pypi: NMODL | Projects | Ecosyste.ms: Papers

10.3389/fninf.2018.00068

Code Generation in Computational Neuroscience: A Review of Tools and Techniques
Cited by: 27
Author(s): Inga Blundell, Romain Brette, Thomas A. Cleland, Thomas G. Close, Daniel Coca, Andrew P. Davison, Sandra Diaz-Pier, Carlos Fernandez Musoles, Padraig Gleeson, Dan F. M. Goodman, Michael L. Hines, Michael Hopkins, Pramod Kumbhar, David Lester, Bóris Marin, Abigail Morrison, Eric Müller, Thomas Nowotny, Alexander Peyser, Dimitri Plotnikov, Paul Richmond, Andrew Rowley, Bernhard Rumpe, Marcel Stimberg, Alan B. Stokes, Adam Tomkins, Guido Trensch, Michael Woodman, Jochen Martin Eppler
Software Mentions: 16
Published: about 6 years ago

10.3389/fninf.2013.00041

LFPy: a tool for biophysical simulation of extracellular potentials generated by detailed model neurons
Cited by: 121
Author(s): Henrik Lindén, Espen Hagen, Szymon Łȩski, Espen Skjønsberg Norheim, Klas H. Pettersen, Gaute T. Einevoll
Software Mentions: 10
Published: almost 11 years ago

10.7554/eLife.44494

NetPyNE, a tool for data-driven multiscale modeling of brain circuits
Cited by: 101
Author(s): Salvador Dura‐Bernal, Benjamin A. Suter, Padraig Gleeson, Matteo Carandini, Adrián Quintana, Facundo Rodriguez, David J. Kedziora, George L. Chadderdon, Cliff C. Kerr, Samuel A. Neymotin, Robert A. McDougal, Michael L. Hines, Gordon M. Shepherd, William W. Lytton
Software Mentions: 10
Published: over 5 years ago

10.7554/eLife.47314

Brian 2, an intuitive and efficient neural simulator
Cited by: 372
Author(s): Marcel Stimberg, Romain Brette, Dan F. M. Goodman
Software Mentions: 10
Published: over 5 years ago

10.3389/fninf.2016.00008

PyRhO: A Multiscale Optogenetics Simulation Platform
Cited by: 20
Author(s): Benjamin D. Evans, Sarah Jarvis, Simon R. Schultz, Konstantin Nikolić
Software Mentions: 9
Published: over 8 years ago

10.3389/fninf.2017.00046

Software for Brain Network Simulations: A Comparative Study
Cited by: 42
Author(s): Ruben A. Tikidji-Hamburyan, Vikram K. Narayana, Zeki Bozkuş, Tarek El‐Ghazawi
Software Mentions: 9
Published: over 7 years ago

10.3389/fninf.2013.00028

Reaction-diffusion in the NEURON simulator
Cited by: 52
Author(s): Robert A. McDougal, Michael L. Hines, William W. Lytton
Software Mentions: 7
Published: almost 12 years ago

10.1371/journal.pcbi.1002521

The Layer-Oriented Approach to Declarative Languages for Biological Modeling
Cited by: 10
Author(s): Ivan Raikov, Erik De Schutter
Software Mentions: 6
Published: over 12 years ago

10.3389/fncom.2014.00139

Diffusion approximation-based simulation of stochastic ion channels: which method to use?
Cited by: 8
Author(s): Danilo Pezo, Daniel Soudry, Patricio Orio
Software Mentions: 6
Published: about 10 years ago

10.1371/journal.pcbi.1000815

NeuroML: A Language for Describing Data Driven Models of Neurons and Networks with a High Degree of Biological Detail
Cited by: 284
Author(s): Padraig Gleeson, Sharon Crook, Robert C. Cannon, Michael L. Hines, Guy O Billings, Matteo Farinella, Thomas M. Morse, Andrew P. Davison, Subhasis Ray, Upinder S. Bhalla, Simon R Barnes, Yoana D Dimitrova, R. Angus Silver
Software Mentions: 5
Published: over 14 years ago

