Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: CrispRVariants

https://packages.ecosyste.ms/registries/bioconductor.org/packages/CrispRVariants

Tools for counting and visualising mutations in a target location
1 version
Latest release: about 1 year ago
14,959 downloads total

Papers Mentioning CrispRVariants 18

10.3389/fonc.2020.584404

In silico Method in CRISPR/Cas System: An Expedite and Powerful Booster
Cited by: 6
Author(s): Yuwei Zhang, Guofang Zhao, Fatma Ahmed, Tianfei Yi, Shiyun Hu, Ting Cai, Qi Liao
Software Mentions: 11
Published: about 4 years ago

10.1371/journal.pone.0226694

AlleleProfileR: A versatile tool to identify and profile sequence variants in edited genomes
Cited by: 4
Author(s): Arne A.N. Bruyneel, Alexandre R. Colas, Ioannis Karakikes, Mark Mercola
Software Mentions: 9
Published: almost 5 years ago

10.3390/cells9051288

Computational Tools and Resources Supporting CRISPR-Cas Experiments
Cited by: 34
Author(s): Paweł Śledziński, Mateusz Nowaczyk, Marta Olejniczak
Software Mentions: 5
Published: over 4 years ago

10.1038/s42003-019-0517-0

Essential genes shape cancer genomes through linear limitation of homozygous deletions
Cited by: 12
Author(s): Maroulio Pertesi, Ludvig Ekdahl, Angelica A. Palm, Ellinor Johnsson, Linnea Järvstråt, Anna Karin Wihlborg, Björn Nilsson
Software Mentions: 3
Published: over 5 years ago

10.1016/j.molcel.2018.11.031

Target-Specific Precision of CRISPR-Mediated Genome Editing
Cited by: 165
Author(s): Anob M. Chakrabarti, Tristan Henser-Brownhill, Josep Monserrat, Anna R. Poetsch, Nicholas M. Luscombe, Paola Scaffidi
Software Mentions: 2
Published: almost 6 years ago

10.1242/dmm.034561

Cancer modeling by Transgene Electroporation in Adult Zebrafish (TEAZ)
Cited by: 37
Author(s): Scott J. Callahan, Stephanie Tepan, Yan M. Zhang, Helen Lindsay, Alexa Burger, Nathaniel R. Campbell, Isabella S. Kim, Travis J. Hollmann, Lorenz Studer, Christian Mosimann, Richard M. White
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-018-24036-4

A Rapid CRISPR/Cas-based Mutagenesis Assay in Zebrafish for Identification of Genes Involved in Thyroid Morphogenesis and Function
Cited by: 43
Author(s): Achim Trubiroha, Pierre Gillotay, Nicoletta Giusti, David Gacquer, Frédérick Libert, Anne Lefort, Benoît Haerlingen, Xavier De Deken, Robert Opitz, Sabine Costagliola
Software Mentions: 2
Published: over 6 years ago

10.7150/ijbs.37152

Evaluation of the effects of sequence length and microsatellite instability on single-guide RNA activity and specificity
Cited by: 7
Author(s): Changzhi Zhao, Yunlong Wang, Xiongwei Nie, Xiaosong Han, Hailong Liu, Guanglei Li, Gaojuan Yang, Jinxue Ruan, Yunlong Ma, Xinyun Li, Hui‐Ling Cheng, Shuhong Zhao, Yaping Fang, Shengsong Xie
Software Mentions: 2
Published: almost 6 years ago

10.7554/eLife.20728

Oncogenic BRAF disrupts thyroid morphogenesis and function via twist expression
Cited by: 46
Author(s): Viviana Anelli, Jacques A. Villefranc, Sagar Chhangawala, Raúl Martinez-McFaline, Eleonora Riva, Anvy Nguyen, Akanksha Verma, Rohan Bareja, Zhengming Chen, Theresa Scognamiglio, Olivier Elemento, Yariv Houvras
Software Mentions: 2
Published: over 7 years ago

10.7554/eLife.33761

Covalent linkage of the DNA repair template to the CRISPR-Cas9 nuclease enhances homology-directed repair
Cited by: 116
Author(s): Nataša Savić, Femke Ringnalda, Helen Lindsay, Christian Berk, Katja Bargsten, Yizhou Li, Dario Neri, Mark D. Robinson, Constance Ciaudo, Jonathan Hall, Martin Jínek, Gerald Schwank
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-017-04686-6

CRISPR-Cas9 targeted disruption of the yellow ortholog in the housefly identifies the brown body locus
Cited by: 28
Author(s): Svenia Heinze, Tea Kohlbrenner, Domenica Ippolito, Angela Meccariello, Alexa Burger, Christian Mosimann, Giuseppe Saccone, Daniel Bopp
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-020-78264-8

Evaluation of mutation rates, mosaicism and off target mutations when injecting Cas9 mRNA or protein for genome editing of bovine embryos
Cited by: 22
Author(s): Sadie L. Hennig, Joseph R. Owen, Jason Lin, Amy Young, Pablo J. Ross, Alison L. Van Eenennaam, James D. Murray
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-020-59119-8

Quantifying Hematopoietic Stem Cell Clonal Diversity by Selecting Informative Amplicon Barcodes
Cited by: 4
Author(s): Emily M Teets, Charles T. Gregory, Jami Shaffer, James S. Blachly, Bradley W. Blaser
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-72902-x

Harnessing endogenous repair mechanisms for targeted gene knock-in of bovine embryos
Cited by: 5
Author(s): Joseph R. Owen, Sadie L. Hennig, Bret R. McNabb, Jason Lin, Amy Young, James D. Murray, Pablo J. Ross, Alison L. Van Eenennaam
Software Mentions: 1
Published: about 4 years ago

10.1242/dmm.033027

Neutrophil-specific knockout demonstrates a role for mitochondria in regulating neutrophil motility in zebrafish
Cited by: 47
Author(s): Wenqing Zhou, Lingyan Cao, Jacob Jeffries, Xiaodong Zhu, Christopher J. Staiger, Qing Deng
Software Mentions: 1
Published: almost 7 years ago

10.1038/s42003-021-02304-w

Precise CAG repeat contraction in a Huntington’s Disease mouse model is enabled by gene editing with SpCas9-NG
Cited by: 15
Author(s): Seiya Oura, Taichi Noda, Naoko Morimura, Seiji Hitoshi, Hiroshi Nishimasu, Yoshitaka Nagai, Osamu Nureki, Masahito Ikawa
Software Mentions: 1
Published: over 3 years ago

10.1534/g3.119.400544

Specific Gene Disruption in the Major Livestock Pests<i>Cochliomyia hominivorax</i>and<i>Lucilia cuprina</i>Using CRISPR/Cas9
Cited by: 30
Author(s): Daniel F. Paulo, Megan E Williamson, Alex P. Arp, Fang Li, Agustin Sagel, S. Skoda, Joel Sanchez-Gallego, Mario Vasquez, Gladys Quintero, Adalberto A Pérez de León, Esther J. Belikoff, Ana Maria Lima de Azeredo-Espin, W. Owen McMillan, Carolina Concha, Maxwell J. Scott
Software Mentions: 1
Published: about 5 years ago

10.1242/jcs.258897

Condensation of pericentrin proteins in human cells illuminates phase separation in centrosome assembly
Cited by: 24
Author(s): Xueer Jiang, Dac Bang Tam Ho, Karan Mahe, Jennielee Mia, Guadalupe Sepulveda, Mark Antkowiak, L. Jiang, Sōichiro Yamada, Li En Jao
Software Mentions: 1
Published: over 3 years ago