Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: PyML
https://packages.ecosyste.ms/registries/pypi.org/packages/PyML
A python HTML builder library.
4 versions
Latest release: about 3 years ago
100 downloads last month
Papers Mentioning PyML 18
10.1371/journal.pcbi.1000173
Support Vector Machines and Kernels for Computational BiologyCited by: 526
Author(s): Asa Ben-Hur, Cheng Soon Ong, Sören Sonnenburg, Bernhard Schölkopf, Gunnar Rätsch
Software Mentions: 3
Published: about 16 years ago
10.1038/s41598-017-11746-4
CScape: a tool for predicting oncogenic single-point mutations in the cancer genomeCited by: 41
Author(s): Mark F. Rogers, Hashem A. Shihab, Tom R. Gaunt, Colin Campbell
Software Mentions: 2
Published: over 7 years ago
10.1371/journal.pcbi.1002632
An Online Bioinformatics CurriculumCited by: 18
Author(s): David B. Searls
Software Mentions: 2
Published: over 12 years ago
10.1371/journal.pcbi.0040027
Why is Real-World Visual Object Recognition Hard?Cited by: 490
Author(s): Nicolas Pinto, David D. Cox, James J. DiCarlo
Software Mentions: 2
Published: almost 17 years ago
10.1371/journal.pone.0066279
SVM-Based Prediction of Propeptide Cleavage Sites in Spider Toxins Identifies Toxin Innovation in an Australian TarantulaCited by: 31
Author(s): Emily S. Wong, Margaret H. Hardy, David Wood, Timothy L. Bailey, Glenn F. King
Software Mentions: 2
Published: over 11 years ago
10.1038/s41426-018-0116-z
Landscape of the genome and host cell response of <i>Mycobacterium shigaense</i> reveals pathogenic featuresCited by: 3
Author(s): Hua Jiang, Jiya Sun, Yanqing Chen, Zhiming Chen, Le Wang, Wei Gao, Ying Shi, Wenyue Zhang, You-Ming Mei, Santosh Chokkakula, Varalakshmi Vissa, Taijiao Jiang, Aiping Wu, Hongsheng Wang
Software Mentions: 2
Published: over 6 years ago
10.1186/gb-2012-13-1-r4
SpliceGrapher: detecting patterns of alternative splicing from RNA-Seq data in the context of gene models and EST dataCited by: 126
Author(s): Mark F. Rogers, Julie A. Thomas, Anireddy S. N. Reddy, Asa Ben-Hur
Software Mentions: 2
Published: almost 13 years ago
10.1186/s13742-015-0082-5
A close look at protein function prediction evaluation protocolsCited by: 18
Author(s): Indika Kahanda, Christopher Funk, Fahad Ullah, Karin Verspoor, Asa Ben‐Hur
Software Mentions: 2
Published: over 9 years ago
10.1186/1471-2164-13-372
Cell-type specificity of ChIP-predicted transcription factor binding sitesCited by: 16
Author(s): Tony Håndstad, Morten Rye, Rok Močnik, Finn Drabløs, Pål Sætrom
Software Mentions: 2
Published: over 12 years ago
10.15252/msb.20209600
Network‐based visualisation reveals new insights into transposable element diversityCited by: 1
Author(s): Laura Schneider, Yike Guo, David Birch, Peter Sarkies
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pcbi.1000054
Predicting Co-Complexed Protein Pairs from Heterogeneous DataCited by: 71
Author(s): Jian Qiu, William Stafford Noble
Software Mentions: 2
Published: over 16 years ago
10.1093/bioinformatics/btv133
14-3-3-Pred: improved methods to predict 14-3-3-binding phosphopeptidesCited by: 169
Author(s): Fábio Madeira, Michele Tinti, Gavuthami Murugesan, Emily Berrett, Margaret J. Stafford, Rachel Toth, Christian Callebaut, Carol MacKintosh, Geoffrey J. Barton
Software Mentions: 1
Published: almost 10 years ago
10.1093/bioinformatics/bts416
Multiple instance learning of Calmodulin binding sitesCited by: 31
Author(s): Fayyaz Minhas, Asa Ben‐Hur
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0174052
Discriminating between HuR and TTP binding sites using the k-spectrum kernel methodCited by: 13
Author(s): Shweta Bhandare, Debra S. Goldberg, Robin D. Dowell
Software Mentions: 1
Published: almost 8 years ago
10.1186/s13104-015-1082-3
Streptophyte phytochromes exhibit an N-terminus of cyanobacterial origin and a C-terminus of proteobacterial originCited by: 15
Author(s): Thorsten Buchberger, Tilman Lamparter
Software Mentions: 1
Published: over 9 years ago
10.12688/f1000research.6670.1
PHENOstruct: Prediction of human phenotype ontology terms using heterogeneous data sourcesCited by: 28
Author(s): Indika Kahanda, Christopher Funk, Karin Verspoor, Asa Ben-Hur
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pcbi.1005465
Amino acid composition predicts prion activityCited by: 27
Author(s): Fayyaz Minhas, Eric D. Ross, Asa Ben-Hur
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0027382
Sequence-Based Classification Using Discriminatory Motif Feature SelectionCited by: 6
Author(s): Hao Xiong, Daniel Capurso, Śaunak Sen, Mark R. Segal
Software Mentions: 1
Published: about 13 years ago