Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: pynast
https://packages.ecosyste.ms/registries/pypi.org/packages/pynast
The Python Nearest Alignment Space Termination tool
2 versions
Latest release: almost 11 years ago
58 downloads last month
Papers Mentioning pynast 18
10.1038/s41598-017-11514-4
Microbial communities in placentas from term normal pregnancy exhibit spatially variable profilesCited by: 121
Author(s): Lindsay A. Parnell, Catherine Briggs, Bin Cao, Omar Delannoy-Bruno, Andrew E. Schrieffer, Indira U. Mysorekar
Software Mentions: 16
Published: about 7 years ago
10.3389/fgene.2020.489357
Cascabel: A Scalable and Versatile Amplicon Sequence Data Analysis Pipeline Delivering Reproducible and Documented ResultsCited by: 13
Author(s): Alejandro Abdala Asbun, Marc Besseling, Sergio Balzano, Judith van Bleijswijk, Harry J. Witte, Laura Villanueva, Julia C. Engelmann
Software Mentions: 11
Published: about 4 years ago
10.1093/gigascience/giz146
Systematic processing of ribosomal RNA gene amplicon sequencing dataCited by: 45
Author(s): Julien Tremblay, Étienne Yergeau
Software Mentions: 10
Published: almost 5 years ago
10.1128/mBio.01432-18
A Natural History of Actinic Keratosis and Cutaneous Squamous Cell Carcinoma MicrobiomesCited by: 31
Author(s): David Wood, Nancy Lachner, Jean-Marie Tan, Stephanie Tang, Nicola Angel, Antonia Laino, Richard Linedale, Kim‐Anh Lê Cao, Mark Morrison, Ian H. Frazer, H. Peter Soyer, Philip Hugenholtz
Software Mentions: 7
Published: about 6 years ago
10.1371/journal.pone.0169339
Comparison of bacterial communities from lava cave microbial mats to overlying surface soils from Lava Beds National Monument, USACited by: 51
Author(s): Kathleen H. Lavoie, Ara S. Winter, Kaitlyn J. H. Read, Evan M. Hughes, M. Spilde, Diana E. Northup
Software Mentions: 6
Published: almost 8 years ago
10.1186/s12917-020-02660-5
Subgingival microbiota of dogs with healthy gingiva or early periodontal disease from different geographical locationsCited by: 12
Author(s): Corrin Wallis, Lisa Milella, Alison Colyer, Ciaran O’Flynn, Stephen Harris, Lucy J. Holcombe
Software Mentions: 5
Published: almost 4 years ago
10.1111/1574-6941.12362
Bacterial community structure and soil properties of a subarctic tundra soil in Council, AlaskaCited by: 100
Author(s): Hye Min Kim, Jae Chang Jung, Étienne Yergeau, Chung Yeon Hwang, L. D. Hinzman, Sang Heon Nam, Soon Gyu Hong, Ok-Sun Kim, Jongsik Chun, Yoo Kyung Lee
Software Mentions: 4
Published: over 10 years ago
10.1186/s40168-017-0356-5
Indoor microbiota in severely moisture damaged homes and the impact of interventionsCited by: 38
Author(s): Balamuralikrishna Jayaprakash, Rachel I. Adams, Pirkka V. Kirjavainen, Anne M. Karvonen, Asko Vepsäläinen, Maria Valkonen, Kati Järvi, Michael Sulyok, Juha Pekkanen, Anne Hyvärinen, Martin Täubel
Software Mentions: 4
Published: about 7 years ago
10.1111/1751-7915.12298
Characterization of microbial community structure during continuous anaerobic digestion of straw and cow manureCited by: 181
Author(s): Li Sun, Phillip B. Pope, Vincent G. H. Eijsink, Anna Schnürer
Software Mentions: 3
Published: over 9 years ago
10.1186/s40168-017-0276-4
Symbionts in waiting: the dynamics of incipient endosymbiont complementation and replacement in minimal bacterial communities of psyllidsCited by: 43
Author(s): Jennifer L. Morrow, Aidan A. G. Hall, Markus Riegler
Software Mentions: 3
Published: over 7 years ago
10.1038/s41598-017-08683-7
Effects of contaminants of emerging concern on Megaselia scalaris (Lowe, Diptera: Phoridae) and its microbial communityCited by: 18
Author(s): Marcus J. Pennington, Jason A. Rothman, Michael B. Jones, Quinn S. McFrederick, Jay Gan, John T. Trumble
Software Mentions: 3
Published: over 7 years ago
10.1186/s40168-018-0405-8
Crawling-induced floor dust resuspension affects the microbiota of the infant breathing zoneCited by: 36
Author(s): Heidi Hyytiäinen, Balamuralikrishna Jayaprakash, Pirkka V. Kirjavainen, Sampo Saari, Rauno Holopainen, Jorma Keskinen, Kaarle Hämeri, Anne Hyvärinen, Brandon E. Boor, Martin Täubel
Software Mentions: 3
Published: almost 7 years ago
10.1002/ece3.5801
Abdominal microbial communities in ants depend on colony membership rather than caste and are linked to colony productivityCited by: 20
Author(s): Francisca H. I. D. Segers, Martin Kaltenpoth, Susanne Foitzik
Software Mentions: 3
Published: about 5 years ago
10.1038/srep26621
Metagenomic sequencing reveals the relationship between microbiota composition and quality of Chinese Rice WineCited by: 104
Author(s): Xutao Hong, Jing Chen, Lin Liu, Huan Wu, Hai-Qin Tan, Guangfa Xie, Qian Xu, Huijun Zhang, Wenjing Yu, Lan Wang, Nan Qin
Software Mentions: 2
Published: over 8 years ago
10.7717/peerj.10372
Different analysis strategies of 16S rRNA gene data from rodent studies generate contrasting views of gut bacterial communities associated with diet, health and obesityCited by: 6
Author(s): José F. García-Mazcorro, Jorge R. Kawas, Cuauhtémoc Licona-Cassani, Susanne U. Mertens‐Talcott, Giuliana Noratto
Software Mentions: 2
Published: about 4 years ago
10.1186/s12866-021-02141-1
The lung microbiota in Korean patients with non-tuberculous mycobacterial pulmonary diseaseCited by: 2
Author(s): Sung Yoon Kang, Hyojung Kim, Sungwon Jung, Sang Min Lee, Sang Pyo Lee
Software Mentions: 1
Published: over 3 years ago
10.3389/fmicb.2017.00834
A Phloem-Feeding Insect Transfers Bacterial Endophytic Communities between Grapevine PlantsCited by: 48
Author(s): Sebastiàn Lòpez-Fernàndez, Valerio Mazzoni, F. Pedrazzoli, I. Pertot, A. Campisano
Software Mentions: 1
Published: over 7 years ago
10.3389/fphar.2021.695035
Efficacy of Zhuyu Pill Intervention in a Cholestasis Rat Model: Mutual Effects on Fecal Metabolism and Microbial DiversityCited by: 9
Author(s): Han Yu, Chao Liu, Fenghua Zhang, Jianfei Wang, Jun Han, Xin Zhou, Yan Wen, Tao Shen
Software Mentions: 1
Published: about 3 years ago