Ecosyste.ms: Papers

10.1371/journal.pone.0236732

Determining mean and standard deviation of the strong gravity prior through simulations
Cited by: 3
Author(s): Björn Jörges, Joan López‐Moliner
Software Mentions: 6
Published: over 4 years ago

10.1038/s41598-018-25927-2

Helicobacter pylori-infected C57BL/6 mice with different gastrointestinal microbiota have contrasting gastric pathology, microbial and host immune responses
Cited by: 24
Author(s): Zhongming Ge, Alexander Sheh, Yan Feng, Sureshkumar Muthupalani, Lili Ge, Chuanwu Wang, Susanna Kurnick, Anthony Mannion, Mark T. Whary, James G. Fox
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pone.0214833

Disparate effects of antibiotic-induced microbiome change and enhanced fitness in Daphnia magna
Cited by: 27
Author(s): Asa Motiei, Björn Brindefalk, Martin Ogonowski, Rehab El-Shehawy, Paulina Pastuszek, Karin Ek, Birgitta Liewenborg, Klas I. Udekwu, Elena Gorokhova
Software Mentions: 5
Published: almost 5 years ago

10.1186/s40168-020-00966-y

Dicer-like proteins influence Arabidopsis root microbiota independent of RNA-directed DNA methylation
Cited by: 10
Author(s): Rajesh Kaushal, Peng Li, Sunil Kumar Singh, Mengrui Zhang, Xinlian Zhang, Juan Ignacio Vílchez, Zhen Wang, Danxia He, Yu Ye, Suhui Lv, Zhongtian Xu, Rafael J. L. Morcillo, Wei Wang, Wei-Chang Huang, Paul W. Paré, Chun‐Peng Song, Jian‐Kang Zhu, Renyi Liu, Wenxuan Zhong, Ping Ma, Huiming Zhang
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0047500

Differences in Soil Fungal Communities between European Beech (Fagus sylvatica L.) Dominated Forests Are Related to Soil and Understory Vegetation
Cited by: 88
Author(s): Tesfaye Wubet, Sabina Christ, Ingo Schöning, Steffen Boch, Melanie Gawlich, Beatrix Schnabel, Markus Fischer, François Buscot
Software Mentions: 4
Published: about 12 years ago

10.7554/eLife.54639

Approaching boiling point stability of an alcohol dehydrogenase through computationally-guided enzyme engineering
Cited by: 29
Author(s): Friso S. Aalbers, Maximilian J. L. J. Fürst, S. Rovida, Miloš Trajković, J. Rubén Gómez Castellanos, Sebastian Bartsch, Andreas Vogel, Andrea Mattevi, Marco W. Fraaije
Software Mentions: 3
Published: over 4 years ago

10.1186/s40168-021-01081-2

A probiotic has differential effects on allergic airway inflammation in A/J and C57BL/6 mice and is correlated with the gut microbiome
Cited by: 12
Author(s): Mateus B. Casaro, Andrew Maltez Thomas, Erasmo Garcia Mendes, Claudio Fukumori, Willian R. Ribeiro, Fernando A. Oliveira, Amanda R. Crisma, Gilson Masahiro Murata, Bruna Bizzarro, Anderson Sá-Nunes, João Carlos Setúbal, Márcia Pinto Alves Mayer, Flaviano S. Martins, Angélica T. Vieira, Ana Tada Fonseca Brasil Antiorio, Wothan Tavares-de-Lima, Niels Olsen Saraiva Câmara, Rui Curi, Emmanuel Dias-Neto, Caroline M. Ferreira
Software Mentions: 3
Published: over 3 years ago

10.12688/wellcomeopenres.16031.2

Large CRISPR-Cas-induced deletions in the oxamniquine resistance locus of the human parasite Schistosoma mansoni
Cited by: 7
Author(s): Geetha Sankaranarayanan, Avril Coghlan, Patrick Driguez, Magda E. Lotkowska, Mandy Sanders, Nancy Holroyd, Alan S. Tracey, Matthew Berriman, Gabriel Rinaldi
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0243431

Sex differences in chronic kidney disease awareness among US adults, 1999 to 2018
Cited by: 25
Author(s): Sebastian Hödlmoser, Wolfgang C. Winkelmayer, Jarcy Zee, Roberto Pecoits–Filho, Ronald L. Pisoni, Friedrich K. Port, Bruce M. Robinson, Robin Ristl, Simon Krenn, Amelie Kurnikowski, Michał Lewandowski, Allison Ton, Juan Jesús Carrero, Eva Schernhammer, Manfred Hecking
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-021-99028-y

The value of gut microbiota to predict feed efficiency and growth of rabbits under different feeding regimes
Cited by: 10
Author(s): María Velasco-Galilea, M. Piles, Yuliaxis Ramayo-Caldas, Juan Pablo Sánchez
Software Mentions: 3
Published: about 3 years ago

10.1038/srep15557

The nasopharyngeal microbiota of feedlot cattle
Cited by: 55
Author(s): Devin B. Holman, Edouard Timsit, Trevor W. Alexander
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0198359

Oxaliplatin-induced changes in microbiota, TLR4+ cells and enhanced HMGB1 expression in the murine colon
Cited by: 30
Author(s): Vanesa Stojanovska, Rachel M. McQuade, Sarah Fraser, Monica D. Prakash, Shakuntla Gondalia, Rhian Stavely, Enzo A. Palombo, Vasso Apostolopoulos, Samy Sakkal, Kulmira Nurgali
Software Mentions: 2
Published: over 6 years ago

10.1002/mbo3.135

Symbiotic prokaryotic communities from different populations of the giant barrel sponge, <i>Xestospongia muta</i>
Cited by: 43
Author(s): Cara L. Fiore, Jessica K. Jarett, Michael P. Lesser
Software Mentions: 2
Published: about 11 years ago

10.1038/s41598-019-54015-2

Persistence of single species of symbionts across multiple closely-related host species
Cited by: 7
Author(s): Jorge Doña, Carolina Osuna‐Mascaró, Kevin P. Johnson, David Serrano, Raül Aymí, Roger Jovani
Software Mentions: 1
Published: almost 5 years ago

10.7717/peerj.1854

Aging and serum MCP-1 are associated with gut microbiome composition in a murine model
Cited by: 80
Author(s): Melissa N. Conley, Carmen P. Wong, Kyle M. Duyck, Norman G. Hord, Emily Ho, Thomas J. Sharpton
Software Mentions: 1
Published: over 8 years ago

10.1186/s12866-016-0738-z

16S rRNA gene sequencing of mock microbial populations- impact of DNA extraction method, primer choice and sequencing platform
Cited by: 217
Author(s): Fiona Fouhy, Adam G. Clooney, Catherine Stanton, Marcus J. Claesson, Paul D. Cotter
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2015.00253

Structure, mineralogy, and microbial diversity of geothermal spring microbialites associated with a deep oil drilling in Romania
Cited by: 21
Author(s): Cristian Coman, Cecilia Chiriac, Michael S. Robeson, Corina Ionescu, Nicolae Dragoş, Lucian Barbu‐Tudoran, Adrian‐Ştefan Andrei, Horia Leonard Banciu, Cosmin Sicora, Mircea Podar
Software Mentions: 1
Published: over 9 years ago

10.1186/s13059-020-02068-2

Cell type-specific genome scans of DNA methylation divergence indicate an important role for transposable elements
Cited by: 7
Author(s): Önder Kartal, Marc W. Schmid, Ueli Grossniklaus
Software Mentions: 1
Published: over 4 years ago