Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: biomformat
https://packages.ecosyste.ms/registries/bioconductor.org/packages/biomformat
An interface package for the BIOM file format
1 version
Latest release: about 1 year ago
7 dependent packages
422,550 downloads total
Papers Mentioning biomformat 18
10.3390/microorganisms7110547
Linking Soil Fungal Generality to Tree Richness in Young Subtropical Chinese ForestsCited by: 9
Author(s): Christina Weißbecker, Anna Heintz‐Buschart, Helge Bruelheide, François Buscot, Tesfaye Wubet
Software Mentions: 19
Published: about 5 years ago
10.3389/fmicb.2020.570985
Differently Pre-treated Rapeseed Meals Affect in vitro Swine Gut Microbiota CompositionCited by: 8
Author(s): Long Cheng, S. de Vries, Koen Venema
Software Mentions: 11
Published: over 4 years ago
10.1098/rspb.2020.0302
Mating changes the genital microbiome in both sexes of the common bedbug <i>Cimex lectularius</i> across populationsCited by: 4
Author(s): Sara Bellinvia, Paul R. Johnston, Susan Mbedi, Oliver Otti
Software Mentions: 10
Published: over 4 years ago
10.3389/fpls.2019.00910
Characterization of the Wood Mycobiome of Vitis vinifera in a Vineyard Affected by Esca. Spatial Distribution of Fungal Communities and Their Putative Relation With Leaf SymptomsCited by: 57
Author(s): Giovanni Del Frari, Alex Gobbi, Marie Rønne Aggerbeck, Helena Oliveira, Lars Hestbjerg Hansen, Ricardo B. Ferreira
Software Mentions: 9
Published: over 5 years ago
10.3389/fmicb.2017.00358
Temporal Variations in Cigarette Tobacco Bacterial Community Composition and Tobacco-Specific Nitrosamine Content Are Influenced by Brand and Storage ConditionsCited by: 38
Author(s): Jessica Chopyk, Suhana Chattopadhyay, Prachi Kulkarni, Eoghan M. Smyth, Lauren E. Hittle, Joseph N. Paulson, Mihai Pop, Stephanie Buehler, Pamela I. Clark, Emmanuel F. Mongodin, Amy R. Sapkota
Software Mentions: 7
Published: almost 8 years ago
10.1186/s40793-020-00365-8
Seasonal dynamics in taxonomy and function within bacterial and viral metagenomic assemblages recovered from a freshwater agricultural pondCited by: 14
Author(s): Jessica Chopyk, Daniel J. Nasko, Sarah Allard, Anthony Bui, Mihai Pop, Emmanuel F. Mongodin, Amy R. Sapkota
Software Mentions: 7
Published: about 4 years ago
10.12688/f1000research.9618.2
biojs-io-biom, a BioJS component for handling data in Biological Observation Matrix (BIOM) formatCited by: 2
Author(s): Markus J. Ankenbrand, Niklas Terhoeven, Sonja Hohlfeld, Frank Förster, Alexander Keller
Software Mentions: 7
Published: almost 8 years ago
10.3389/fmicb.2018.00792
Agricultural Freshwater Pond Supports Diverse and Dynamic Bacterial and Viral PopulationsCited by: 25
Author(s): Jessica Chopyk, Sarah Allard, Daniel J. Nasko, Anthony Bui, Emmanuel F. Mongodin, Amy R. Sapkota
Software Mentions: 6
Published: over 6 years ago
10.7717/peerj.3730
Uncovering unseen fungal diversity from plant DNA banksCited by: 16
Author(s): Erin M. Datlof, Anthony S. Amend, Kamala Earl, J. Hayward, Clifford W. Morden, Rachael Wade, Geoffrey Zahn, Nicole A. Hynson
Software Mentions: 6
Published: over 7 years ago
10.1038/s41598-021-87365-x
