Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: merlin
https://packages.ecosyste.ms/registries/pypi.org/packages/merlin
The building blocks of workflows!
33 versions
Latest release: about 1 year ago
2,387 downloads last month
Papers Mentioning merlin 18
10.1186/s13059-021-02295-1
gapseq: informed prediction of bacterial metabolic pathways and reconstruction of accurate metabolic modelsCited by: 77
Author(s): Johannes Zimmermann, Christoph Kaleta, Silvio Waschina
Software Mentions: 18
Published: over 3 years ago
10.1186/s12874-020-01192-8
Relaxing the assumption of constant transition rates in a multi-state model in hospital epidemiologyCited by: 3
Author(s): Martha Hill, Paul C. Lambert, Michael J. Crowther
Software Mentions: 6
Published: almost 4 years ago
10.1186/1755-8794-1-23
A genome-wide search replicates evidence of a quantitative trait locus for circulating angiotensin I-converting enzyme (ACE) unlinked to the ACE geneCited by: 9
Author(s): Colin A. McKenzie, Xiaofeng Zhu, Terrence Forrester, Amy Luke, Adebowale Adeyemo, Nourdine Bouzekri, Richard S. Cooper
Software Mentions: 5
Published: over 16 years ago
10.1371/journal.pone.0116920
Investigating the Genetics of Hippocampal Volume in Older Adults without DementiaCited by: 9
Author(s): Karen A. Mather, Nicola J. Armstrong, Wen Wang, John B. Kwok, Amelia A. Assareh, Anbupalam Thalamuthu, Simone Reppermund, Konsta Duesing, Margaret J. Wright, David Ames, Julian N. Trollor, Henry Brodaty, Peter R. Schofield, Perminder S. Sachdev
Software Mentions: 4
Published: almost 10 years ago
10.3390/ijms20081996
Two Sides of the Coin: Ezrin/Radixin/Moesin and Merlin Control Membrane Structure and Contact InhibitionCited by: 45
Author(s): Katharine A. Michie, Adam Bermeister, Neil O. Robertson, Sophia C. Goodchild, Paul M. G. Curmi
Software Mentions: 3
Published: over 5 years ago
10.1186/1471-2164-13-517
Genome-wide metabolic (re-) annotation of Kluyveromyces lactisCited by: 16
Author(s): Óscar Dias, Andreas Gombert, Eugénio C. Ferreira, Isabel Rocha
Software Mentions: 3
Published: about 12 years ago
10.1111/stan.12188
Mixed‐effects models for health care longitudinal data with an informative visiting process: A Monte Carlo simulation studyCited by: 17
Author(s): Alessandro Gasparini, Keith R. Abrams, Jessica Barrett, Rupert Major, Michael Sweeting, Nigel J. Brunskill, Michael J. Crowther
Software Mentions: 3
Published: about 5 years ago
10.3390/jof6030171
Genome-Scale Metabolic Model of the Human Pathogen Candida albicans: A Promising Platform for Drug Target PredictionCited by: 11
Author(s): Romeu Viana, Óscar Dias, Davide Rafael Santos Lagoa, Mónica Galocha, Isabel Rocha, Miguel C. Teixeira
Software Mentions: 3
Published: about 4 years ago
10.1038/s41598-017-15705-x
Leveraging genome characteristics to improve gene discovery for putamen subcortical brain structureCited by: 15
Author(s): Chi‐Hua Chen, Yunpeng Wang, Min‐Tzu Lo, Andrew J. Schork, Chun Chieh Fan, Dominic Holland, Karolina Kauppi, Olav B. Smeland, Srdjan Djurovic, Nilotpal Sanyal, Derrek P. Hibar, Paul M. Thompson, Wesley K. Thompson, Ole A. Andreassen, Anders M. Dale
Software Mentions: 2
Published: almost 7 years ago
10.1371/journal.pone.0227683
TranCEP: Predicting the substrate class of transmembrane transport proteins using compositional, evolutionary, and positional informationCited by: 16
Author(s): Munira Alballa, Faizah Aplop, Gregory Butler
Software Mentions: 2
Published: almost 5 years ago
10.1186/s12896-019-0529-3
Genome-wide sequencing and metabolic annotation of Pythium irregulare CBS 494.86: understanding Eicosapentaenoic acid productionCited by: 5
Author(s): Bruna Soares Fernandes, Óscar Dias, Gisela Lara da Costa, Antonio A Kaupert Neto, Tiago Resende, Juliana Velasco Castro de Oliveira, Diego Mauricio Riaño‐Pachón, Marcelo Zaiat, José Geraldo da Cruz Pradella, Isabel Rocha
Software Mentions: 2
Published: over 5 years ago
10.1186/1471-2164-15-810
Genome-wide metabolic re-annotation of Ashbya gossypii: new insights into its metabolism through a comparative analysis with Saccharomyces cerevisiae and Kluyveromyces lactisCited by: 12
Author(s): Daniel Gonçalves Gomes, Tatiana Quinta Aguiar, Óscar Dias, Eugénio C. Ferreira, Lucı́lia Domingues, Isabel Rocha
Software Mentions: 2
Published: about 10 years ago
10.1186/s12881-018-0622-9
Identification of ANKDD1B variants in an ankylosing spondylitis pedigree and a sporadic patientCited by: 6
Author(s): Zhiping Tan, Hui Zeng, Zhenbo Xu, Qi Tian, Xiaotong Gao, Chuanman Zhou, Yu Zheng, Jian Wang, Guanghui Ling, Bing Wang, Yifeng Yang, Long Ma
Software Mentions: 2
Published: over 6 years ago
10.1186/s12859-019-3038-4
SamPler – a novel method for selecting parameters for gene functional annotation routinesCited by: 4
Author(s): Fernando Cruz, Davide Rafael Santos Lagoa, João Mendes, Isabel Rocha, Eugénio C. Ferreira, Miguel Rocha, Óscar Dias
Software Mentions: 2
Published: about 5 years ago
10.1371/journal.pone.0115020
Structure Based Annotation of Helicobacter pylori Strain 26695 ProteomeCited by: 3
Author(s): Swati Singh, Praveen Kumar Guttula, Lalitha Guruprasad
Software Mentions: 2
Published: almost 10 years ago
10.3389/fmicb.2019.01283
iDS372, a Phenotypically Reconciled Model for the Metabolism of Streptococcus pneumoniae Strain R6Cited by: 12
Author(s): Óscar Dias, J. Saraiva, Cristiana Faria, Mário Ramirez, Francisco Pinto, Isabel Rocha
Software Mentions: 2
Published: over 5 years ago
10.1038/srep26362
Exome Sequencing and Gene Prioritization Correct Misdiagnosis in a Chinese Kindred with Familial Amyloid PolyneuropathyCited by: 8
Author(s): Hui Chen, Xueya Zhou, Jing Wang, Xi Wang, Liyang Liu, Shi-Nan Wu, Tengyan Li, Si Chen, Jingwen Yang, Pak C. Sham, Guangming Zhu, Xuegong Zhang, Binbin Wang
Software Mentions: 2
Published: over 8 years ago