Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: merlin

https://packages.ecosyste.ms/registries/pypi.org/packages/merlin

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Papers Mentioning merlin 18

gapseq: informed prediction of bacterial metabolic pathways and reconstruction of accurate metabolic models
Cited by: 77
Author(s): Johannes Zimmermann, Christoph Kaleta, Silvio Waschina
Software Mentions: 18
Published: over 3 years ago

10.1186/s12874-020-01192-8

Relaxing the assumption of constant transition rates in a multi-state model in hospital epidemiology
Cited by: 3
Author(s): Martha Hill, Paul C. Lambert, Michael J. Crowther
Software Mentions: 6
Published: over 3 years ago

10.1186/1755-8794-1-23

A genome-wide search replicates evidence of a quantitative trait locus for circulating angiotensin I-converting enzyme (ACE) unlinked to the ACE gene
Cited by: 9
Author(s): Colin A. McKenzie, Xiaofeng Zhu, Terrence Forrester, Amy Luke, Adebowale Adeyemo, Nourdine Bouzekri, Richard S. Cooper
Software Mentions: 5
Published: over 16 years ago

10.1371/journal.pone.0116920

Investigating the Genetics of Hippocampal Volume in Older Adults without Dementia
Cited by: 9
Author(s): Karen A. Mather, Nicola J. Armstrong, Wen Wang, John B. Kwok, Amelia A. Assareh, Anbupalam Thalamuthu, Simone Reppermund, Konsta Duesing, Margaret J. Wright, David Ames, Julian N. Trollor, Henry Brodaty, Peter R. Schofield, Perminder S. Sachdev
Software Mentions: 4
Published: over 9 years ago

10.3390/ijms20081996

Two Sides of the Coin: Ezrin/Radixin/Moesin and Merlin Control Membrane Structure and Contact Inhibition
Cited by: 45
Author(s): Katharine A. Michie, Adam Bermeister, Neil O. Robertson, Sophia C. Goodchild, Paul M. G. Curmi
Software Mentions: 3
Published: over 5 years ago

10.1186/1471-2164-13-517

Genome-wide metabolic (re-) annotation of Kluyveromyces lactis
Cited by: 16
Author(s): Óscar Dias, Andreas Gombert, Eugénio C. Ferreira, Isabel Rocha
Software Mentions: 3
Published: almost 12 years ago

10.1111/stan.12188

Mixed‐effects models for health care longitudinal data with an informative visiting process: A Monte Carlo simulation study
Cited by: 17
Author(s): Alessandro Gasparini, Keith R. Abrams, Jessica Barrett, Rupert Major, Michael Sweeting, Nigel J. Brunskill, Michael J. Crowther
Software Mentions: 3
Published: about 5 years ago

10.3390/jof6030171

Genome-Scale Metabolic Model of the Human Pathogen Candida albicans: A Promising Platform for Drug Target Prediction
Cited by: 11
Author(s): Romeu Viana, Óscar Dias, Davide Rafael Santos Lagoa, Mónica Galocha, Isabel Rocha, Miguel C. Teixeira
Software Mentions: 3
Published: about 4 years ago

10.1038/s41598-017-15705-x

Leveraging genome characteristics to improve gene discovery for putamen subcortical brain structure
Cited by: 15
Author(s): Chi‐Hua Chen, Yunpeng Wang, Min‐Tzu Lo, Andrew J. Schork, Chun Chieh Fan, Dominic Holland, Karolina Kauppi, Olav B. Smeland, Srdjan Djurovic, Nilotpal Sanyal, Derrek P. Hibar, Paul M. Thompson, Wesley K. Thompson, Ole A. Andreassen, Anders M. Dale
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0227683

TranCEP: Predicting the substrate class of transmembrane transport proteins using compositional, evolutionary, and positional information
Cited by: 16
Author(s): Munira Alballa, Faizah Aplop, Gregory Butler
Software Mentions: 2
Published: over 4 years ago

10.1186/s12896-019-0529-3

Genome-wide sequencing and metabolic annotation of Pythium irregulare CBS 494.86: understanding Eicosapentaenoic acid production
Cited by: 5
Author(s): Bruna Soares Fernandes, Óscar Dias, Gisela Lara da Costa, Antonio A Kaupert Neto, Tiago Resende, Juliana Velasco Castro de Oliveira, Diego Mauricio Riaño‐Pachón, Marcelo Zaiat, José Geraldo da Cruz Pradella, Isabel Rocha
Software Mentions: 2
Published: about 5 years ago

10.1186/1471-2164-15-810

Genome-wide metabolic re-annotation of Ashbya gossypii: new insights into its metabolism through a comparative analysis with Saccharomyces cerevisiae and Kluyveromyces lactis
Cited by: 12
Author(s): Daniel Gonçalves Gomes, Tatiana Quinta Aguiar, Óscar Dias, Eugénio C. Ferreira, Lucı́lia Domingues, Isabel Rocha
Software Mentions: 2
Published: almost 10 years ago

10.1186/s12881-018-0622-9

Identification of ANKDD1B variants in an ankylosing spondylitis pedigree and a sporadic patient
Cited by: 6
Author(s): Zhiping Tan, Hui Zeng, Zhenbo Xu, Qi Tian, Xiaotong Gao, Chuanman Zhou, Yu Zheng, Jian Wang, Guanghui Ling, Bing Wang, Yifeng Yang, Long Ma
Software Mentions: 2
Published: about 6 years ago

10.1186/s12859-019-3038-4

SamPler – a novel method for selecting parameters for gene functional annotation routines
Cited by: 4
Author(s): Fernando Cruz, Davide Rafael Santos Lagoa, João Mendes, Isabel Rocha, Eugénio C. Ferreira, Miguel Rocha, Óscar Dias
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0115020

Structure Based Annotation of Helicobacter pylori Strain 26695 Proteome
Cited by: 3
Author(s): Swati Singh, Praveen Kumar Guttula, Lalitha Guruprasad
Software Mentions: 2
Published: over 9 years ago

10.3389/fmicb.2019.01283

iDS372, a Phenotypically Reconciled Model for the Metabolism of Streptococcus pneumoniae Strain R6
Cited by: 12
Author(s): Óscar Dias, J. Saraiva, Cristiana Faria, Mário Ramirez, Francisco Pinto, Isabel Rocha
Software Mentions: 2
Published: about 5 years ago

10.1038/srep26362

Exome Sequencing and Gene Prioritization Correct Misdiagnosis in a Chinese Kindred with Familial Amyloid Polyneuropathy
Cited by: 8
Author(s): Hui Chen, Xueya Zhou, Jing Wang, Xi Wang, Liyang Liu, Shi-Nan Wu, Tengyan Li, Si Chen, Jingwen Yang, Pak C. Sham, Guangming Zhu, Xuegong Zhang, Binbin Wang
Software Mentions: 2
Published: over 8 years ago