Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: RBGL

https://packages.ecosyste.ms/registries/bioconductor.org/packages/RBGL

An interface to the BOOST graph library
2 versions
Latest release: about 1 year ago
33 dependent packages
1,354,826 downloads total

Papers Mentioning RBGL 18

10.1002/pmic.201400392

Visualization of proteomics data using R and Bioconductor
Cited by: 46
Author(s): Laurent Gatto, Lisa M. Breckels, Thomas Naake, Sebastian Gibb
Software Mentions: 62
Published: over 9 years ago

CyREST: Turbocharging Cytoscape Access for External Tools via a RESTful API
Cited by: 77
Author(s): Keiichiro Ono, Tanja Muetze, Georgi Kolishovski, Paul Shannon, Barry Demchak
Software Mentions: 8
Published: over 9 years ago

10.1186/1471-2105-8-S6-S8

Graphs in molecular biology
Cited by: 108
Author(s): Wolfgang Huber, Vincent J. Carey, Long Li, Seth Falcon, Robert Gentleman
Software Mentions: 7
Published: about 17 years ago

10.1186/1471-2105-12-492

Structural Measures for Network Biology Using QuACN
Cited by: 18
Author(s): Laurin A. J. Mueller, Karl G. Kugler, Armin Graber, Frank Emmert‐Streib, Matthias Dehmer
Software Mentions: 7
Published: almost 13 years ago

10.1186/1471-2105-12-455

iRefR: an R package to manipulate the iRefIndex consolidated protein interaction database
Cited by: 62
Author(s): Antonio M. Mora, Ian Donaldson
Software Mentions: 6
Published: almost 13 years ago

10.1186/s12864-016-2718-y

Ribosome quality control is a central protection mechanism for yeast exposed to deoxynivalenol and trichothecin
Cited by: 11
Author(s): Karl G. Kugler, Zeljkica Jandric, Reinhard Beyer, Eva Klopf, Walter Glaser, Marc Lemmens, Mehrdad Shams, Klaus Mayer, Gerhard Adam, Christoph Schüller
Software Mentions: 6
Published: over 8 years ago

10.1186/s12864-019-5933-5

Uncovering the molecular signature underlying the light intensity-dependent root development in Arabidopsis thaliana
Cited by: 13
Author(s): Sony Kumari, Sneha Yadav, Debadutta Patra, Sharmila Singh, Ananda K. Sarkar, Kishore C. S. Panigrahi
Software Mentions: 6
Published: over 5 years ago

10.12688/f1000research.20887.3

RCy3: Network biology using Cytoscape from within R
Cited by: 72
Author(s): Julia Gustavsen, Shraddha Pai, Ruth Isserlin, Barry Demchak, Alexander R. Pico
Software Mentions: 6
Published: almost 5 years ago

10.7554/eLife.00522

Cellular resolution models for even skipped regulation in the entire Drosophila embryo
Cited by: 43
Author(s): Garth R Ilsley, Jasmin Fisher, Rolf Apweiler, Angela H. DePace, Nicholas M. Luscombe
Software Mentions: 4
Published: over 11 years ago

10.15252/msb.20156351

Fundamentals of protein interaction network mapping
Cited by: 211
Author(s): Jamie Snider, Max Kotlyar, Punit Saraon, Zhong Yao, Igor Jurišica, Igor Štagljar
Software Mentions: 4
Published: almost 9 years ago

10.3389/fimmu.2019.02186

Common Nodes of Virus–Host Interaction Revealed Through an Integrated Network Analysis
Cited by: 65
Author(s): Korbinian Bösl, Aleksandr Ianevski, Thoa Thi Than, Petter I. Andersen, Suvi Kuivanen, Mona Teppor, Eva Žusinaite, Uga Dumpis, Astra Vitkauskienė, Rebecca Jane Cox, Hannimari Kallio‐Kokko, Anders Bergqvist, Tanel Tenson, Andres Merits, Valentyn Oksenych, Magnar Bjørås, Marit W. Anthonsen, David Shum, Mari Kaarbø, Olli Vapalahti, Marc P. Windisch, Giulio Superti‐Furga, Berend Snijder, Denis E. Kainov, Richard K. Kandasamy
Software Mentions: 4
Published: about 5 years ago

10.1186/1752-0509-8-S1-S5

Detection of type 2 diabetes related modules and genes based on epigenetic networks
Cited by: 6
Author(s): Liu Hui, Tongtong Wang, Hongbo Liu, Yanjun Wei, Guofeng Zhao, Jianzhong Su, Qiong Wu, Hong Qiao, Yan Zhang
Software Mentions: 3
Published: almost 11 years ago

10.1155/2015/245075

Characterization of Protein Complexes and Subcomplexes in Protein-Protein Interaction Databases
Cited by: 1
Author(s): Nazar Zaki, Elfadil A. Mohamed, Antonio M. Mora
Software Mentions: 3
Published: almost 10 years ago

10.1371/journal.pone.0017429

NAViGaTing the Micronome – Using Multiple MicroRNA Prediction Databases to Identify Signalling Pathway-Associated MicroRNAs
Cited by: 194
Author(s): Elize A. Shirdel, Wing Xie, Tak W. Mak, Igor Jurišica
Software Mentions: 3
Published: over 13 years ago

10.1186/1741-7007-8-146

2R and remodeling of vertebrate signal transduction engine
Cited by: 77
Author(s): Łukasz Huminiecki, Carl Henrik Heldin
Software Mentions: 3
Published: almost 14 years ago

10.1186/1471-2105-12-205

A scan statistic to extract causal gene clusters from case-control genome-wide rare CNV data
Cited by: 6
Author(s): Takeshi Nishiyama, Kunihiko Takahashi, Toshiro Tango, Dalila Pinto, Stephen W. Scherer, Shinichi Takami, Hirohisa Kishino
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0013021

A Network Approach to Predict Pathogenic Genes for Fusarium graminearum
Cited by: 41
Author(s): Xiaoping Li, Weihua Tang, Xing‐Ming Zhao, Luonan Chen
Software Mentions: 1
Published: about 14 years ago

10.1186/1476-4598-7-72

Metabolite profiling of human colon carcinoma – deregulation of TCA cycle and amino acid turnover
Cited by: 286
Author(s): Carsten Denkert, Jan Budczies, Wilko Weichert, Gert Wohlgemuth, Martin Scholz, Tobias Kind, Silvia Niesporek, Aurelia Noske, Anna Buckendahl, Manfred Dietel, Oliver Fiehn
Software Mentions: 1
Published: almost 17 years ago