Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: SAPP

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/SAPP

Statistical Analysis of Point Processes
8 versions
Latest release: over 1 year ago
343 downloads last month

Papers Mentioning SAPP 18

Phenotype and multi-omics comparison of Staphylococcus and Streptococcus uncovers pathogenic traits and predicts zoonotic potential
Cited by: 3
Author(s): Niels A. Zondervan, Vítor A. P. Martins dos Santos, María Suárez-Diez, Edoardo Saccenti
Software Mentions: 10
Published: over 3 years ago

10.1186/s13068-020-01838-1

Genome-scale metabolic modeling underscores the potential of Cutaneotrichosporon oleaginosus ATCC 20509 as a cell factory for biofuel production
Cited by: 16
Author(s): Nhung Pham, Maarten J.M.F. Reijnders, María Suárez-Diez, Bart Nijsse, Jan Springer, Gerrit Eggink, Peter J. Schaap
Software Mentions: 5
Published: over 3 years ago

10.1038/s41597-019-0263-7

The Empusa code generator and its application to GBOL, an extendable ontology for genome annotation
Cited by: 9
Author(s): Jesse C. J. van Dam, Jasper J. Koehorst, Jon Olav Vik, Vítor A. P. Martins dos Santos, Peter J. Schaap, María Suárez-Diez
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12859-018-2426-5

SyNDI: synchronous network data integration framework
Cited by: 1
Author(s): Erno Lindfors, Jesse C. J. van Dam, Carolyn M.C. Lam, Niels A. Zondervan, Vítor A. P. Martins dos Santos, María Suárez-Diez
Software Mentions: 3
Published: almost 6 years ago

10.1002/bit.26347

Metabolic modeling of energy balances in<i>Mycoplasma hyopneumoniae</i>shows that pyruvate addition increases growth rate
Cited by: 11
Author(s): Tjerko Kamminga, Simen Jan Slagman, Jetta J. E. Bijlsma, Vítor A. P. Martins dos Santos, María Suárez-Diez, Peter J. Schaap
Software Mentions: 3
Published: about 7 years ago

10.12688/f1000research.9416.3

Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics
Cited by: 4
Author(s): Jasper J. Koehorst, Edoardo Saccenti, Peter J. Schaap, Vítor A. P. Martins dos Santos, María Suárez-Diez
Software Mentions: 3
Published: about 7 years ago

10.3389/fmicb.2018.02269

Forward Genetics by Genome Sequencing Uncovers the Central Role of the Aspergillus niger goxB Locus in Hydrogen Peroxide Induced Glucose Oxidase Expression
Cited by: 13
Author(s): Thanaporn Laothanachareon, Juan Antonio Tamayo-Ramos, Bart Nijsse, Peter J. Schaap
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2020.01679

Combined Transcriptome Sequencing of Mycoplasma hyopneumoniae and Infected Pig Lung Tissue Reveals Up-Regulation of Bacterial F1-Like ATPase and Down-Regulation of the P102 Cilium Adhesin in vivo
Cited by: 3
Author(s): Tjerko Kamminga, Nirupama Benis, Vítor Martins dos Santos, Jetta J. E. Bijlsma, Peter J. Schaap
Software Mentions: 2
Published: about 4 years ago

10.1186/s13326-015-0038-9

RDF2Graph a tool to recover, understand and validate the ontology of an RDF resource
Cited by: 14
Author(s): Jesse C. J. van Dam, Jasper J. Koehorst, Peter J. Schaap, Vítor A. P. Martins dos Santos, María Suárez-Diez
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-019-54445-y

Metabolic shift induced by synthetic co-cultivation promotes high yield of chain elongated acids from syngas
Cited by: 40
Author(s): Martijn Diender, Ivette Parera Olm, Marten Gelderloos, Jasper J. Koehorst, Peter J. Schaap, Alfons Johannes Maria Stams, Diana Z. Sousa
Software Mentions: 2
Published: almost 5 years ago

10.1111/1751-7915.13794

Galactocerebroside biosynthesis pathways of <i>Mycoplasma</i> species: an antigen triggering Guillain–Barré–Stohl syndrome
Cited by: 5
Author(s): Erika Gaspari, Jasper J. Koehorst, Joachim Frey, Vítor A. P. Martins dos Santos, María Suárez-Diez
Software Mentions: 2
Published: over 3 years ago

10.3390/ijerph15102306

Climate Change Adaptation through the Water-Energy-Food Nexus in Southern Africa
Cited by: 86
Author(s): Sylvester Mpandeli, Dhesigen Naidoo, Tafadzwanashe Mabhaudhi, Charles Nhemachena, Luxon Nhamo, Stanley Liphadzi, Sithabile Hlahla, Albert T. Modi
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12866-020-02058-1

A metabolic and physiological design study of Pseudomonas putida KT2440 capable of anaerobic respiration
Cited by: 15
Author(s): Linde F. C. Kampers, Jasper J. Koehorst, Ruben J. A. van Heck, María Suárez-Diez, Alfons Johannes Maria Stams, Peter J. Schaap
Software Mentions: 1
Published: over 3 years ago

10.1186/s12934-019-1227-5

In silico-guided engineering of Pseudomonas putida towards growth under micro-oxic conditions
Cited by: 21
Author(s): Linde F. C. Kampers, Ruben G. A. van Heck, Stefano Donati, Edoardo Saccenti, Rita J. M. Volkers, Peter J. Schaap, María Suárez-Diez, Pablo I. Nikel, Vítor A. P. Martins dos Santos
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0124880

Effects of Argonaute on Gene Expression in Thermus thermophilus
Cited by: 40
Author(s): Daan C. Swarts, Jasper J. Koehorst, Edze R. Westra, Peter J. Schaap, John van der Oost
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2020.588468

Effect of Sulfate on Carbon Monoxide Conversion by a Thermophilic Syngas-Fermenting Culture Dominated by a Desulfofundulus Species
Cited by: 6
Author(s): J. I. Alves, M. Visser, Ana Luísa Arantes, Bart Nijsse, Caroline M. Plugge, M. M. Alves, Alfons Johannes Maria Stams, Diana Z. Sousa
Software Mentions: 1
Published: almost 4 years ago

10.3389/fmicb.2018.03108

Co-culture of a Novel Fermentative Bacterium, Lucifera butyrica gen. nov. sp. nov., With the Sulfur Reducer Desulfurella amilsii for Enhanced Sulfidogenesis
Cited by: 19
Author(s): Irene Sánchez‐Andrea, Anna Patrícya Florentino, Jeltzlin Semerel, Nikolaos Strepis, Diana Z. Sousa, Alfons Johannes Maria Stams
Software Mentions: 1
Published: almost 6 years ago

10.1128/genomeA.01167-17

Complete Genome Sequence of Eubacterium hallii Strain L2-7
Cited by: 17
Author(s): Sudarshan A. Shetty, Jarmo Ritari, Lars Paulín, Hauke Smidt, Willem M. de Vos
Software Mentions: 1
Published: almost 7 years ago