Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: Pacific

https://packages.ecosyste.ms/registries/pypi.org/packages/Pacific

Pacific
3 versions
Latest release: over 10 years ago
28 downloads last month

Papers Mentioning Pacific 18

Massively multiplex single-molecule oligonucleosome footprinting
Cited by: 41
Author(s): Nour J. Abdulhay, Christopher A. McNally, Laura J Hsieh, Sivakanthan Kasinathan, Aidan M. Keith, Laurel S Estes, Mehran Karimzadeh, Jason G. Underwood, Hani Goodarzi, Geeta J. Narlikar, Vijay Ramani
Software Mentions: 5
Published: almost 4 years ago

10.1155/2019/4767354

GAAP: A Genome Assembly + Annotation Pipeline
Cited by: 5
Author(s): Jinhwa Kong, Sun Huh, Jung-Im Won, Jeehee Yoon, Baeksop Kim, Ki-Yong Kim
Software Mentions: 5
Published: over 5 years ago

10.1111/1755-0998.13008

Metabarcoding a diverse arthropod mock community
Cited by: 97
Author(s): Thomas Braukmann, Natalia V. Ivanova, Sean W. J. Prosser, Vasco Elbrecht, Dirk Steinke, Sujeevan Ratnasingham, Jeremy R. de Waard, Jayme E Sones, Evgeny Zakharov, Paul D. N. Hebert
Software Mentions: 5
Published: over 5 years ago

10.1101/2021.02.21.432184

High-Throughput, Single-Copy Sequencing Reveals SARS-CoV-2 Spike Variants Coincident with Mounting Humoral Immunity during Acute COVID-19
Cited by: 4
Author(s): Sung Hee Ko, Elham Bayat Mokhtari, Prakriti Mudvari, Sydney Stein, Christopher D. Stringham, Danielle A. Wagner, Sabrina Ramelli, Marcos J. Ramos‐Benitez, Jeffrey R Strich, Richard T. Davey, Tongqing Zhou, John Misasi, Peter D. Kwong, Daniel S. Chertow, Nancy J. Sullivan, Eli Boritz
Software Mentions: 3
Published: over 3 years ago

10.1186/s12915-020-0744-3

A 19-isolate reference-quality global pangenome for the fungal wheat pathogen Zymoseptoria tritici
Cited by: 80
Author(s): Thomas Badet, Ursula Oggenfuss, Leen Nanchira Abraham, Bruce A. McDonald, Daniel Croll
Software Mentions: 3
Published: almost 5 years ago

10.1186/gb-2013-14-5-r51

Characterizing and measuring bias in sequence data
Cited by: 708
Author(s): Michael G. Ross, Carsten Russ, Maura Costello, Andrew Hollinger, Niall J. Lennon, Ryan Hegarty, Chad Nusbaum, David B. Jaffe
Software Mentions: 3
Published: almost 12 years ago

10.1186/1741-7007-11-4

Enhanced 5-methylcytosine detection in single-molecule, real-time sequencing via Tet1 oxidation
Cited by: 113
Author(s): Tyson A. Clark, Xingyu Lu, Khai Luong, Qing Dai, Matthew Boitano, Stephen W. Turner, Chuan He, Jonas Korlach
Software Mentions: 2
Published: almost 12 years ago

10.3390/biom11081111

Analyzing Modern Biomolecules: The Revolution of Nucleic-Acid Sequencing – Review
Cited by: 10
Author(s): Gabriel Dorado, Sergio Gálvez, Teresa Rosales, Víctor F. Vásquez, Pilar Hernández
Software Mentions: 2
Published: over 3 years ago

10.3390/ani10060980

Comparative Transcriptome Profiling Analysis Uncovers Novel Heterosis-Related Candidate Genes Associated with Muscular Endurance in Mules
Cited by: 5
Author(s): Shan Gao, Hojjat Asadollahpour Nanaei, Bin Wei, Yu Wang, Xihong Wang, Zongjun Li, Xuelei Dai, Zhichao Wang, Yu Jiang, Junjie Shao
Software Mentions: 2
Published: over 4 years ago

10.3390/v10080436

Recent Advances on Detection and Characterization of Fruit Tree Viruses Using High-Throughput Sequencing Technologies
Cited by: 89
Author(s): Varvara I. Maliogka, A. Minafra, P. Saldarelli, Ana Belén Ruiz-García, Miroslav Glasa, N. I. Katis, Antonio Olmos
Software Mentions: 2
Published: over 6 years ago

10.1186/1471-2105-12-S1-S24

Strobe sequence design for haplotype assembly
Cited by: 19
Author(s): Christine Lo, Ali Kashif Bashir, Vikas Bansal, Vineet Bafna
Software Mentions: 2
Published: almost 14 years ago

10.1186/1471-2180-12-245

Analysis of a unique Clostridium botulinum strain from the Southern hemisphere producing a novel type E botulinum neurotoxin subtype
Cited by: 35
Author(s): Brian Raphael, Matthew Lautenschlager, Suzanne R. Kalb, Laura I. T. de Jong, Michael Frace, Carolina Lúquez, John R. Barr, Rafael Fernández, Susan E. Maslanka
Software Mentions: 1
Published: almost 13 years ago

10.5365/WPSAR.2016.7.3.009

Syndromic surveillance in Vanuatu since Cyclone Pam: a descriptive study
Cited by: 2
Author(s): George Worwor, Anthony Harries, Onofre Edwin Merilles, Kerri Viney, Jean Jacques Rory, George Taleo, Philippe Guyant
Software Mentions: 1
Published: almost 8 years ago

10.1186/1746-4811-5-5

A rapid method of fruit cell isolation for cell size and shape measurements
Cited by: 38
Author(s): Peter A. McAtee, Ian C. Hallett, Jason W. Johnston, Robert J. Schaffer
Software Mentions: 1
Published: over 15 years ago

10.3390/genes1010143

Software Mentions: 1

10.15766/mep_2374-8265.11109

Successful Implementation of a Medical Student Postpartum Follow-up Phone Call Project
Cited by: 0
Author(s): Cynthia Abraham
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12887-018-0999-9

Gastro-oesophageal reflux: a mixed methods study of infants admitted to hospital in the first 12 months following birth in NSW (2000–2011)
Cited by: 20
Author(s): Hannah G Dahlen, Jann P Foster, Kim Psaila, Kenneth W. Spence, Nadia Badawi, Cathrine Fowler, Virginia Schmied, Charlene Thornton
Software Mentions: 1
Published: almost 7 years ago

10.3390/molecules24122317

Cytotoxic Effects of Diterpenoid Alkaloids Against Human Cancer Cells
Cited by: 26
Author(s): Koji Wada, Hiroshi Yamashita
Software Mentions: 1
Published: over 5 years ago