Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: insane
https://packages.ecosyste.ms/registries/pypi.org/packages/insane
A versatile tool for building membranes and/or solvent with proteins.
1 version
Latest release: over 7 years ago
91 downloads last month
Papers Mentioning insane 18
10.1371/journal.pcbi.1008807
Membrane-binding mechanism of the EEA1 FYVE domain revealed by multi-scale molecular dynamics simulationsCited by: 7
Author(s): Andreas Haahr Larsen, Lilya Tata, Laura John, Mark S. P. Sansom
Software Mentions: 6
Published: about 3 years ago
10.3390/molecules25245934
CGMD Platform: Integrated Web Servers for the Preparation, Running, and Analysis of Coarse-Grained Molecular Dynamics SimulationsCited by: 13
Author(s): Alessandro Marchetto, Zeineb Si Chaib, Claudia Rossi, Rui P. P. L. Ribeiro, Sergio Pantano, Giulia Rossetti, Alejandro Giorgetti
Software Mentions: 4
Published: almost 4 years ago
10.1016/j.dib.2019.104460
Structural dataset from microsecond-long simulations of yeast mitofusin Fzo1 in the context of membrane dockingCited by: 2
Author(s): Astrid F. Brandner, Dario De Vecchis, Marc Baaden, Mickaël M. Cohen, Antoine Taly
Software Mentions: 4
Published: about 5 years ago
10.1038/s41598-019-52478-x
Ligand-Induced Conformational Dynamics of A Tyramine Receptor from Sitophilus oryzaeCited by: 14
Author(s): Mac Kevin E. Braza, Jerrica Dominique N. Gazmen, Eizadora T. Yu, Ricky B. Nellas
Software Mentions: 4
Published: about 5 years ago
10.7554/eLife.66662
Homo-oligomerization of the human adenosine A2A receptor is driven by the intrinsically disordered C-terminusCited by: 9
Author(s): Khanh D. Nguyen, Michael Vigers, Eric Sefah, Susanna Seppälä, Jennifer Paige Hoover, Nicole S. Schonenbach, Blake Mertz, Michelle O’Malley, Songi Han
Software Mentions: 4
Published: over 3 years ago
10.1371/journal.pcbi.1007856
State-dependent protein-lipid interactions of a pentameric ligand-gated ion channel in a neuronal membraneCited by: 10
Author(s): Marc A. Dämgen, Philip C. Biggin
Software Mentions: 3
Published: almost 4 years ago
10.1093/jxb/ery353
Homology modeling and<i>in vivo</i>functional characterization of the zinc permeation pathway in a heavy metal P-type ATPaseCited by: 20
Author(s): Gilles Lekeux, Jean-Marc Crowet, Cécile Nouet, Marine Joris, Alice Jadoul, Bernard Bosman, Monique Carnol, Patrick Motté, Laurence Lins, Moreno Galleni, Marc Hanikenne
Software Mentions: 3
Published: about 6 years ago
10.1371/journal.pcbi.1007777
Molecular mechanism for bidirectional regulation of CD44 for lipid raft affiliation by palmitoylations and PIP2Cited by: 18
Author(s): Fude Sun, Carsten Schroer, Carlos R Palacios, Libin Xu, Shi-Zhong Luo, Siewert J. Marrink
Software Mentions: 3
Published: over 4 years ago
10.3389/fimmu.2019.02227
Serine Phosphorylation of L-Selectin Regulates ERM Binding, Clustering, and Monocyte Protrusion in Transendothelial MigrationCited by: 6
Author(s): Abigail Newe, Karolina Rzeniewicz, Melanie König, Carsten Schroer, Justin Joachim, Angela Rey-Gallardo, Siewert J. Marrink, Jürgen Deka, Maddy Parsons, Aleksandar Ivetic
Software Mentions: 2
Published: about 5 years ago
10.3389/fmolb.2021.619381
Optimizing Gō-MARTINI Coarse-Grained Model for F-BAR Protein on Lipid MembraneCited by: 22
Author(s): Md. Iqbal Mahmood, Adolfo B. Poma, Kei-ichi Okazaki
Software Mentions: 2
Published: almost 4 years ago
10.3389/fphys.2020.00250
Membrane Thinning Induces Sorting of Lipids and the Amphipathic Lipid Packing Sensor (ALPS) Protein MotifCited by: 18
Author(s): Niek van Hilten, Kai Steffen Stroh, Herre Jelger Risselada
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pcbi.1005972
Membrane perturbing properties of toxin mycolactone from Mycobacterium ulceransCited by: 25
Author(s): César A. López, Clifford J. Ünkefer, Basil I. Swanson, Jessica M. J. Swanson, S. Gnanakaran
Software Mentions: 2
Published: almost 7 years ago
10.1038/s41598-018-26070-8
Molecular details of dimerization kinetics reveal negligible populations of transient µ-opioid receptor homodimers at physiological concentrationsCited by: 33
Author(s): Derya Meral, Davide Provasi, Diego Prada‐Gracia, Jan Möller, Kristen A. Marino, Martin J. Lohse, Marta Filizola
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-018-23408-0
Modeling the effects of lipid peroxidation during ferroptosis on membrane propertiesCited by: 195
Author(s): Eran Agmon, Jérôme Solon, Patricia Bassereau, Brent R. Stockwell
Software Mentions: 2
Published: over 6 years ago
10.7554/eLife.31226
Stabilization and structural analysis of a membrane-associated hIAPP aggregation intermediateCited by: 59
Author(s): Diana C. Rodriguez Camargo, Kyle J. Korshavn, Alexander Jussupow, Kolio Raltchev, David Goričanec, Markus Fleisch, Riddhiman Sarkar, Kai Xue, Michaela Aichler, Gabriele Mettenleiter, Axel Walch, Carlo Camilloni, Franz Hagn, Bernd Reif, Ayyalusamy Ramamoorthy
Software Mentions: 2
Published: about 7 years ago
10.1016/j.chembiol.2016.06.008
Crystal Structure of a Group I Energy Coupling Factor Vitamin Transporter S Component in Complex with Its Cognate SubstrateCited by: 9
Author(s): Inokentijs Josts, Yasser Almeida‐Hernández, Antonina Andreeva, Henning Tidow
Software Mentions: 2
Published: over 8 years ago
10.3390/cells10040937
Polyunsaturated Phospholipids Increase Cell Resilience to Mechanical ConstraintsCited by: 5
Author(s): Linette Kadri, Amélie Bâcle, Spiro Khoury, Clarisse Vandebrouck, Jocelyn Bescond, Jean‐François Faivre, Thierry Ferreira, Stéphane Sebille
Software Mentions: 2
Published: over 3 years ago
10.1016/j.str.2018.10.024
State-dependent Lipid Interactions with the A2a Receptor Revealed by MD Simulations Using In Vivo-Mimetic MembranesCited by: 61
Author(s): Wanling Song, Hsin‐Yung Yen, Carol V. Robinson, Mark S.P. Sansom
Software Mentions: 2
Published: almost 6 years ago