Comparison of Argentinean microbiota with other geographical populations reveals different taxonomic and functional signatures associated with obesityCited by: 5
Author(s): Susana Pesoa, Néstor D. Portela, Eduardo Aguilar Fernández, Osvaldo Elbarcha, Martín Gotteland, Fabien Magne
Software Mentions: 6
Published: over 3 years ago
10.1038/s41598-020-70535-8
Bacterial microbiota diversity and composition in red and white wines correlate with plant-derived DNA contributions and botrytis infectionCited by: 16
Author(s): Alena M. Bubeck, Lena C. Preiss, Anna Jung, Elisabeth Dörner, Daniel Podlesny, Marija Kulis, Cynthia Maddox, Cesar Arze, Christian Zörb, Nikolaus Merkt, W. Florian Fricke
Software Mentions: 6
Published: over 4 years ago
10.1186/s40793-021-00382-1
Coupled DNA-labeling and sequencing approach enables the detection of viable-but-non-culturable Vibrio spp. in irrigation water sources in the Chesapeake Bay watershedCited by: 5
Author(s): Leena Malayil, Suhana Chattopadhyay, Emmanuel F. Mongodin, Amy R. Sapkota
Software Mentions: 5
Published: over 3 years ago
10.3389/fcimb.2020.00086
Methodological Insight Into Mosquito Microbiome StudiesCited by: 12
Author(s): Sonia M. Rodríguez‐Ruano, Eliška Juhaňáková, Jakub Vávra, Eva Nováková
Software Mentions: 4
Published: almost 5 years ago
10.3390/microorganisms9091976
Mussel Mass Mortality and the Microbiome: Evidence for Shifts in the Bacterial Microbiome of a Declining Freshwater BivalveCited by: 15
Author(s): Jordan Richard, Lewis J. Campbell, Eric Leis, Rose E. Agbalog, Chris D. Dunn, Diane L. Waller, Susan Knowles, Joel Putnam, Tony L. Goldberg
Software Mentions: 4
Published: over 3 years ago
10.3390/microorganisms9020272
Dynamics of the Apple Fruit Microbiome after Harvest and Implications for Fruit QualityCited by: 18
Author(s): Yvonne Bösch, E. Britt, Sarah Perren, Andreas Naef, Jürg E. Frey, Andreas Bühlmann
Software Mentions: 3
Published: almost 4 years ago
10.1016/j.dib.2020.105467
An intensive multilocation temporal dataset of fungal communities in the root and rhizosphere of Brassica napusCited by: 3
Author(s): Navid Bazghaleh, Steven D. Mamet, Jennifer K. Bell, Zayda Piedad Morales Moreira, Zelalem M. Taye, Shanay Williams, Melissa M. Arcand, Eric G. Lamb, Steven J. Shirtliffe, Sally Vail, Steven D. Siciliano, Bobbi L. Helgason
Software Mentions: 3
Published: over 4 years ago
10.1016/j.dib.2020.106143
An intensive multilocation temporal dataset of fungal and bacterial communities in the root and rhizosphere of Brassica napusCited by: 4
Author(s): Navid Bazghaleh, Jennifer K. Bell, Steven D. Mamet, Zayda Piedad Morales Moreira, Zelalem M. Taye, Shanay Williams, Charlotte E. Norris, Tanner Dowhy, Melissa M. Arcand, Eric G. Lamb, Matthew G. Links, Steven J. Shirtliffe, Sally Vail, Steven D. Siciliano, Bobbi L. Helgason
Software Mentions: 3
Published: over 4 years ago
10.3389/fnut.2020.00165
Daily Fermented Whey Consumption Alters the Fecal Short-Chain Fatty Acid Profile in Healthy AdultsCited by: 6
Author(s): Nicola Smith, N. G. Maloney, Sophie Shaw, Graham Horgan, Claire Fyfe, Jennifer C. Martin, Andy Suter, Karen P. Scott, Alexandra Johnstone
Software Mentions: 2
Published: over 4 years ago