Projects: cran: TGS
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/TGS
Rapid Reconstruction of Time-Varying Gene Regulatory Networks
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Latest release: almost 6 years ago
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Saptarshi Pyne (user)
Postdoc, Roy Lab, Wisconsin Institute for Discovery. Computational Network Biology, Probabilistic Graphical Models. Academic
Postdoc, Roy Lab, Wisconsin Institute for Discovery. Computational Network Biology, Probabilistic Graphical Models. Academic
Science Score: 100/100
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Papers Mentioning TGS 18
10.1038/srep43793
Hybrid sequencing and map finding (HySeMaFi): optional strategies for extensively deciphering gene splicing and expression in organisms without reference genomeCited by: 24
Author(s): Guogui Ning, Cheng Xu, Ping Luo, Fan Liang, Zhen Wang, Guoliang Yu, Xin Li, Depeng Wang, Manzhu Bao
Software Mentions: 5
Published: almost 9 years ago
10.1038/s41598-020-77520-1
Time-course profiling of bovine alphaherpesvirus 1.1 transcriptome using multiplatform sequencingCited by: 8
Author(s): Norbert Moldován, Gábor Torma, Gábor Gulyás, Ákos Hornyák, Zoltán Zádori, Victoria A Jefferson, Zsolt Csabai, Miklós Boldogkői, Dóra Tombácz, Florencia Meyer, Zsolt Boldogköi
Software Mentions: 4
Published: over 5 years ago
10.1186/s40748-021-00131-9
Methods for exploring the faecal microbiome of premature infants: a reviewCited by: 3
Author(s): Jacob A. F. Westaway, Roger Huerlimann, Catherine M. Miller, Yoga Kandasamy, Robert Norton, Donna Rudd
Software Mentions: 3
Published: almost 5 years ago
10.1186/1471-2105-7-S2-S8
Independent Component Analysis-motivated Approach to Classificatory Decomposition of Cortical Evoked PotentialsCited by: 6
Author(s): Tomasz G. Smolinski, Roger Buchanan, Grzegorz M. Boratyn, Mariofanna Milanova, Astrid A. Prinz
Software Mentions: 2
Published: over 19 years ago
10.1186/s12862-017-0908-0
Low genetic but high morphological variation over more than 1000 km coastline refutes omnipresence of cryptic diversity in marine nematodesCited by: 21
Author(s): Daniel Oliveira, Wilfrida Decraemer, Tom Moens, Giovanni dos Santos, Sofie Derycke
Software Mentions: 2
Published: almost 9 years ago
10.3390/biom11081111
Analyzing Modern Biomolecules: The Revolution of Nucleic-Acid Sequencing – ReviewCited by: 10
Author(s): Gabriel Dorado, Sergio Gálvez, Teresa Rosales, Víctor F. Vásquez, Pilar Hernández
Software Mentions: 2
Published: over 4 years ago
10.3389/fpls.2017.00006
Identification of Submergence-Responsive MicroRNAs and Their Targets Reveals Complex MiRNA-Mediated Regulatory Networks in Lotus (Nelumbo nucifera Gaertn)Cited by: 22
Author(s): Qijiang Jin, Yingchun Xu, Neil S. Mattson, Xin Li, Bei Wang, Xiao Zhang, Hongwei Jiang, Xiaojing Liu, Yanjie Wang, Dongrui Yao
Software Mentions: 2
Published: about 9 years ago
10.3390/jcm9123811
Augmented Realities, Artificial Intelligence, and Machine Learning: Clinical Implications and How Technology Is Shaping the Future of MedicineCited by: 15
Author(s): Gaby Moawad, Jad Elkhalil, Jordan S. Klebanoff, Sara Rahman, Nassir Habib, İbrahim Alkatout
Software Mentions: 2
Published: over 5 years ago
10.1038/emi.2017.88
