Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: enrichr
https://packages.ecosyste.ms/registries/pypi.org/packages/enrichr
Security Enrichment Framework
5 versions
Latest release: over 3 years ago
50 downloads last month
Papers Mentioning enrichr 18
10.1136/jitc-2020-002071
HLA Ligand Atlas: a benign reference of HLA-presented peptides to improve T-cell-based cancer immunotherapyCited by: 109
Author(s): Ana Marcu, Leon Bichmann, Lèon Kuchenbecker, Daniel J. Kowalewski, Lena Katharina Freudenmann, Linus Backert, Lena Mühlenbruch, András Szolek, Maren Lübke, Philipp Wagner, Tobias Engler, Sabine Matovina, Jian Wang, Mathias Hauri-Hohl, Thierry Martin, Konstantina Kapolou, Juliane S. Walz, Julia Velz, Holger Moch, Luca Regli, Manuela Silginer, Michael Weller, Markus Löffler, Florian Erhard, Andreas Schlösser, Oliver Kohlbacher, Stefan Stevanović, Hans Georg Rammensee, Marian C. Neidert
Software Mentions: 8
Published: over 3 years ago
10.3390/cancers12041028
Changes in the Expression of Pre-Replicative Complex Genes in hTERT and ALT Pediatric Brain TumorsCited by: 8
Author(s): Aurora Idilli, Francesca Pagani, Emanuela Kerschbamer, Francesco Berardinelli, Manuel Bernabé, María L. Cayuela, Silvano Piazza, Pietro Luigi Poliani, Emilio Cusanelli, Marina Mione
Software Mentions: 6
Published: over 4 years ago
10.1111/age.12873
Genomic regions influencing intramuscular fat in divergently selected rabbit linesCited by: 15
Author(s): Bolívar Samuel Sosa-Madrid, Pilar Hernández, A. Blasco, Chris Haley, Luca Fontanesi, M. A. Santacreu, Ramona N. Pena, Pau Navarro, Noelia Ibáñez‐Escriche
Software Mentions: 6
Published: about 5 years ago
10.1093/bib/bbaa072
Scoring functions for drug-effect similarityCited by: 13
Author(s): Stephan Struckmann, Markus Ernst, Sarah Fischer, Nancy Mah, Georg Fuellen, Steffen Möller
Software Mentions: 5
Published: over 4 years ago
10.1038/s41398-021-01309-7
Gut microbial taxa elevated by dietary sugar disrupt memory functionCited by: 42
Author(s): Emily E. Noble, C. Anders Olson, Elizabeth A. Davis, Linda Tsan, Yen‐Wei Chen, Ruth Schade, Clarissa Liu, Andrea N. Suarez, Roshonda B. Jones, Claire de La Serre, Xia Yang, Elaine Y. Hsiao, Scott E. Kanoski
Software Mentions: 4
Published: over 3 years ago
10.1038/s41598-018-33779-z
Chromatin accessibility landscape of articular knee cartilage reveals aberrant enhancer regulation in osteoarthritisCited by: 34
Author(s): Ye Liu, Jen-Chien Chang, Chung-Chau Hon, Naoshi Fukui, Nobuhiro Tanaka, Zhen Ya Zhang, Ming Ta Michael Lee, Aki Minoda
Software Mentions: 4
Published: about 6 years ago
10.1038/s41598-021-82910-0
Mutational processes in cancer preferentially affect binding of particular transcription factorsCited by: 2
Author(s): Mo Liu, Arnoud Boot, Alvin Wei Tian Ng, Raluca Gordân, Steven G. Rozen
Software Mentions: 4
Published: almost 4 years ago
10.1186/s40478-021-01186-7
VISTA regulates microglia homeostasis and myelin phagocytosis, and is associated with MS lesion pathologyCited by: 3
Author(s): Malte Borggrewe, Susanne M. Kooistra, Evelyn Wesseling, Fenja L. Gierschek, Maaike L. Brummer, Elizabeth C. Nowak, Tiago Medeiros-Furquim, Tegan Otto, Sam W. Lee, Randolph J. Noelle, Bart J. L. Eggen, Jon D. Laman
Software Mentions: 3
Published: over 3 years ago
