Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: CUB

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/CUB

A Class of Mixture Models for Ordinal Data
8 versions
Latest release: over 4 years ago
1 dependent package
211 downloads last month

Papers Mentioning CUB 18

Benchmarking microbial growth rate predictions from metagenomes
Cited by: 45
Author(s): Andrew M. Long, Songjun Hou, J. Cesar Ignacio‐Espinoza, Jed A. Fuhrman
Software Mentions: 5
Published: about 4 years ago

10.1038/s41598-019-46622-w

GPU-Accelerated GLRLM Algorithm for Feature Extraction of MRI
Cited by: 20
Author(s): Hanyu Zhang, Che Lun Hung, Geyong Min, Jhih Peng Guo, Meiyuan Liu, Xiaoye Hu
Software Mentions: 3
Published: over 5 years ago

10.1186/s40064-016-2284-4

CudaChain: an alternative algorithm for finding 2D convex hulls on the GPU
Cited by: 6
Author(s): Gang Mei
Software Mentions: 2
Published: over 8 years ago

10.1038/srep14767

p38 MAPK regulates PKAα and CUB-serine protease in Amphibalanus amphitrite cyprids
Cited by: 5
Author(s): Gen Zhang, Lisheng He, Yue Him Wong, Ying Xü, Yu Zhang, Pei‐Yuan Qian
Software Mentions: 2
Published: about 9 years ago

10.1186/s12859-016-1244-x

rapidGSEA: Speeding up gene set enrichment analysis on multi-core CPUs and CUDA-enabled GPUs
Cited by: 1
Author(s): Christian Hundt, Andreas Hildebrandt, Bertil Schmidt
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pgen.1002603

Balanced Codon Usage Optimizes Eukaryotic Translational Efficiency
Cited by: 257
Author(s): Wenfeng Qian, Jian Yang, Nathaniel M. Pearson, Calum J. Maclean, Jianzhi Zhang
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0054088

Recognizing Sights, Smells, and Sounds with Gnostic Fields
Cited by: 9
Author(s): Christopher Kanan
Software Mentions: 1
Published: almost 12 years ago

10.3390/diseases5010005

Substrate Deprivation Therapy to Reduce Glycosaminoglycan Synthesis Improves Aspects of Neurological and Skeletal Pathology in MPS I Mice
Cited by: 15
Author(s): Ainslie L.K. Derrick-Roberts, Matilda R. Jackson, Carmen E. Pyragius, Sharon Byers
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2020.607693

Modification of Transfer RNA Levels Affects Cyclin Aggregation and the Correct Duplication of Yeast Cells
Cited by: 1
Author(s): Loreto Arias, Fernando de la Iglesia Martínez, Daniela González, Rodrigo Flores-Ríos, Assaf Katz, Mario Tello, Sandra Moreira, Omar Orellana
Software Mentions: 1
Published: almost 4 years ago

10.1534/g3.114.011262

Sensory Rewiring in an Echolocator: Genome-Wide Modification of Retinogenic and Auditory Genes in the Bat Myotis davidii
Cited by: 5
Author(s): Nicholas J. Hudson, Michelle L. Baker, Nathan S. Hart, James W. Wynne, Quan Gu, Zhiyong Huang, Guojie Zhang, Aaron Ingham, Lin‐Fa Wang, Antônio Reverter
Software Mentions: 1
Published: about 10 years ago

10.3390/genes6041125

Analysis of Codon Usage Patterns in Herbaceous Peony (Paeonia lactiflora Pall.) Based on Transcriptome Data
Cited by: 43
Author(s): Yanqing Wu, Daqiu Zhao, Jun Tao
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-14543-1

Somatic mutation driven codon transition bias in human cancer
Cited by: 8
Author(s): Hyeonju Son, Hyundeok Kang, Hyun‐Seok Kim, Sang Woo Kim
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms17081304

Genome-Wide Analysis of the Synonymous Codon Usage Patterns in Riemerella anatipestifer
Cited by: 23
Author(s): Ji‐Bin Liu, Dekang Zhu, Guangqiang Ma, Mafeng Liu, Mingshu Wang, Renyong Jia, Shun Chen, Kunfeng Sun, Qiao Yang, Ying Wu, Xiaoyue Chen, Anchun Cheng
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms19103142

Differences in Codon Usage Bias between Photosynthesis-Related Genes and Genetic System-Related Genes of Chloroplast Genomes in Cultivated and Wild Solanum Species
Cited by: 43
Author(s): Ruizhi Zhang, Li Zhang, Wei Wang, Zhiliang Zhu, Huihui Du, Zhong Qu, Xiuqing Li, Heng Xiang
Software Mentions: 1
Published: about 6 years ago

10.1186/1471-2105-10-206

Representative transcript sets for evaluating a translational initiation sites predictor
Cited by: 1
Author(s): Jia Zeng, Reda Alhajj, Douglas J. Demetrick
Software Mentions: 1
Published: over 15 years ago

10.1186/s12864-017-4248-7

Significant differences in terms of codon usage bias between bacteriophage early and late genes: a comparative genomics analysis
Cited by: 19
Author(s): Oriah Mioduser, Eli Goz, Tamir Tuller
Software Mentions: 1
Published: about 7 years ago

10.1093/braincomms/fcab027

Sign-specific stimulation ‘hot’ and ‘cold’ spots in Parkinson’s disease validated with machine learning
Cited by: 18
Author(s): Alexandre Boutet, Jürgen Germann, Dave Gwun, Aaron Loh, Gavin J B Elias, Clemens Neudorfer, Michelle Paff, Joachim K. Krauss, Andrea A. Kühn, Renato P. Munhoz, Suneil K. Kalia, Mojgan Hodaie, Walter Kucharczyk, Alfonso Fasano, Andrés M. Lozano
Software Mentions: 1
Published: over 3 years ago

10.1186/s13071-014-0527-1

Analysis of codon usage pattern in Taenia saginata based on a transcriptome dataset
Cited by: 76
Author(s): Xingxing Yang, Xin Luo, Xuepeng Cai
Software Mentions: 1
Published: almost 10 years ago