10.3389/fninf.2018.00050

Automatically Selecting a Suitable Integration Scheme for Systems of Differential Equations in Neuron Models
Cited by: 8
Author(s): Inga Blundell, Dimitri Plotnikov, Jochen Martin Eppler, Abigail Morrison
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pcbi.1008114

HippoUnit: A software tool for the automated testing and systematic comparison of detailed models of hippocampal neurons based on electrophysiological data
Cited by: 9
Author(s): Sára Saray, Christian Rössert, Shailesh Appukuttan, Rosanna Migliore, Paola Vitale, Carmen Alina Lupaşcu, Luca Bologna, Werner Van Geit, Armando Romani, Andrew Davison, Eilif Müller, Tamás F. Freund, Szabolcs Káli
Software Mentions: 4
Published: almost 4 years ago

10.3389/fninf.2014.00006

Equation-oriented specification of neural models for simulations
Cited by: 120
Author(s): Marcel Stimberg, Dan F. M. Goodman, Victor Benichoux, Romain Brette
Software Mentions: 4
Published: almost 11 years ago

10.1186/1472-6920-13-70

Teaching and learning the Hodgkin-Huxley model based on software developed in NEURON’s programming language hoc
Cited by: 6
Author(s): Oscar E Hernández, Eduardo Zurek
Software Mentions: 4
Published: over 11 years ago

10.1371/journal.pcbi.1002022

Mechanisms of Magnetic Stimulation of Central Nervous System Neurons
Cited by: 128
Author(s): Tamar Pashut, Shuki Wolfus, A. Friedman, Michal Lavidor, Izhar Bar‐Gad, Y. Yeshurun, Alon Korngreen
Software Mentions: 3
Published: over 13 years ago

10.3389/fninf.2019.00063

CoreNEURON : An Optimized Compute Engine for the NEURON Simulator
Cited by: 61
Author(s): Pramod Kumbhar, Michael L. Hines, Jeremy Fouriaux, A. G. Ovcharenko, James G. King, Fabien Delalondre, Felix Schürmann
Software Mentions: 3
Published: about 5 years ago

10.3389/fncom.2016.00065

Computational Modeling of Single Neuron Extracellular Electric Potentials and Network Local Field Potentials using LFPsim
Cited by: 45
Author(s): Harilal Parasuram, Bipin Nair, Egidio D’Angelo, Michael L. Hines, Giovanni Naldi, Shyam Diwakar
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pcbi.0030169

A Numerical Approach to Ion Channel Modelling Using Whole-Cell Voltage-Clamp Recordings and a Genetic Algorithm
Cited by: 70
Author(s): Meron Gurkiewicz, Alon Korngreen
Software Mentions: 3
Published: about 17 years ago

10.3389/fninf.2019.00069

Enabling Large-Scale Simulations With the GENESIS Neuronal Simulator
Cited by: 3
Author(s): Joshua C. Crone, Manuel M. Vindiola, Alfred B. Yu, David L. Boothe, David Beeman, Kelvin S. Oie, Piotr J. Franaszczuk
Software Mentions: 3
Published: about 5 years ago

10.7554/eLife.26517

T2N as a new tool for robust electrophysiological modeling demonstrated for mature and adult-born dentate granule cells
Cited by: 32
Author(s): Marcel Beining, Lucas A. Mongiat, Stephan W. Schwarzacher, Hermann Cuntz, Paul Jedlicka
Software Mentions: 2
Published: almost 7 years ago

10.1186/1471-2202-10-131

A novel role of dendritic gap junction and mechanisms underlying its interaction with thalamocortical conductance in fast spiking inhibitory neurons
Cited by: 3
Author(s): Qian‐Quan Sun
Software Mentions: 2
Published: about 15 years ago

10.1186/1471-2202-7-7

Non-topographical contrast enhancement in the olfactory bulb
Cited by: 167
Author(s): Thomas A. Cleland, Praveen Sethupathy
Software Mentions: 2
Published: almost 19 years ago

