Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: classify
https://packages.ecosyste.ms/registries/pypi.org/packages/classify
Generate concrete Class documentation for Python Classes.
6 versions
Latest release: about 11 years ago
389 downloads last month
Papers Mentioning classify 18
10.3389/fpls.2019.00910
Characterization of the Wood Mycobiome of Vitis vinifera in a Vineyard Affected by Esca. Spatial Distribution of Fungal Communities and Their Putative Relation With Leaf SymptomsCited by: 57
Author(s): Giovanni Del Frari, Alex Gobbi, Marie Rønne Aggerbeck, Helena Oliveira, Lars Hestbjerg Hansen, Ricardo B. Ferreira
Software Mentions: 9
Published: over 5 years ago
10.1371/journal.pone.0250344
One dog’s waste is another dog’s wealth: A pilot study of fecal microbiota transplantation in dogs with acute hemorrhagic diarrhea syndromeCited by: 13
Author(s): Arnon Gal, Patrick C. Barko, Patrick J. Biggs, Kristene Gedye, Anne C. Midwinter, David A. Williams, Richard K. Burchell, P. Pazzi
Software Mentions: 7
Published: over 3 years ago
10.3389/fpls.2019.01405
Fungicides and the Grapevine Wood Mycobiome: A Case Study on Tracheomycotic Ascomycete Phaeomoniella chlamydospora Reveals Potential for Two Novel Control StrategiesCited by: 16
Author(s): Giovanni Del Frari, Alex Gobbi, Marie Rønne Aggerbeck, Helena Oliveira, Lars Hestbjerg Hansen, Ricardo B. Ferreira
Software Mentions: 7
Published: about 5 years ago
10.1128/mSphere.01261-20
Predominance of Atopobium vaginae at Midtrimester: a Potential Indicator of Preterm Birth Risk in a Nigerian CohortCited by: 13
Author(s): Nkechi Martina Odogwu, Jun Chen, Chinedum Amara Onebunne, Patricio Jeraldo, Lu Yang, Stephen Johnson, Funmilola A. Ayeni, Marina Walther-Antonio, Oladapo Olayemi, Nicholas Chia, Akinyinka Omigbodun
Software Mentions: 6
Published: over 3 years ago
10.3390/microorganisms8060875
Recovery of Vaginal Microbiota after Standard Treatment for Bacterial Vaginosis Infection: An Observational StudyCited by: 16
Author(s): Liisa Lehtoranta, Ashley A. Hibberd, Jenni Reimari, Jouni Junnila, Nicolas Yeung, Johanna Maukonen, G. Crawford, Arthur C. Ouwehand
Software Mentions: 5
Published: over 4 years ago
10.3390/microorganisms8071032
Structures of the Skin Microbiome and Mycobiome Depending on Skin SensitivityCited by: 10
Author(s): Hye Lim Keum, Hanbyul Kim, Hye-Jin Kim, Taehun Park, Seoyung Kim, Shi An, Woo Jun Sul
Software Mentions: 5
Published: over 4 years ago
10.1371/journal.pone.0200979
Quantitative and qualitative evaluation of the impact of the G2 enhancer, bead sizes and lysing tubes on the bacterial community composition during DNA extraction from recalcitrant soil core samples based on community sequencing and qPCRCited by: 19
Author(s): Alex Gobbi, Rui G. Santini, Elisa Filippi, Lea Ellegaard-Jensen, Carsten Suhr Jacobsen, Lars H. Hansen
Software Mentions: 4
Published: over 5 years ago
10.1371/journal.pone.0237556
Evaluation of DNA extraction protocols from liquid-based cytology specimens for studying cervical microbiotaCited by: 4
Author(s): Takeo Shibata, Mayumi Nakagawa, Hannah N. Coleman, Sarah M. Owens, William W. Greenfield, Toshiyuki Sasagawa, Michael S. Robeson
Software Mentions: 4
Published: about 3 years ago
10.3389/fmicb.2021.617151
Rapid Changes in the Phytoplankton Community of a Subtropical, Shallow, Hypereutrophic Lake During the Rainy SeasonCited by: 19
