Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fninf.2018.00068

https://doi.org/10.3389/fninf.2018.00068

Cited by: 27
Author(s): Inga Blundell, Romain Brette, Thomas A. Cleland, Thomas G. Close, Daniel Coca, Andrew P. Davison, Sandra Diaz-Pier, Carlos Fernandez Musoles, Padraig Gleeson, Dan F. M. Goodman, Michael L. Hines, Michael Hopkins, Pramod Kumbhar, David Lester, Bóris Marin, Abigail Morrison, Eric Müller, Thomas Nowotny, Alexander Peyser, Dimitri Plotnikov, Paul Richmond, Andrew Rowley, Bernhard Rumpe, Marcel Stimberg, Alan B. Stokes, Adam Tomkins, Guido Trensch, Michael Woodman, Jochen Martin Eppler
Published: over 5 years ago

Software Mentions 16

bioconductor: GENESIS
GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with population structure and/or relatedness
Papers that mentioned: 243
cran: OpenCL
Interface allowing R to use OpenCL
Papers that mentioned: 236
pypi: ANNarchy
Artificial Neural Networks architect
Papers that mentioned: 14
pypi: BaseModel
SqlAlchemy's spuer class
Papers that mentioned: 2
pypi: Brian2GeNN
An interface to use the GeNN framework as a device in Brian 2
Papers that mentioned: 7
pypi: Cython
The Cython compiler for writing C extensions in the Python language.
Papers that mentioned: 118
pypi: Jinja2
A very fast and expressive template engine.
Papers that mentioned: 16
pypi: libSpineML
Python bindings for the SpineML specifications
Papers that mentioned: 1
pypi: NESTML
NESTML is a domain specific language that supports the specification of neuron models in a precise and concise syntax, based on the syntax of Python. Model equations can either be given as a simple string of mathematical notation or as an algorithm written in the built-in procedural language. The equations are analyzed by NESTML to compute an exact solution if possible or use an appropriate numeric solver otherwise.
Papers that mentioned: 10
pypi: NEURON
Empirically-based simulator for modeling neurons and networks of neurons
Papers that mentioned: 766
pypi: NMODL
NEURON Modeling Language Source-to-Source Compiler Framework
Papers that mentioned: 34
pypi: pycast
A Forecasting and Smoothing Library
Papers that mentioned: 1
pypi: pycparser
C parser in Python
Papers that mentioned: 1
pypi: PyDSTool
Python dynamical systems simulation and modeling
Papers that mentioned: 17
pypi: PyNN
A Python package for simulator-independent specification of neuronal network models
Papers that mentioned: 131
pypi: scipy
Fundamental algorithms for scientific computing in Python
Papers that mentioned: 1,071