A comparative study on the characterization of hepatitis B virus quasispecies by clone-based sequencing and third-generation sequencingCited by: 8
Author(s): Jing Li, Mingjie Wang, Demin Yu, Yue Han, Zhitao Yang, Lei Wang, Xinxin Zhang, Feng Liu
Software Mentions: 1
Published: about 9 years ago
10.1186/s40246-017-0118-2
Evaluating somatic tumor mutation detection without matched normal samplesCited by: 38
Author(s): Jamie K. Teer, Yonghong Zhang, Lu Chen, Eric A. Welsh, W. Douglas Cress, Steven A. Eschrich, Anders Berglund
Software Mentions: 1
Published: over 8 years ago
10.3390/ijms22063080
miRNA Regulatory Functions in Farm Animal Diseases, and Biomarker Potentials for Effective TherapiesCited by: 24
Author(s): Duy Ngoc, Pier-Luc Dudemaine, Manas Mathur, Prashanth Suravajhala, Xin Zhao, Eveline M. Ibeagha‐Awemu
Software Mentions: 1
Published: almost 5 years ago
10.1186/s12887-021-02648-6
Novel mutations in the PHKB gene in an iranian girl with severe liver involvement and glycogen storage disease type IX: a case report and review of literatureCited by: 3
Author(s): Zahra Beyzaei, Fatih Süheyl Ezgü, Bita Geramizadeh, Alireza Alborzi, Alireza Shojazadeh
Software Mentions: 1
Published: almost 5 years ago
10.1038/s41598-019-49219-5
Whole-genome sequencing-based epidemiological analysis of anti-tuberculosis drug resistance genes in Japan in 2007: Application of the Genome Research for Asian Tuberculosis (GReAT) databaseCited by: 9
Author(s): Takemasa Takii, Kouhei Seki, Yasutaka Wakabayashi, Yuta Morishige, Tsuyoshi Sekizuka, Akifumi Yamashita, Kengo Kato, Kazuhiro Uchimura, Akihiro Ohkado, Naoto Keicho, Satoshi Mitarai, Makoto Kuroda, Seiya Kato
Software Mentions: 1
Published: over 6 years ago
10.1186/s12864-017-3552-6
A vast genomic deletion in the C56BL/6 genome affects different genes within the Ifi200 cluster on chromosome 1 and mediates obesity and insulin resistanceCited by: 6
Author(s): Heike Vogel, Markus Jähnert, Mandy Stadion, Daniela Matzke, Stephan Scherneck, Annette Schürmann
Software Mentions: 1
Published: about 9 years ago
10.3390/s17051095
A Case Study of Improving Yield Prediction and Sulfur Deficiency Detection Using Optical Sensors and Relationship of Historical Potato Yield with Weather Data in MaineCited by: 28
Author(s): Lakesh K. Sharma, Sukhwinder K. Bali, J. D. Dwyer, Andrew B. Plant, Arnab Bhowmik
Software Mentions: 1
Published: almost 9 years ago
10.1186/2193-1801-3-145
Solution of underdetermined systems of equations with gridded a priori constraintsCited by: 5
Author(s): Stathis C. Stiros, Vasso Saltogianni
Software Mentions: 1
Published: almost 12 years ago
10.1051/parasite/2019052
Performance of seven commercial automated assays for the detection of low levels of anti-<i>Toxoplasma</i> IgG in French immunocompromised patientsCited by: 12
Author(s): Tiphaine Douet, Catherine Armengol, Éléna Charpentier, Pamela Chauvin, Sophie Cassaing, Xavier Iriart, Antoine Berry, Judith Fillaux
Software Mentions: 1
Published: about 7 years ago
10.3390/plants8080270
Constructing a Reference Genome in a Single Lab: The Possibility to Use Oxford Nanopore TechnologyCited by: 10
Author(s): Yun Gyeong Lee, Sang Chul Choi, Yuna Kang, Kyeong Min Kim, Chon-Sik Kang, Chang-Soo Kim
Software Mentions: 1
Published: over 6 years ago