Author(s): Osiris Díaz-Torres, José de Anda, Ofelia Yadira Lugo-Melchor, Adriana Pacheco, Danielle A. Orozco-Nunnelly, Harvey Shear, Carolina Senés‐Guerrero, Misael Sebastian Gradilla‐Hernández
Software Mentions: 4
Published: over 3 years ago
10.3389/fmicb.2020.00198
Under the Christmas Tree: Belowground Bacterial Associations With Abies nordmanniana Across Production Systems and Plant DevelopmentCited by: 7
Author(s): Adriana M. García-Lemos, Alex Gobbi, Mette Haubjerg Nicolaisen, Lars Hansen, Thomas Roitsch, Bjarke Veierskov, Ole Nybroe
Software Mentions: 4
Published: over 4 years ago
10.7554/eLife.48479
High fat diet induces microbiota-dependent silencing of enteroendocrine cellsCited by: 68
Author(s): Lihua Ye, Olaf Mueller, Jennifer Bagwell, Michel Bagnat, Rodger A. Liddle, John F. Rawls
Software Mentions: 3
Published: almost 5 years ago
10.1093/gigascience/giaa029
Continuous chromosome-scale haplotypes assembled from a single interspecies F1 hybrid of yak and cattleCited by: 40
Author(s): Edward S. Rice, Sergey Koren, Arang Rhie, Michael P. Heaton, Theodore S. Kalbfleisch, Timothy Hardy, Peter H. Hackett, Derek M. Bickhart, Benjamin D. Rosen, B. L. Vander Ley, Nicholas Maurer, Edward Green, Adam M. Phillippy, Jessica L. Petersen, Timothy P. L. Smith
Software Mentions: 3
Published: over 4 years ago
10.1038/s41598-020-78934-7
DNA metabarcoding uncovers fungal diversity in soils of protected and non-protected areas on Deception Island, AntarcticaCited by: 30
Author(s): Luiz Henrique Rosa, Thamar Holanda da Silva, Mayara Baptistucci Ogaki, Otávio Henrique Bezerra Pinto, Michael Stech, Peter Convey, Micheline Carvalho‐Silva, Carlos A. Rosa, Paulo Eduardo Aguiar Saraiva Câmara
Software Mentions: 3
Published: almost 4 years ago
10.1038/s41598-020-73913-4
The wasted chewing gum bacteriomeCited by: 7
Author(s): Leila Satari, Alba Guillén, Àngela Vidal‐Verdú, Manuel Porcar
Software Mentions: 2
Published: about 4 years ago
10.1186/s13104-021-05520-z
16S rRNA sequencing of samples from universal stool bank donorsCited by: 0
Author(s): Marina Santiago, Scott W. Olesen
Software Mentions: 2
Published: over 3 years ago
10.3389/fmicb.2021.668240
Shaping of the Present-Day Deep Biosphere at Chicxulub by the Impact Catastrophe That Ended the CretaceousCited by: 5
Author(s): Charles S. Cockell, Bettina Schaefer, Cornelia Wuchter, Marco J. L. Coolen, Kliti Grice, Luzie Schnieders, J. V. Morgan, S. P. S. Gulick, A. Wittmann, Johanna Lofi, G. L. Christeson, D. A. Kring, Michael T. Whalen, Timothy J. Bralower, G. R. Osinski, Philippe Claeys, Pim Kaskes, Sietze J. de Graaff, Thomas Déhais, Steven Goderis, Natali Hernandez Becerra, Sophie L. Nixon, Iodp‐Icdp Expedition Scientists
Software Mentions: 2
Published: over 3 years ago
10.1080/19490976.2021.1882928
<i>Helicobacter hepaticus</i> is required for immune targeting of bacterial heat shock protein 60 and fatal colitis in miceCited by: 7
Author(s): Verena Friedrich, Ignasi Forné, Dana Matzek, Diana Ring, Bastian Popper, Lara Jochum, Stefanie Spriewald, Tobias Straub, Axel Imhof, Anne Krug, Bärbel Stecher, Thomas Brocker
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pone.0102879
Bacterial Community Composition of Size-Fractioned Aggregates within the Phycosphere of Cyanobacterial Blooms in a Eutrophic Freshwater LakeCited by: 99
Author(s): Haiyuan Cai, Helong Jiang, Lee R. Krumholz, Zhi‐gang Yang
Software Mentions: 1
Published: over 10 years ago