Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: DAIME

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/DAIME

Effects of Changing Deposition Rates
8 versions
Latest release: over 4 years ago
216 downloads last month

Papers Mentioning DAIME 18

Bottled aqua incognita: microbiota assembly and dissolved organic matter diversity in natural mineral waters
Cited by: 23
Author(s): Céline Lesaulnier, Craig W. Herbold, Claus Pelikan, David Berry, Cédric Gérard, Xavier Le Coz, Sophie Gagnot, Jutta Niggemann, Thorsten Dittmar, Gabriel Singer, Alexander Loy
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0112853

High-Frequency Rugose Exopolysaccharide Production by Vibrio cholerae Strains Isolated in Haiti
Cited by: 3
Author(s): Mustafizur Rahman, Mohammad Jubair, Meer T. Alam, Thomas A. Weppelmann, Taj Azarian, Marco Salemi, Ilya Sakharuk, Mohammed H. Rashid, Judith A. Johnson, Mahmuda Yasmin, J. Glenn Morris, Afsar Ali
Software Mentions: 3
Published: about 10 years ago

10.1038/ismej.2016.192

Cultivation and characterization of Candidatus Nitrosocosmicus exaquare, an ammonia-oxidizing archaeon from a municipal wastewater treatment system
Cited by: 157
Author(s): Laura A. Sauder, Mads Albertsen, Katja Engel, Jasmin Schwarz, Per Halkjær Nielsen, Michael Wagner, Josh D. Neufeld
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0206255

In situ visualisation of the abundant Chloroflexi populations in full-scale anaerobic digesters and the fate of immigrating species
Cited by: 27
Author(s): Francesca Petriglieri, Marta Nierychlo, Per Halkjær Nielsen, Simon Jon McIlroy
Software Mentions: 1
Published: about 6 years ago

10.1186/s40793-021-00380-3

Metagenome-assembled genomes infer potential microbial metabolism in alkaline sulphidic tailings
Cited by: 6
Author(s): Wenjun Li, Xiaofang Li
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2020.00063

“Candidatus Galacturonibacter soehngenii” Shows Acetogenic Catabolism of Galacturonic Acid but Lacks a Canonical Carbon Monoxide Dehydrogenase/Acetyl-CoA Synthase Complex
Cited by: 6
Author(s): Laura C. Valk, Martijn Diender, Gerben Roelandt Stouten, Jette Fischer Petersen, Per Halkjær Nielsen, Morten Simonsen Dueholm, Jack T. Pronk, Mark C.M. van Loosdrecht
Software Mentions: 1
Published: almost 5 years ago

10.3389/fmicb.2018.00109

Changes in Microbial Energy Metabolism Measured by Nanocalorimetry during Growth Phase Transitions
Cited by: 22
Author(s): Alberto Robador, Douglas E. LaRowe, Steven E. Finkel, Jan P. Amend, Kenneth H. Nealson
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2021.666522

Pairwise Interactions of Three Related Pseudomonas Species in Plant Roots and Inert Surfaces
Cited by: 2
Author(s): Nesli Tovi, Tomer Orevi, Maor Grinberg, Nadav Kashtan, Yitzhak Hadar, Dror Minz
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2015.01468

Infiltration of Matrix-Non-producers Weakens the Salmonella Biofilm and Impairs Its Antimicrobial Tolerance and Pathogenicity
Cited by: 24
Author(s): C. S. Srinandan, Monalisha Elango, Divya Prakash Gnanadhas, Dipshikha Chakravortty
Software Mentions: 1
Published: almost 9 years ago

10.3389/fmicb.2021.643950

High Diversity and Functional Potential of Undescribed “Acidobacteriota” in Danish Wastewater Treatment Plants
Cited by: 44
Author(s): Jannie Munk Kristensen, Caitlin M. Singleton, Lee-Ann Clegg, Francesca Petriglieri, Per Halkjær Nielsen
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2016.00454

Nanocalorimetric Characterization of Microbial Activity in Deep Subsurface Oceanic Crustal Fluids
Cited by: 16
Author(s): Alberto Robador, Douglas E. LaRowe, Sean P. Jungbluth, Hsiang Ju Lin, Michael S. Rappé, Kenneth H. Nealson, Jan P. Amend
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2014.00094

Scanning a microhabitat: plant-microbe interactions revealed by confocal laser microscopy
Cited by: 52
Author(s): Massimiliano Cardinale
Software Mentions: 1
Published: over 10 years ago

10.1038/srep08706

A laboratory investigation of interactions between denitrifying anaerobic methane oxidation (DAMO) and anammox processes in anoxic environments
Cited by: 63
Author(s): Shihu Hu, Raymond Jianxiong Zeng, Mohamed Fauzi Haroon, Jürg Keller, Paul Lant, Gene W. Tyson, Zhiguo Yuan
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-021-98738-7

Aedes fluviatilis cell lines as new tools to study metabolic and immune interactions in mosquito-Wolbachia symbiosis
Cited by: 4
Author(s): Christiano Calixto Conceição, Jhenifer Nascimento da Silva, Angélica Arcanjo, Cíntia Lopes Nogueira, Leonardo Abreu, Pedro L. Oliveira, Kátia C. Gondim, Bruno Moraes, Stephanie Serafim de Carvalho, Renato Martins da Silva, Itabajara da Silva Vaz, Luciano Andrade Moreira, Carlos Logullo
Software Mentions: 1
Published: about 3 years ago

10.3390/bioengineering2010035

Microbial Community Shifts during Biogas Production from Biowaste and/or Propionate
Cited by: 4
Author(s): Chaoran Li, Christoph Moertelmaier, Josef Winter, Claudia Gallert
Software Mentions: 1
Published: almost 10 years ago

10.3390/ijms15010850

Changing Microspatial Patterns of Sulfate-Reducing Microorganisms (SRM) during Cycling of Marine Stromatolite Mats
Cited by: 6
Author(s): Alexandru-Ionuţ Petrişor, Sandra Szyjka, Tomohiro Kawaguchi, Pieter T. Visscher, R. Sean Norman, Alan W. Decho
Software Mentions: 1
Published: almost 11 years ago

10.1080/13102818.2014.947725

Microbial community development of biofilm in Amaranth decolourization technology analysed by FISH
Cited by: 9
Author(s): Mihaela Belouhova, Irina Schneider, Stoyan Chakarov, Iliana Ivanova, Yana Topalova
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0092883

Vibrio cholerae Persisted in Microcosm for 700 Days Inhibits Motility but Promotes Biofilm Formation in Nutrient-Poor Lake Water Microcosms
Cited by: 11
Author(s): Mohammad Jubair, Kalina R. Atanasova, Mustafizur Rahman, Karl E. Klose, Mahmuda Yasmin, Özlem Yılmaz, J. Glenn Morris, Afsar Ali
Software Mentions: 1
Published: over 10 years ago