Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: gggenes

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/gggenes

Draw Gene Arrow Maps in 'ggplot2'
8 versions
Latest release: about 1 year ago
2 dependent packages
8,847 downloads last month

Papers Mentioning gggenes 17

Metabolic Traits of Bovine Shiga Toxin-Producing Escherichia coli (STEC) Strains with Different Colonization Properties
Cited by: 4
Author(s): Stefanie A. Barth, M. Weber, Katharina Schaufler, Christian Berens, Lutz Geue, Christian Menge
Software Mentions: 9
Published: about 4 years ago

10.1371/journal.pgen.1009268

Genetic diversity of the Plasmodium falciparum GTP-cyclohydrolase 1, dihydrofolate reductase and dihydropteroate synthetase genes reveals new insights into sulfadoxine-pyrimethamine antimalarial drug resistance
Cited by: 12
Author(s): Anna Turkiewicz, Emilia Mańko, Colin J. Sutherland, Ernest Diez Benavente, Susana Campino, Taane G. Clark
Software Mentions: 8
Published: over 3 years ago

10.3390/microorganisms9020315

TAL Effector Repertoires of Strains of Xanthomonas phaseoli pv. manihotis in Commercial Cassava Crops Reveal High Diversity at the Country Scale
Cited by: 6
Author(s): Carlos A Zárate-Chaves, Daniela Osorio-Rodríguez, Ruben E. Mora, Álvaro L. Pérez‐Quintero, Alexis Dereeper, Silvia Restrepo, Camilo López, Boris Szurek, Adriana Bernal
Software Mentions: 7
Published: over 3 years ago

10.1186/s12864-021-07766-0

Genome analysis of Pseudomonas sp. OF001 and Rubrivivax sp. A210 suggests multicopper oxidases catalyze manganese oxidation required for cylindrospermopsin transformation
Cited by: 0
Author(s): Erika Berenice Martínez-Ruiz, Myriel Cooper, Jimena Barrero-Canosa, Mindia Haryono, Irina Bessarab, Rohan B. H. Williams, Ulrich Szewzyk
Software Mentions: 7
Published: about 3 years ago

10.3389/fpls.2020.570436

Insights Into the Regulation of the Expression Pattern of Calvin-Benson-Bassham Cycle Enzymes in C3 and C4 Grasses
Cited by: 1
Author(s): Chidi Afamefule, Christine A. Raines
Software Mentions: 6
Published: almost 4 years ago

10.3390/microorganisms9091906

Comparative Genomic Analysis of Novel Bifidobacterium longum subsp. longum Strains Reveals Functional Divergence in the Human Gut Microbiota
Cited by: 9
Author(s): Romina Díaz, Alexis Torres-Miranda, Guillermo Orellana, Daniel Garrido
Software Mentions: 5
Published: about 3 years ago

10.1186/s12864-019-6314-9

Mating precedes selective immune priming which is maintained throughout bumblebee queen diapause
Cited by: 32
Author(s): Thomas J. Colgan, Sive Finlay, Mark J. F. Brown, James C. Carolan
Software Mentions: 5
Published: almost 5 years ago

10.3390/v12101065

Genome Sequence and Characterization of Five Bacteriophages Infecting Streptomyces coelicolor and Streptomyces venezuelae: Alderaan, Coruscant, Dagobah, Endor1 and Endor2
Cited by: 14
Author(s): Aël Hardy, Vikas Sharma, Larissa Kever, Julia Frunzke
Software Mentions: 4
Published: almost 4 years ago

10.3389/fmicb.2021.718297

Tight Adherence (Tad) Pilus Genes Indicate Putative Niche Differentiation in Phytoplankton Bloom Associated Rhodobacterales
Cited by: 14
Author(s): Ashley Isaac, Ben Francis, Rudolf Amann, Shady A. Amin
Software Mentions: 4
Published: about 3 years ago

10.3389/fmicb.2020.01430

A Hopeful Sea-Monster: A Very Large Homologous Recombination Event Impacting the Core Genome of the Marine Pathogen Vibrio anguillarum
Cited by: 6
Author(s): Nicola M. Coyle, Kerry L. Bartie, Sion C. Bayliss, Michaël Bekaert, Alexandra Adams, Stuart McMillan, David W. Verner–Jeffreys, Andrew P. Desbois, Edward J. Feil
Software Mentions: 3
Published: about 4 years ago

10.3389/fmicb.2020.00082

Comparative Genomic Analysis of a Novel Strain of Taiwan Hot-Spring Cyanobacterium Thermosynechococcus sp. CL-1
Cited by: 25
Author(s): Yen I. Cheng, Li-Dek Chou, Yi Fang Chiu, Hsin Ta Hsueh, Chih Horng Kuo, Hsiu-An Chu
Software Mentions: 3
Published: over 4 years ago

10.1186/s12864-020-06988-y

Genomic and transcriptomic insights into Raffaelea lauricola pathogenesis
Cited by: 5
Author(s): Yucheng Zhang, Junli Zhang, Dan Vanderpool, Jason A. Smith, Jeffrey A. Rollins
Software Mentions: 3
Published: about 4 years ago

10.1128/mSphere.00228-18

FusoPortal: an Interactive Repository of Hybrid MinION-Sequenced <i>Fusobacterium</i> Genomes Improves Gene Identification and Characterization
Cited by: 11
Author(s): Blake E. Sanders, Ariana Umaña, Justin A. Lemkul, Daniel J. Slade
Software Mentions: 2
Published: about 6 years ago

10.1264/jsme2.ME21018

Nitrogen-fixing Ability and Nitrogen Fixation-related Genes of Thermophilic Fermentative Bacteria in the Genus <i>Caldicellulosiruptor</i>
Cited by: 13
Author(s): Yuxin Chen, Arisa Nishihara, Shin Haruta
Software Mentions: 2
Published: over 3 years ago

10.1128/mSphere.00156-20

Diversity of Secondary Metabolism in Aspergillus nidulans Clinical Isolates
Cited by: 29
Author(s): Milton T. Drott, Rafael Wesley Bastos, Antonis Rokas, Laure Nicolas Annick Ries, Toni Gabaldón, Gustavo H. Goldman, Nancy P. Keller, Claudio Greco
Software Mentions: 1
Published: over 4 years ago

10.3389/fcimb.2020.00274

Determining the Genetic Characteristics of Resistance and Virulence of the “Epidermidis Cluster Group” Through Pan-Genome Analysis
Cited by: 14
Author(s): Zhewei Sun, Dingfu Zhou, Xueya Zhang, Qiaoling Li, Hailong Lin, Wei Lü, Hongmao Liu, Jing Lü, Xiangmin Lin, Kewei Li, Teng Xu, Qiyu Bao, Hailin Zhang
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2021.744291

Clinical Molecular and Genomic Epidemiology of Morganella morganii in China
Cited by: 8
Author(s): Guoxiu Xiang, Kai Lan, Yuanqing Cai, Kang Liao, Mei Zhao, Tao Jia, Yi Ma, Jianming Zeng, Weizheng Zhang, Zhongwen Wang, Xinmin Yu, Yuyang Liu, Yang Lü, Caixia Xu, Liang Chen, Yi‐Wei Tang, Chen Cha, Wei Jia, Bin Huang
Software Mentions: 1
Published: almost 3 years ago