Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: PyDSTool
https://packages.ecosyste.ms/registries/pypi.org/packages/PyDSTool
Python dynamical systems simulation and modeling
4 versions
Latest release: almost 5 years ago
115 downloads last month
Papers Mentioning PyDSTool 17
10.3389/fninf.2018.00068
Code Generation in Computational Neuroscience: A Review of Tools and TechniquesCited by: 27
Author(s): Inga Blundell, Romain Brette, Thomas A. Cleland, Thomas G. Close, Daniel Coca, Andrew P. Davison, Sandra Diaz-Pier, Carlos Fernandez Musoles, Padraig Gleeson, Dan F. M. Goodman, Michael L. Hines, Michael Hopkins, Pramod Kumbhar, David Lester, Bóris Marin, Abigail Morrison, Eric Müller, Thomas Nowotny, Alexander Peyser, Dimitri Plotnikov, Paul Richmond, Andrew Rowley, Bernhard Rumpe, Marcel Stimberg, Alan B. Stokes, Adam Tomkins, Guido Trensch, Michael Woodman, Jochen Martin Eppler
Software Mentions: 16
Published: about 6 years ago
10.7717/peerj-cs.227
Component-oriented acausal modeling of the dynamical systems in Python language on the example of the model of the sucker rod stringCited by: 5
Author(s): Volodymyr Kopei, Oleh Onysko, Vitalii Panchuk
Software Mentions: 9
Published: about 5 years ago
10.1371/journal.pcbi.1002628
Hybrid Models and Biological Model Reduction with PyDSToolCited by: 71
Author(s): Robert Clewley
Software Mentions: 5
Published: over 12 years ago
10.1371/journal.pcbi.1002799
The PLOS Computational Biology Software SectionCited by: 6
Author(s): Andreas Prlić, Hilmar Lapp
Software Mentions: 2
Published: about 12 years ago
10.1038/srep46571
Excitability in the p53 network mediates robust signaling with tunable activation thresholds in single cellsCited by: 33
Author(s): Gregor Mönke, Elena Cristiano, Ana Finzel, Dhana Friedrich, Hanspeter Herzel, Martin Falcke, Alexander Loewer
Software Mentions: 2
Published: over 7 years ago
10.3389/fncom.2015.00139
Modeling the Influence of Ion Channels on Neuron Dynamics in DrosophilaCited by: 12
Author(s): Sandra D Berger, Sharon Crook
Software Mentions: 2
Published: about 9 years ago
10.1371/journal.pone.0222906
Multiscale Modelling Tool: Mathematical modelling of collective behaviour without the mathsCited by: 8
Author(s): James A. R. Marshall, Andreagiovanni Reina, Thomas Bose
Software Mentions: 2
Published: over 5 years ago
10.18632/oncotarget.25692
A mechanism-based computational model to capture the interconnections among epithelial-mesenchymal transition, cancer stem cells and Notch-Jagged signalingCited by: 61
Author(s): Federico Bocci, Mohit Kumar Jolly, Jason T. George, Herbert Levine, José N. Onuchic
Software Mentions: 1
Published: over 6 years ago
10.1186/1471-2202-13-S1-P165
Geometric analysis of soft thresholds in action potential initiation and the consequences for understanding phase response curves and model tuningCited by: 0
Author(s): Robert Clewley, Bryce Chung
Software Mentions: 1
Published: over 12 years ago
10.1098/rsif.2015.1106
Notch-Jagged signalling can give rise to clusters of cells exhibiting a hybrid epithelial/mesenchymal phenotypeCited by: 123
Author(s): Marcelo Boareto, Mohit Kumar Jolly, Aaron Goldman, Mika Pietilä, Sendurai A. Mani, Shiladitya Sengupta, Eshel Ben‐Jacob, Herbert Levine, José N. Onuchic
Software Mentions: 1
Published: over 8 years ago
10.1186/1752-0509-6-66
A simple theoretical framework for understanding heterogeneous differentiation of CD4+ T cellsCited by: 47
Author(s): Tian Hong, Jianhua Xing, Liwu Li, John J. Tyson
Software Mentions: 1
Published: over 12 years ago
10.1186/s12918-016-0375-z
A computational method for the investigation of multistable systems and its application to genetic switchesCited by: 32
Author(s): Miriam Leon, Mae Woods, Alex J. H. Fedorec, C. Barnes
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pcbi.1004569
An Ovol2-Zeb1 Mutual Inhibitory Circuit Governs Bidirectional and Multi-step Transition between Epithelial and Mesenchymal StatesCited by: 235
Author(s): Tian Hong, Kazuhide Watanabe, Catherine Ha Ta, Alvaro Villarreal-Ponce, Qing Nie, Xing Dai
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pcbi.1002122
A Mathematical Model for the Reciprocal Differentiation of T Helper 17 Cells and Induced Regulatory T CellsCited by: 74
Author(s): Tian Hong, Jianhua Xing, Liwu Li, John J. Tyson
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0092918
Key Bifurcations of Bursting Polyrhythms in 3-Cell Central Pattern GeneratorsCited by: 62
Author(s): Jeremy Wojcik, Justus T. C. Schwabedal, Robert Clewley, Andrey Shilnikov
Software Mentions: 1
Published: over 10 years ago
10.1038/s41598-019-54159-1
Mitochondrial morphology provides a mechanism for energy buffering at synapsesCited by: 47
Author(s): Guadalupe C. García, Thomas M. Bartol, Sébastien Phan, Eric A. Bushong, Guy Perkins, Terrence J. Sejnowski, Mark H. Ellisman, Alexander Skupin
Software Mentions: 1
Published: about 5 years ago