Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: GML

https://packages.ecosyste.ms/registries/pypi.org/packages/GML

Automating Data Science
15 versions
Latest release: about 4 years ago
115 downloads last month

Papers Mentioning GML 18

10.1186/1471-2105-14-S1-S1

Visualization of protein interaction networks: problems and solutions
Cited by: 70
Author(s): Giuseppe Agapito, Pietro Hiram Guzzi, Mario Cannataro
Software Mentions: 7
Published: almost 12 years ago

CentiServer: A Comprehensive Resource, Web-Based Application and R Package for Centrality Analysis
Cited by: 85
Author(s): Mahdi Jalili, Ali Salehzadeh‐Yazdi, Yazdan Asgari, Seyed Shahriar Arab, Marjan Yaghmaie, Ardeshir Ghavamzadeh, Kamran Alimoghaddam
Software Mentions: 6
Published: about 9 years ago

10.1111/tgis.12456

Compactly representing massive terrain models as TINs in CityGML
Cited by: 9
Author(s): Kavisha Kumar, Hugo Ledoux, J.E. Stoter
Software Mentions: 4
Published: over 6 years ago

10.3389/fninf.2014.00074

Cyberinfrastructure for the digital brain: spatial standards for integrating rodent brain atlases
Cited by: 15
Author(s): Ilya Zaslavsky, Richard Baldock, Jyl Boline
Software Mentions: 3
Published: over 10 years ago

10.1186/1752-0509-6-139

VANTED v2: a framework for systems biology applications
Cited by: 140
Author(s): Hendrik Rohn, Astrid Junker, Anja Hartmann, Eva Grafahrend-Belau, Hendrik Treutler, Matthias Klapperstück, Tobias Czauderna, Christian Klukas, Falk Schreiber
Software Mentions: 2
Published: almost 13 years ago

10.1186/1471-2105-7-109

VANTED: A system for advanced data analysis and visualization in the context of biological networks
Cited by: 431
Author(s): Björn H. Junker, Christian Klukas, Falk Schreiber
Software Mentions: 2
Published: almost 19 years ago

10.1371/journal.pone.0221620

A new grid- and modularity-based layout algorithm for complex biological networks
Cited by: 4
Author(s): Sheng He, Yijun Liu, Feiyue Ye, Renpu Li, Dai Ren-jun
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2105-9-S5-S1

Ontology Design Patterns for bio-ontologies: a case study on the Cell Cycle Ontology
Cited by: 67
Author(s): Mikel Egaña Aranguren, Erick Antezana, Martin Kuiper, Robert Stevens
Software Mentions: 2
Published: over 16 years ago

10.1186/1476-072X-8-3

Towards Web-based representation and processing of health information
Cited by: 31
Author(s): Sheng Gao, Darka Mioc, Xiaolun Yi, François Anton, Eddie Oldfield, David Coleman
Software Mentions: 1
Published: almost 16 years ago

10.1186/1471-2105-10-19

BFL: a node and edge betweenness based fast layout algorithm for large scale networks
Cited by: 11
Author(s): Tatsunori Hashimoto, Masao Nagasaki, Kazuyuki Kojima, Satoru Miyano
Software Mentions: 1
Published: almost 16 years ago

10.1515/jib-2019-0026

Mental-Map Preserving Visualisation of Partitioned Networks in Vanted
Cited by: 2
Author(s): Dimitar Garkov, Karsten Klein, Christian Klukas, Falk Schreiber
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-213X-9-33

myGRN: a database and visualisation system for the storage and analysis of developmental genetic regulatory networks
Cited by: 3
Author(s): Jamil Bacha, James Brodie, Matthew Loose
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0061255

Enterococcus faecalis Inhibits Superantigen Toxic Shock Syndrome Toxin-1-Induced Interleukin-8 from Human Vaginal Epithelial Cells through Tetramic Acids
Cited by: 11
Author(s): Amanda J. Brosnahan, Joseph A. Merriman, Wilmara Salgado-Pabón, Bradley Ford, Patrick M. Schlievert
Software Mentions: 1
Published: over 11 years ago