Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: coMET
https://packages.ecosyste.ms/registries/bioconductor.org/packages/coMET
coMET: visualisation of regional epigenome-wide association scan (EWAS) results and DNA co-methylation patterns
1 version
Latest release: about 1 year ago
19,388 downloads total
Papers Mentioning coMET 18
10.1186/s12916-020-01686-8
In utero and childhood exposure to tobacco smoke and multi-layer molecular signatures in childrenCited by: 19
Author(s): Marta Vives-Usano, Carles Hernández-Ferrer, Léa Maitre, Carlos Ruiz‐Arenas, Sandra Andrušaitytė, Eva Borràs, Ángel Carracedo, Maribel Casas, Leda Chatzi, Muireann Coen, Xavier Estivill, Juan R. González, Kristine B. Gützkow, Hector C. Keun, Chung-Ho E Lau, Solène Cadiou, Johanna Lepeule, Dan Mason, Inés Quintela, Oliver Robinson, Eduard Sabidó, Gillian Santorelli, Per E. Schwarze, Alexandros P. Siskos, Rémy Slama, Marina Vafeiadi, Eulàlia Martı́, Martine Vrijheid, Mariona Bustamante
Software Mentions: 14
Published: over 4 years ago
10.1038/s41598-018-37746-6
The methylome of the celiac intestinal epithelium harbours genotype-independent alterations in the HLA regionCited by: 22
Author(s): Nora Fernández-Jiménez, Koldo García-Etxebarria, Leticia Plaza-Izurieta, Irati Romero-Garmendia, Amaia Jauregi-Miguel, María Legarda, Szilvia Ecsedi, Ainara Castellanos–Rubio, Vincent Cahais, Cyrille Cuenin, Davide Degli Esposti, Iñaki Irastorza, Héctor Hernández-Vargas, Zdenko Herceg, José Ramón Bilbao
Software Mentions: 7
Published: almost 6 years ago
10.3389/fnins.2021.682247
Decreased MEF2A Expression Regulated by Its Enhancer Methylation Inhibits Autophagy and May Play an Important Role in the Progression of Alzheimer’s DiseaseCited by: 8
Author(s): Hui Li, Rui Wang, Xuqi Guo, Yugang Jiang
Software Mentions: 7
Published: over 3 years ago
10.1186/s12859-015-0568-2
coMET: visualisation of regional epigenome-wide association scan results and DNA co-methylation patternsCited by: 95
Author(s): Tiphaine Martin, İdil Yet, Pei-Chien Tsai, Jordana T. Bell
Software Mentions: 7
Published: over 9 years ago
10.1289/EHP595
Small-Magnitude Effect Sizes in Epigenetic End Points are Important in Children’s Environmental Health Studies: The Children’s Environmental Health and Disease Prevention Research Center’s Epigenetics Working GroupCited by: 212
Author(s): Carrie V. Breton, Carmen J. Marsit, Elaine M. Faustman, Kari Nadeau, Jaclyn M. Goodrich, Dana C. Dolinoy, Julie B. Herbstman, Nina Holland, Janine M. LaSalle, Rebecca Jean Schmidt, Paul Yousefi, Frederica P. Perera, Bonnie R. Joubert, Joseph L. Wiemels, Miles G. Taylor, Ivana V. Yang, Rui Chen, Kinjal Hew, Deborah M. Hussey Freeland, Rachel L. Miller, Susan K. Murphy
Software Mentions: 6
Published: over 7 years ago
10.1186/s13148-016-0266-6
DNA methylation and smoking in Korean adults: epigenome-wide association studyCited by: 48
Author(s): Mi Kyeong Lee, Yoonki Hong, Sun‐Young Kim, Stephanie J. London, Woo Jin Kim
Software Mentions: 5
Published: about 8 years ago
10.3390/cells9030665
Dysregulated Antibody, Natural Killer Cell and Immune Mediator Profiles in Autoimmune Thyroid DiseasesCited by: 17
Author(s): Tiphaine Martin, Kristina M. Ilieva, Alessia Visconti, Michelle Beaumont, Steven Kiddle, Richard Dobson, Massimo Mangino, Ee Mun Lim, Marija Pezer, Claire J. Steves, Jordana T. Bell, Scott G. Wilson, Gordan Lauc, Mario Roederer, John P. Walsh, Tim D. Spector, Sophia N. Karagiannis
Software Mentions: 5
Published: over 4 years ago
10.1186/s13148-021-01004-w
Profile of copper-associated DNA methylation and its association with incident acute coronary syndromeCited by: 15
Author(s): Pinpin Long, Qiuhong Wang, Yizhi Zhang, Xiaoyan Zhu, Kuai Yu, Haijing Jiang, Xuezhen Liu, Min Zhou, Yu Yuan, Kang Liu, Jing Jiang, Xiaomin Zhang, Meian He, Huan Guo, Weihong Chen, Jing Yuan, Long Cheng, Liming Liang, Tangchun Wu
Software Mentions: 4