10.1002/1878-0261.12446
Expression of long non‐coding <scp>RNA ENSG</scp>00000226738 (Lnc<scp>KLHDC</scp>7B) is enriched in the immunomodulatory triple‐negative breast cancer subtype and its alteration promotes cell migration, invasion, and resistance to cell deathCited by: 27
Author(s): Fredy Omar Beltrán-Anaya, Sandra Romero-Córdoba, Rosa Rebollar-Vega, Óscar Arrieta, Verónica Bautista-Piña, Carlos Alberto Domínguez-Reyes, Felipe Villegas-Carlos, Alberto Tenorio-Torres, Luis Alfaro-Riuz, Silvia Jiménez-Morales, Alberto Cedro‐Tanda, Magdalena Ríos-Romero, Juan Pablo Reyes‐Grajeda, Elda Tagliabue, Marilena V. Iorio, Alfredo Hidalgo-Miranda
Software Mentions: 3
Published: almost 6 years ago
10.1371/journal.pone.0176172
Tracking disease progression by searching paths in a temporal network of biological processesCited by: 7
Author(s): Rajat Anand, Samrat Chatterjee
Software Mentions: 3
Published: over 7 years ago
10.1038/s42003-021-02142-w
A combined approach for single-cell mRNA and intracellular protein expression analysisCited by: 52
Author(s): Johan Reimegård, Marcel Tarbier, Marcus Danielsson, Jens Schuster, Sathishkumar Baskaran, Styliani Panagiotou, Niklas Dahl, Marc R. Friedländer, Caroline J. Gallant
Software Mentions: 3
Published: over 3 years ago
10.3389/fgene.2020.00808
Gender Differential Transcriptome in Gastric and Thyroid CancersCited by: 8
Author(s): Abel Sousa, Marta Ferreira, Carla Oliveira, Pedro G. Ferreira
Software Mentions: 3
Published: over 4 years ago
10.3389/fcell.2021.730475
An Ovarian Cancer Susceptible Gene Prediction Method Based on Deep Learning MethodsCited by: 4
Author(s): Ye Lu, Yi Zhang, Xiaohong Yang, Fei Shen, Bo Xu
Software Mentions: 2
Published: over 3 years ago
10.3390/mps2010008
Fast Proteome Identification and Quantification from Data-Dependent Acquisition–Tandem Mass Spectrometry (DDA MS/MS) Using Free Software ToolsCited by: 15
Author(s): Jesse G. Meyer
Software Mentions: 2
Published: almost 6 years ago
10.18632/aging.103068
Integrated data analysis reveals significant associations of KEAP1 mutations with DNA methylation alterations in lung adenocarcinomasCited by: 7
Author(s): Mohamed Elshaer, Ahmed Islam El-Manawy, Ahmed Hammad, Akhileshwar Namani, Xiu Jun Wang, Xiuwen Tang
Software Mentions: 1
Published: over 4 years ago
10.1002/ctm2.427
Dual role of the miR‐146 family in rhinovirus‐induced airway inflammation and allergic asthma exacerbationCited by: 21
Author(s): Anet Laanesoo, Egon Urgard, Kapilraj Periyasamy, Martti Laan, Yury A. Bochkov, Alar Aab, Nathaniel Magilnick, Margus Pooga, James E. Gern, Sebastian L. Johnston, Jonathan M. Coquet, Mark Boldin, Jesper Wengel, Alan Altraja, Grażyna Bochenek, Bogdan Jakieła, Ana Rebane
Software Mentions: 1
Published: over 3 years ago
10.1002/acn3.369
Genomics implicates adaptive and innate immunity in Alzheimer's and Parkinson's diseasesCited by: 74
Author(s): Sarah A. Gagliano, J Pouget, John Hardy, Jo Knight, Michael R. Barnes, Mina Ryten, Michael E. Weale
Software Mentions: 1
Published: about 8 years ago
10.3389/fcell.2021.606971
Elavl1 Impacts Osteogenic Differentiation and mRNA Levels of Genes Involved in ECM OrganizationCited by: 6
Author(s): Satya K. Kota, Zhu Wei Lim, Savithri Balasubramanian Kota
Software Mentions: 1
Published: almost 4 years ago