Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: TGS
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/TGS
Rapid Reconstruction of Time-Varying Gene Regulatory Networks
2 versions
Latest release: over 4 years ago
115 downloads last month
Papers Mentioning TGS 18
10.1038/srep43793
Hybrid sequencing and map finding (HySeMaFi): optional strategies for extensively deciphering gene splicing and expression in organisms without reference genomeCited by: 24
Author(s): Guogui Ning, Cheng Xu, Ping Luo, Fan Liang, Zhen Wang, Guoliang Yu, Xin Li, Depeng Wang, Manzhu Bao
Software Mentions: 5
Published: almost 8 years ago
10.1038/s41598-020-77520-1
Time-course profiling of bovine alphaherpesvirus 1.1 transcriptome using multiplatform sequencingCited by: 8
Author(s): Norbert Moldován, Gábor Torma, Gábor Gulyás, Ákos Hornyák, Zoltán Zádori, Victoria A Jefferson, Zsolt Csabai, Miklós Boldogkői, Dóra Tombácz, Florencia Meyer, Zsolt Boldogköi
Software Mentions: 4
Published: about 4 years ago
10.1186/s40748-021-00131-9
Methods for exploring the faecal microbiome of premature infants: a reviewCited by: 3
Author(s): Jacob A. F. Westaway, Roger Huerlimann, Catherine M. Miller, Yoga Kandasamy, Robert Norton, Donna Rudd
Software Mentions: 3
Published: almost 4 years ago
10.1186/1471-2105-7-S2-S8
Independent Component Analysis-motivated Approach to Classificatory Decomposition of Cortical Evoked PotentialsCited by: 6
Author(s): Tomasz G. Smolinski, Roger Buchanan, Grzegorz M. Boratyn, Mariofanna Milanova, Astrid A. Prinz
Software Mentions: 2
Published: over 18 years ago
10.1186/s12862-017-0908-0
Low genetic but high morphological variation over more than 1000 km coastline refutes omnipresence of cryptic diversity in marine nematodesCited by: 21
Author(s): Daniel Oliveira, Wilfrida Decraemer, Tom Moens, Giovanni dos Santos, Sofie Derycke
Software Mentions: 2
Published: almost 8 years ago
10.3390/biom11081111
Analyzing Modern Biomolecules: The Revolution of Nucleic-Acid Sequencing – ReviewCited by: 10
Author(s): Gabriel Dorado, Sergio Gálvez, Teresa Rosales, Víctor F. Vásquez, Pilar Hernández
Software Mentions: 2
Published: over 3 years ago
10.3389/fpls.2017.00006
Identification of Submergence-Responsive MicroRNAs and Their Targets Reveals Complex MiRNA-Mediated Regulatory Networks in Lotus (Nelumbo nucifera Gaertn)Cited by: 22
Author(s): Qijiang Jin, Yingchun Xu, Neil S. Mattson, Xin Li, Bei Wang, Xiao Zhang, Hongwei Jiang, Xiaojing Liu, Yanjie Wang, Dongrui Yao
Software Mentions: 2
Published: almost 8 years ago
10.3390/jcm9123811
Augmented Realities, Artificial Intelligence, and Machine Learning: Clinical Implications and How Technology Is Shaping the Future of MedicineCited by: 15
Author(s): Gaby Moawad, Jad Elkhalil, Jordan S. Klebanoff, Sara Rahman, Nassir Habib, İbrahim Alkatout
Software Mentions: 2
Published: about 4 years ago
10.1038/emi.2017.88
A comparative study on the characterization of hepatitis B virus quasispecies by clone-based sequencing and third-generation sequencingCited by: 8
Author(s): Jing Li, Mingjie Wang, Demin Yu, Yue Han, Zhitao Yang, Lei Wang, Xinxin Zhang, Feng Liu
Software Mentions: 1
Published: almost 8 years ago
10.1186/s40246-017-0118-2
Evaluating somatic tumor mutation detection without matched normal samplesCited by: 38
Author(s): Jamie K. Teer, Yonghong Zhang, Lu Chen, Eric A. Welsh, W. Douglas Cress, Steven A. Eschrich, Anders Berglund
Software Mentions: 1
Published: over 7 years ago
10.3390/ijms22063080
miRNA Regulatory Functions in Farm Animal Diseases, and Biomarker Potentials for Effective TherapiesCited by: 24
Author(s): Duy Ngoc, Pier-Luc Dudemaine, Manas Mathur, Prashanth Suravajhala, Xin Zhao, Eveline M. Ibeagha‐Awemu
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12887-021-02648-6
Novel mutations in the PHKB gene in an iranian girl with severe liver involvement and glycogen storage disease type IX: a case report and review of literatureCited by: 3
Author(s): Zahra Beyzaei, Fatih Süheyl Ezgü, Bita Geramizadeh, Alireza Alborzi, Alireza Shojazadeh
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-019-49219-5
Whole-genome sequencing-based epidemiological analysis of anti-tuberculosis drug resistance genes in Japan in 2007: Application of the Genome Research for Asian Tuberculosis (GReAT) databaseCited by: 9
Author(s): Takemasa Takii, Kouhei Seki, Yasutaka Wakabayashi, Yuta Morishige, Tsuyoshi Sekizuka, Akifumi Yamashita, Kengo Kato, Kazuhiro Uchimura, Akihiro Ohkado, Naoto Keicho, Satoshi Mitarai, Makoto Kuroda, Seiya Kato
Software Mentions: 1
Published: over 5 years ago
10.1186/s12864-017-3552-6
A vast genomic deletion in the C56BL/6 genome affects different genes within the Ifi200 cluster on chromosome 1 and mediates obesity and insulin resistanceCited by: 6
Author(s): Heike Vogel, Markus Jähnert, Mandy Stadion, Daniela Matzke, Stephan Scherneck, Annette Schürmann
Software Mentions: 1
Published: almost 8 years ago
10.3390/s17051095
A Case Study of Improving Yield Prediction and Sulfur Deficiency Detection Using Optical Sensors and Relationship of Historical Potato Yield with Weather Data in MaineCited by: 28
Author(s): Lakesh K. Sharma, Sukhwinder K. Bali, J. D. Dwyer, Andrew B. Plant, Arnab Bhowmik
Software Mentions: 1
Published: over 7 years ago
10.1186/2193-1801-3-145
Solution of underdetermined systems of equations with gridded a priori constraintsCited by: 5
Author(s): Stathis C. Stiros, Vasso Saltogianni
Software Mentions: 1
Published: almost 11 years ago
10.1051/parasite/2019052
Performance of seven commercial automated assays for the detection of low levels of anti-<i>Toxoplasma</i> IgG in French immunocompromised patientsCited by: 12
Author(s): Tiphaine Douet, Catherine Armengol, Éléna Charpentier, Pamela Chauvin, Sophie Cassaing, Xavier Iriart, Antoine Berry, Judith Fillaux
Software Mentions: 1
Published: almost 6 years ago
10.3390/plants8080270
Constructing a Reference Genome in a Single Lab: The Possibility to Use Oxford Nanopore TechnologyCited by: 10
Author(s): Yun Gyeong Lee, Sang Chul Choi, Yuna Kang, Kyeong Min Kim, Chon-Sik Kang, Chang-Soo Kim
Software Mentions: 1
Published: over 5 years ago