10.1371/journal.pone.0006586

Selective Interaction of Syntaxin 1A with KCNQ2: Possible Implications for Specific Modulation of Presynaptic Activity
Cited by: 33
Author(s): Noa Regev, Nurit Degani-Katzav, Alon Korngreen, Adi Etzioni, Sivan Siloni, Alessandro Alaimo, Dodo Chikvashvili, Álvaro Villarroel, Bernard Attali, Ilana Lotan
Software Mentions: 2
Published: over 15 years ago

10.1371/journal.pone.0056148

The Periglomerular Cell of the Olfactory Bulb and its Role in Controlling Mitral Cell Spiking: A Computational Model
Cited by: 17
Author(s): Denise C. Arruda, Rodrigo Publio, Antônio C. Roque
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0069798

Pathological Neural Attractor Dynamics in Slowly Growing Gliomas Supports an Optimal Time Frame for White Matter Plasticity
Cited by: 30
Author(s): Krisztina Szalisznyó, David Silverstein, Hugues Duffau, Anja Smits
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0200712

A biophysically constrained computational model of the action potential of mouse urinary bladder smooth muscle
Cited by: 15
Author(s): Chitaranjan Mahapatra, Keith L. Brain, Rohit Manchanda
Software Mentions: 2
Published: over 6 years ago

10.3389/fncel.2019.00203

The Slow Depolarization Following Individual Spikes in Thin, Unmyelinated Axons in Mammalian Cortex
Cited by: 3
Author(s): Morten Raastad
Software Mentions: 2
Published: over 5 years ago

10.3389/fncel.2015.00432

Non-linear leak currents affect mammalian neuron physiology
Cited by: 5
Author(s): Shiwei Huang, Sungho Hong, Erik De Schutter
Software Mentions: 2
Published: about 9 years ago

10.3389/fncom.2013.00049

A model of electrophysiological heterogeneity in periglomerular cells
Cited by: 12
Author(s): Praveen Sethupathy, Daniel B. Rubin, Guoshi Li, Thomas A. Cleland
Software Mentions: 2
Published: almost 12 years ago

10.3389/fncir.2015.00014

Inhibitory properties underlying non-monotonic input-output relationship in low-frequency spherical bushy neurons of the gerbil
Cited by: 18
Author(s): Thomas Kuenzel, Jana Nerlich, Hermann Wagner, Rudolf Rübsamen, Ivan Milenković
Software Mentions: 2
Published: over 9 years ago

10.3389/fnana.2016.00008

Anatomically Detailed and Large-Scale Simulations Studying Synapse Loss and Synchrony Using NeuroBox
Cited by: 10
Author(s): Markus Breit, Martin Stepniewski, Stephan Grein, Pascal Gottmann, Lukas Reinhardt, Gillian Queisser
Software Mentions: 2
Published: almost 9 years ago

10.3389/fphar.2016.00157

Multitarget Multiscale Simulation for Pharmacological Treatment of Dystonia in Motor Cortex
Cited by: 27
Author(s): Samuel A. Neymotin, Salvador Dura‐Bernal, Péter L. Lakatos, Terence D. Sanger, William W. Lytton
Software Mentions: 2
Published: over 8 years ago

10.1007/s10827-018-0684-x

Analytical modelling of temperature effects on an AMPA-type synapse
Cited by: 6
Author(s): Dominik S. Kufel, Grzegorz M. Wójcik
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-53662-9

Phenomenological models of NaV1.5. A side by side, procedural, hands-on comparison between Hodgkin-Huxley and kinetic formalisms
Cited by: 6
Author(s): Emilio Andreozzi, Ilaria Carannante, Giovanni D’Addio, Mario Cesarelli, Pietro Balbi
Software Mentions: 2
Published: almost 5 years ago

Ecosyste.ms: Papers

Projects: pypi: NMODL

Papers Mentioning NMODL 34