Published: almost 4 years ago
10.3389/fphar.2019.00126
Making Sense of the Epigenome Using Data Integration ApproachesCited by: 46
Author(s): Emma Cazaly, Joseph Saad, Wenyu Wang, Caroline A. Heckman, Miina Ollikainen, Jing Tang
Software Mentions: 4
Published: almost 6 years ago
10.18632/aging.202353
Cell lineage-specific methylome and genome alterations in goutCited by: 6
Author(s): Chia‐Chun Tseng, Wei‐Ting Liao, Man-Chun Wong, Chung‐Jen Chen, Su-Chen Lee, Jeng-Hsien Yen, Shun‐Jen Chang
Software Mentions: 3
Published: almost 4 years ago
10.1186/s13073-017-0419-z
Unique DNA methylation signature in HPV-positive head and neck squamous cell carcinomasCited by: 59
Author(s): Davide Degli Esposti, Athéna Sklias, Sheila Coelho Soares Lima, Stéphanie Beghelli-de la Forest Divonne, Vincent Cahais, Nora Fernández-Jiménez, Marie-Pierre Cros, Szilvia Ecsedi, Cyrille Cuenin, Liacine Bouaoun, Graham Byrnes, Rosita Accardi, Anne Sudaka, Valérie Giordanengo, Héctor Hernandez-Vargas, Luís Felipe Ribeiro Pinto, Ellen Van Obberghen-Schilling, Zdenko Herceg
Software Mentions: 3
Published: over 7 years ago
10.1038/s41398-020-00948-6
Association between DNA methylation levels in brain tissue and late-life depression in community-based participantsCited by: 23
Author(s): Anke Hüls, Chloe Robins, Karen N. Conneely, Philip L. De Jager, David A. Bennett, Michael P. Epstein, Thomas S. Wingo, Aliza P. Wingo
Software Mentions: 3
Published: over 4 years ago
10.1038/s41598-021-86494-7
DNA methylation architecture of the ACE2 gene in nasal cells of childrenCited by: 20
Author(s): Andrés Cárdenas, Sheryl L. Rifas–Shiman, Joanne E. Sordillo, Dawn L. DeMeo, Andrea A. Baccarelli, Marie‐France Hivert, Diane R. Gold, Emily Oken
Software Mentions: 2
Published: over 3 years ago
10.3390/jpm11030216
Translational Research in the Era of Precision Medicine: Where We Are and Where We Will GoCited by: 38
Author(s): Ruggero De Maria Marchiano, Gabriele Di Sante, Geny Piro, Carmine Carbone, Giampaolo Tortora, Luca Boldrini, Antonella Pietragalla, Gennaro Daniele, Maria Tredicine, Alfredo Cesario, Vincenzo Valentini, Daniela Gallo, Gabriele Babini, Marika D’Oria, Giovanni Scambia
Software Mentions: 2
Published: over 3 years ago
10.1186/s13148-018-0558-0
Smoking induces coordinated DNA methylation and gene expression changes in adipose tissue with consequences for metabolic healthCited by: 96
Author(s): Pei Chien Tsai, Craig A. Glastonbury, Melissa Eliot, Sailalitha Bollepalli, İdil Yet, Juan Castillo-Fernandez, Elena Carnero‐Montoro, Thomas Hardiman, Tiphaine Martin, Alice Vickers, Massimo Mangino, Kirsten Ward, Kirsi H. Pietiläinen, Panos Deloukas, Tim D. Spector, Ana Viñuela, Eric B. Loucks, Miina Ollikainen, Karl T. Kelsey, Kerrin S. Small, Jordana T. Bell
Software Mentions: 2
Published: about 6 years ago
10.1186/s13040-019-0207-y
Integrative analysis of genetic and epigenetic profiling of lung squamous cell carcinoma (LSCC) patients to identify smoking level relevant biomarkersCited by: 3
Author(s): Bidong Ma, Zhiyou Huang, Qian Wang, Jizhou Zhang, Bin Zhou, Jiaohong Wu
Software Mentions: 2
Published: about 5 years ago
10.1093/hmg/ddu739
Prenatal exposure to maternal smoking and offspring DNA methylation across the lifecourse: findings from the Avon Longitudinal Study of Parents and Children (ALSPAC)Cited by: 309
Author(s): Rebecca C Richmond, Andrew Simpkin, Geoff Woodward, Tom R. Gaunt, Oliver Lyttleton, Wendy L. McArdle, Susan M. Ring, Andrew Smith, Nicholas J. Timpson, Kate Tilling, George Davey Smith, Caroline L Relton
Software Mentions: 1
Published: almost 10 years ago
10.1186/s12920-018-0363-9
DNA methylation in the APOE genomic region is associated with cognitive function in African AmericansCited by: 30
Author(s): Jiaxuan Liu, Wei Zhao, Erin B. Ware, Stephen T. Turner, Thomas H. Mosley, Jennifer A. Smith
Software Mentions: 1
Published: over 6 years ago