Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: GenomeDiagram

https://packages.ecosyste.ms/registries/pypi.org/packages/GenomeDiagram

Genome and Biological Sequence Schematic Diagram Library
1 version
Latest release: over 1 year ago

Papers Mentioning GenomeDiagram 18

10.1371/journal.pntd.0006566

Long-read whole genome sequencing and comparative analysis of six strains of the human pathogen Orientia tsutsugamushi
Cited by: 32
Author(s): Elizabeth M. Batty, Suwittra Chaemchuen, Stuart D. Blacksell, Allen L. Richards, Daniel Paris, Rory Bowden, Caroline Chan, Ramkumar Lachumanan, Nicholas P. J. Day, Peter Donnelly, Swaine L. Chen, Jeanne Salje
Software Mentions: 6
Published: over 6 years ago

10.1038/s42003-018-0094-7

Evidence of non-tandemly repeated rDNAs and their intragenomic heterogeneity in Rhizophagus irregularis
Cited by: 53
Author(s): Taro Maeda, Yuuki Kobayashi, Hiromu Kameoka, Nao Okuma, Nobuo Takeda, Katsushi Yamaguchi, Takahiro Bino, Shuji Shigenobu, Masayoshi Kawaguchi
Software Mentions: 5
Published: over 6 years ago

10.1186/1471-2164-14-918

POMO - Plotting Omics analysis results for Multiple Organisms
Cited by: 3
Author(s): Jake Lin, Richard Kreisberg, Aleksi Kallio, Andrew T. Dudley, Matti Nykter, Ilya Shmulevich, Patrick May, Reija Autio
Software Mentions: 4
Published: almost 12 years ago

10.1093/bioinformatics/btt294

SVGenes: a library for rendering genomic features in scalable vector graphic format
Cited by: 2
Author(s): Graham J. Etherington, Dan MacLean
Software Mentions: 4
Published: over 11 years ago

10.1038/srep26090

The nitrogen responsive transcriptome in potato (Solanum tuberosum L.) reveals significant gene regulatory motifs
Cited by: 31
Author(s): José Héctor Gálvez, Helen H. Tai, M. Lagüe, Bernie J. Zebarth, Martina V. Strömvik
Software Mentions: 3
Published: over 8 years ago

10.1186/s40168-019-0649-y

MetaCHIP: community-level horizontal gene transfer identification through the combination of best-match and phylogenetic approaches
Cited by: 56
Author(s): Weizhi Song, Bernd Wemheuer, Shan Zhang, Kerrin Steensen, Torsten Thomas
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pcbi.1000473

Microarray Comparative Genomic Hybridisation Analysis Incorporating Genomic Organisation, and Application to Enterobacterial Plant Pathogens
Cited by: 9
Author(s): Leighton Pritchard, Hui Liu, Clare Booth, Emma Douglas, Patrice François, Jacques Schrenzel, Pete E. Hedley, Paul R. J. Birch, Ian K. Toth
Software Mentions: 3
Published: over 15 years ago

10.1128/mBio.01903-17

Bacteriophage Distributions and Temporal Variability in the Ocean’s Interior
Cited by: 52
Author(s): Elaine Luo, Frank O. Aylward, Daniel R. Mende, Edward F. DeLong
Software Mentions: 2
Published: almost 7 years ago

10.1186/1471-2164-15-404

Analysis of the Pantoea ananatis pan-genome reveals factors underlying its ability to colonize and interact with plant, insect and vertebrate hosts
Cited by: 93
Author(s): Pieter De Maayer, Wai Chan, Enrico Rubagotti, Stephanus N. Venter, Ian K. Toth, Paul R. J. Birch, Teresa A. Coutinho
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0040683

Novel Bacteriophages Containing a Genome of Another Bacteriophage within Their Genomes
Cited by: 44
Author(s): M. M. Swanson, B. Reavy, Kira S. Makarova, Peter J. A. Cock, D. W. Hopkins, L. Torrance, Eugene V. Koonin, Michael Taliansky
Software Mentions: 2
Published: over 12 years ago

10.1186/1471-2164-8-355

Genetic diversity of the obligate intracellular bacterium Chlamydophila pneumoniae by genome-wide analysis of single nucleotide polymorphisms: evidence for highly clonal population structure
Cited by: 26
Author(s): Thomas Rattei, Stephan Ott, Michaela Gutacker, Jan Rupp, Matthias Maass, Stefan Schreiber, Werner Solbach, Thierry Wirth, Jens Gieffers
Software Mentions: 1
Published: about 17 years ago

10.1371/journal.pone.0177234

Genome Partitioner: A web tool for multi-level partitioning of large-scale DNA constructs for synthetic biology applications
Cited by: 2
Author(s): Matthias Christen, Luca Del Medico, H. Christen, Beat Christen
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2105-9-321

GBParsy: A GenBank flatfile parser library with high speed
Cited by: 9
Author(s): Tae‐Ho Lee, Yeon-Ki Kim, Baek Hie Nahm
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2164-6-103

Conjugative plasmid pAW63 brings new insights into the genesis of the Bacillus anthracis virulence plasmid pXO2 and of the Bacillus thuringiensis plasmid pBT9727
Cited by: 91
Author(s): Géraldine A. Van der Auwera, Lars Andrup, Jacques Mahillon
Software Mentions: 1
Published: over 19 years ago

10.1111/j.1462-2920.2010.02329.x

Virulence of an emerging pathogenic lineage of <i>Vibrio nigripulchritudo</i> is dependent on two plasmids
Cited by: 27
Author(s): Frédérique Le Roux, Yannick Labreuche, Brigid M. Davis, Naeem Iqbal, Sophie Mangenot, Cyrille Goarant, Didier Mazel, Matthew K. Waldor
Software Mentions: 1
Published: over 14 years ago

10.1534/g3.119.400349

Immune Suppressive Extracellular Vesicle Proteins of<i>Leptopilina heterotoma</i>Are Encoded in the Wasp Genome
Cited by: 11
Author(s): Brian Wey, Mary Ellen Heavner, Kameron T Wittmeyer, Thomas Briese, Keith R. Hopper, Shubha Govind
Software Mentions: 1
Published: almost 5 years ago

10.1186/1471-2164-13-625

The large universal Pantoea plasmid LPP-1 plays a major role in biological and ecological diversification
Cited by: 52
Author(s): Pieter De Maayer, Wai-Yin Chan, Jochen Blom, Stephanus N. Venter, Brion Duffy, Theo H. M. Smits, Teresa A. Coutinho
Software Mentions: 1
Published: almost 13 years ago

10.1098/rstb.2018.0089

Competition between mobile genetic elements drives optimization of a phage-encoded CRISPR-Cas system: insights from a natural arms race
Cited by: 33
Author(s): Amelia C. McKitterick, Kristen N. LeGault, Angus Angermeyer, Munirul Alam, Kimberley D. Seed
Software Mentions: 1
Published: almost 6 years ago