Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: DAIME
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/DAIME
Effects of Changing Deposition Rates
8 versions
Latest release: over 4 years ago
216 downloads last month
Papers Mentioning DAIME 18
10.1186/s40168-017-0344-9
Bottled aqua incognita: microbiota assembly and dissolved organic matter diversity in natural mineral watersCited by: 23
Author(s): Céline Lesaulnier, Craig W. Herbold, Claus Pelikan, David Berry, Cédric Gérard, Xavier Le Coz, Sophie Gagnot, Jutta Niggemann, Thorsten Dittmar, Gabriel Singer, Alexander Loy
Software Mentions: 4
Published: almost 7 years ago
10.1371/journal.pone.0112853
High-Frequency Rugose Exopolysaccharide Production by Vibrio cholerae Strains Isolated in HaitiCited by: 3
Author(s): Mustafizur Rahman, Mohammad Jubair, Meer T. Alam, Thomas A. Weppelmann, Taj Azarian, Marco Salemi, Ilya Sakharuk, Mohammed H. Rashid, Judith A. Johnson, Mahmuda Yasmin, J. Glenn Morris, Afsar Ali
Software Mentions: 3
Published: almost 10 years ago
10.1038/ismej.2016.192
Cultivation and characterization of Candidatus Nitrosocosmicus exaquare, an ammonia-oxidizing archaeon from a municipal wastewater treatment systemCited by: 157
Author(s): Laura A. Sauder, Mads Albertsen, Katja Engel, Jasmin Schwarz, Per Halkjær Nielsen, Michael Wagner, Josh D. Neufeld
Software Mentions: 2
Published: over 7 years ago
10.1371/journal.pone.0206255
In situ visualisation of the abundant Chloroflexi populations in full-scale anaerobic digesters and the fate of immigrating speciesCited by: 27
Author(s): Francesca Petriglieri, Marta Nierychlo, Per Halkjær Nielsen, Simon Jon McIlroy
Software Mentions: 1
Published: almost 6 years ago
10.1186/s40793-021-00380-3
Metagenome-assembled genomes infer potential microbial metabolism in alkaline sulphidic tailingsCited by: 6
Author(s): Wenjun Li, Xiaofang Li
Software Mentions: 1
Published: over 3 years ago
10.3389/fmicb.2020.00063
“Candidatus Galacturonibacter soehngenii” Shows Acetogenic Catabolism of Galacturonic Acid but Lacks a Canonical Carbon Monoxide Dehydrogenase/Acetyl-CoA Synthase ComplexCited by: 6
Author(s): Laura C. Valk, Martijn Diender, Gerben Roelandt Stouten, Jette Fischer Petersen, Per Halkjær Nielsen, Morten Simonsen Dueholm, Jack T. Pronk, Mark C.M. van Loosdrecht
Software Mentions: 1
Published: over 4 years ago
10.3389/fmicb.2018.00109
Changes in Microbial Energy Metabolism Measured by Nanocalorimetry during Growth Phase TransitionsCited by: 22
Author(s): Alberto Robador, Douglas E. LaRowe, Steven E. Finkel, Jan P. Amend, Kenneth H. Nealson
Software Mentions: 1
Published: over 6 years ago
10.3389/fmicb.2021.666522
Pairwise Interactions of Three Related Pseudomonas Species in Plant Roots and Inert SurfacesCited by: 2
Author(s): Nesli Tovi, Tomer Orevi, Maor Grinberg, Nadav Kashtan, Yitzhak Hadar, Dror Minz
Software Mentions: 1
Published: about 3 years ago
10.3389/fmicb.2015.01468
Infiltration of Matrix-Non-producers Weakens the Salmonella Biofilm and Impairs Its Antimicrobial Tolerance and PathogenicityCited by: 24
Author(s): C. S. Srinandan, Monalisha Elango, Divya Prakash Gnanadhas, Dipshikha Chakravortty
Software Mentions: 1
Published: over 8 years ago
10.3389/fmicb.2021.643950
High Diversity and Functional Potential of Undescribed “Acidobacteriota” in Danish Wastewater Treatment PlantsCited by: 44
Author(s): Jannie Munk Kristensen, Caitlin M. Singleton, Lee-Ann Clegg, Francesca Petriglieri, Per Halkjær Nielsen
Software Mentions: 1
Published: over 3 years ago
10.3389/fmicb.2016.00454
Nanocalorimetric Characterization of Microbial Activity in Deep Subsurface Oceanic Crustal FluidsCited by: 16
Author(s): Alberto Robador, Douglas E. LaRowe, Sean P. Jungbluth, Hsiang Ju Lin, Michael S. Rappé, Kenneth H. Nealson, Jan P. Amend
Software Mentions: 1
Published: over 8 years ago
10.3389/fmicb.2014.00094
Scanning a microhabitat: plant-microbe interactions revealed by confocal laser microscopyCited by: 52
Author(s): Massimiliano Cardinale
Software Mentions: 1
Published: over 10 years ago
10.1038/srep08706
A laboratory investigation of interactions between denitrifying anaerobic methane oxidation (DAMO) and anammox processes in anoxic environmentsCited by: 63
Author(s): Shihu Hu, Raymond Jianxiong Zeng, Mohamed Fauzi Haroon, Jürg Keller, Paul Lant, Gene W. Tyson, Zhiguo Yuan
Software Mentions: 1
Published: over 9 years ago
10.1038/s41598-021-98738-7
Aedes fluviatilis cell lines as new tools to study metabolic and immune interactions in mosquito-Wolbachia symbiosisCited by: 4
Author(s): Christiano Calixto Conceição, Jhenifer Nascimento da Silva, Angélica Arcanjo, Cíntia Lopes Nogueira, Leonardo Abreu, Pedro L. Oliveira, Kátia C. Gondim, Bruno Moraes, Stephanie Serafim de Carvalho, Renato Martins da Silva, Itabajara da Silva Vaz, Luciano Andrade Moreira, Carlos Logullo
Software Mentions: 1
Published: almost 3 years ago
10.3390/bioengineering2010035
Microbial Community Shifts during Biogas Production from Biowaste and/or PropionateCited by: 4
Author(s): Chaoran Li, Christoph Moertelmaier, Josef Winter, Claudia Gallert
Software Mentions: 1
Published: over 9 years ago
10.3390/ijms15010850
Changing Microspatial Patterns of Sulfate-Reducing Microorganisms (SRM) during Cycling of Marine Stromatolite MatsCited by: 6
Author(s): Alexandru-Ionuţ Petrişor, Sandra Szyjka, Tomohiro Kawaguchi, Pieter T. Visscher, R. Sean Norman, Alan W. Decho
Software Mentions: 1
Published: over 10 years ago
10.1080/13102818.2014.947725
Microbial community development of biofilm in Amaranth decolourization technology analysed by FISHCited by: 9
Author(s): Mihaela Belouhova, Irina Schneider, Stoyan Chakarov, Iliana Ivanova, Yana Topalova
Software Mentions: 1
Published: about 10 years ago
10.1371/journal.pone.0092883
Vibrio cholerae Persisted in Microcosm for 700 Days Inhibits Motility but Promotes Biofilm Formation in Nutrient-Poor Lake Water MicrocosmsCited by: 11
Author(s): Mohammad Jubair, Kalina R. Atanasova, Mustafizur Rahman, Karl E. Klose, Mahmuda Yasmin, Özlem Yılmaz, J. Glenn Morris, Afsar Ali
Software Mentions: 1
Published: over 10 years ago