
cran: HardyWeinberg
Statistical Tests and Graphics for Hardy-Weinberg Equilibrium
Papers that mentioned: 18
Very Likely Science (93)
cran: imputeTS
Time Series Missing Value Imputation
Papers that mentioned: 18
Very Likely Science (100)
pypi: Adept
Simple binding for Adept
Papers that mentioned: 18
Very Likely Science (80)
cran: elasticnet
Elastic-Net for Sparse Estimation and Sparse PCA
Papers that mentioned: 17
Very Likely Science (83)
cran: IGP
Interchangeable Gaussian Process Models
Papers that mentioned: 17
Very Likely Science (75)
cran: msigdbr
MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format
Papers that mentioned: 17
Very Likely Science (95)
pypi: pyseer
Papers that mentioned: 17
Unlikely Science (0)
bioconductor: HELP
Tools for HELP data analysis
Papers that mentioned: 17
Very Likely Science (100)
pypi: rapa
Robust Automtated Parsimony Analysis
Papers that mentioned: 17
Very Likely Science (100)
bioconductor: GOTHiC
Binomial test for Hi-C data analysis
Papers that mentioned: 17
Very Likely Science (100)
cran: DGCA
Differential Gene Correlation Analysis
Papers that mentioned: 17
Very Likely Science (85)
cran: HiCseg
Detection of domains in HiC data
Papers that mentioned: 17
Very Likely Science (75)
cran: etm
Empirical Transition Matrix
Papers that mentioned: 17
Very Likely Science (75)
cran: irtoys
A Collection of Functions Related to Item Response Theory (IRT)
Papers that mentioned: 17
Very Likely Science (75)