Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: MetaPath

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/MetaPath

Perform the Meta-Analysis for Pathway Enrichment Analysis (MAPE)
2 versions
Latest release: about 9 years ago
0 downloads

Papers Mentioning MetaPath 18

Overcoming the matched-sample bottleneck: an orthogonal approach to integrate omic data
Cited by: 21
Author(s): Tin Nguyen, Diana Diaz, Rebecca Tagett, Sorin Drăghici
Software Mentions: 5
Published: over 8 years ago

10.3389/fnins.2021.645998

Identification of Diagnostic Markers for Major Depressive Disorder Using Machine Learning Methods
Cited by: 12
Author(s): Zhao Shu, Bao Zhaorigetu, Xinyi Zhao, Maochao Xu, Ming D. Li, Zhongli Yang
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pcbi.1006899

Gene set meta-analysis with Quantitative Set Analysis for Gene Expression (QuSAGE)
Cited by: 11
Author(s): Hailong Meng, Gur Yaari, Christopher R. Bolen, Stefan Avey, Steven H. Kleinstein
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-60981-9

NBIA: a network-based integrative analysis framework – applied to pathway analysis
Cited by: 7
Author(s): Tin Nguyen, Adib Shafi, Tuan-Minh Nguyen, A. Grant Schissler, Sorin Drăghici
Software Mentions: 4
Published: almost 5 years ago

10.18632/oncotarget.12390

Meta-analysis of gene expression and integrin-associated signaling pathways in papillary renal cell carcinoma subtypes
Cited by: 4
Author(s): Kai Zhang, Hang-Mao Lee, Gong-Hong Wei, Aki Manninen
Software Mentions: 3
Published: about 8 years ago

10.3389/fgene.2015.00348

The Road to Metagenomics: From Microbiology to DNA Sequencing Technologies and Bioinformatics
Cited by: 223
Author(s): Alejandra Escobar‐Zepeda, Arturo Vera‐Ponce de León, Alejandro Sánchez-Flores
Software Mentions: 3
Published: about 9 years ago

10.3390/genes11060696

Comparative Pathway Integrator: A Framework of Meta-Analytic Integration of Multiple Transcriptomic Studies for Consensual and Differential Pathway Analysis
Cited by: 7
Author(s): Xiangrui Zeng, Wei Zong, Chien‐Wei Lin, Zhou Fang, Tianzhou Ma, David A. Lewis, John F. Enwright, George C. Tseng
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-018-28007-7

Enumerating all possible biosynthetic pathways in metabolic networks
Cited by: 24
Author(s): Aarthi Ravikrishnan, Meghana Nasre, Karthik Raman
Software Mentions: 3
Published: over 6 years ago

10.7554/eLife.65543

NICEdrug.ch, a workflow for rational drug design and systems-level analysis of drug metabolism
Cited by: 7
Author(s): Homa MohammadiPeyhani, Anush Chiappino-Pepe, Kiandokht Haddadi, Jasmin Hafner, Noushin Hadadi, Vassily Hatzimanikatis
Software Mentions: 3
Published: over 3 years ago

10.1186/s40168-018-0532-2

A multi-source domain annotation pipeline for quantitative metagenomic and metatranscriptomic functional profiling
Cited by: 36
Author(s): Ari Ugarte, Riccardo Vicedomini, Juliana Silva Bernardes, Alessandra Carbone
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0037919

Deep Sequencing of the Oral Microbiome Reveals Signatures of Periodontal Disease
Cited by: 315
Author(s): Bo Liu, Lina L. Faller, Niels Klitgord, Varun Mazumdar, Mohammad Ghodsi, Daniel Sommer, Theodore Gibbons, Todd J. Treangen, Ya-Pei Chang, Shan Li, O. Colin Stine, Hatice Hastürk, Simon Kasif, Daniel Segrè, Mihai Pop, Salomon Amar
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0041283

Metagenomic Annotation Networks: Construction and Applications
Cited by: 15
Author(s): Gregory Vey, Gabriel Moreno‐Hagelsieb
Software Mentions: 2
Published: over 12 years ago

10.1186/s12864-015-2189-6

Regulatory network reconstruction reveals genes with prognostic value for chronic lymphocytic leukemia
Cited by: 4
Author(s): Sally Yepes, María Mercedes Torres, Liliana López‐Kleine
Software Mentions: 2
Published: about 9 years ago

10.1186/s13068-014-0124-8

Inference of phenotype-defining functional modules of protein families for microbial plant biomass degraders
Cited by: 9
Author(s): Sebastian Ga Konietzny, Phillip B. Pope, Aaron Weimann, Alice C. McHardy
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0168404

Prediction of Possible Biomarkers and Novel Pathways Conferring Risk to Post-Traumatic Stress Disorder
Cited by: 8
Author(s): Kumaraswamy Naidu Chitrala, Mitzi Nagarkatti
Software Mentions: 1
Published: about 8 years ago

10.3390/genes8120350

Genes and Gut Bacteria Involved in Luminal Butyrate Reduction Caused by Diet and Loperamide
Cited by: 36
Author(s): Nakwon Hwang, Tae-Kil Eom, Sachin Gupta, Seong Yeop Jeong, Do Youn Jeong, Yong Sung Kim, Jihoon Lee, Michael J. Sadowsky, Tatsuya Unno
Software Mentions: 1
Published: about 7 years ago

10.1186/1753-6561-5-S2-S9

MetaPath: identifying differentially abundant metabolic pathways in metagenomic datasets
Cited by: 41
Author(s): Bo Liu, Mihai Pop
Software Mentions: 1
Published: over 13 years ago

10.1186/s13321-021-00543-x

Holistic evaluation of biodegradation pathway prediction: assessing multi-step reactions and intermediate products
Cited by: 7
Author(s): J. Y. C. Tam, Tim Lorsbach, Sebastian Schmidt, Jörg Wicker
Software Mentions: 1
Published: over 3 years ago