Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1038/s41598-018-37746-6
https://doi.org/10.1038/s41598-018-37746-6
The methylome of the celiac intestinal epithelium harbours genotype-independent alterations in the HLA region
Cited by: 22
Author(s): Nora Fernández-Jiménez, Koldo García-Etxebarria, Leticia Plaza-Izurieta, Irati Romero-Garmendia, Amaia Jauregi-Miguel, María Legarda, Szilvia Ecsedi, Ainara Castellanos–Rubio, Vincent Cahais, Cyrille Cuenin, Davide Degli Esposti, Iñaki Irastorza, Héctor Hernández-Vargas, Zdenko Herceg, José Ramón Bilbao
Published: over 5 years ago
Software Mentions 7
bioconductor: coMET
coMET: visualisation of regional epigenome-wide association scan (EWAS) results and DNA co-methylation patternsPapers that mentioned: 18
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distributionPapers that mentioned: 9,583
bioconductor: DMRcate
Methylation array and sequencing spatial analysis methodsPapers that mentioned: 132
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in RPapers that mentioned: 6,568
bioconductor: wateRmelon
Illumina 450 and EPIC methylation array normalization and metricsPapers that mentioned: 108