Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: TissueEnrich
https://packages.ecosyste.ms/registries/bioconductor.org/packages/TissueEnrich
Tissue-specific gene enrichment analysis
1 version
Latest release: about 1 year ago
9,494 downloads total
Papers Mentioning TissueEnrich 18
10.1371/journal.pcbi.1009317
Meta-analysis of transcriptomic data reveals clusters of consistently deregulated gene and disease ontologies in Down syndromeCited by: 11
Author(s): Ilario De Toma, Cesar Sierra, Mara Dierssen
Software Mentions: 14
Published: about 3 years ago
10.1186/s13073-020-00806-6
Whole blood co-expression modules associate with metabolic traits and type 2 diabetes: an IMI-DIRECT studyCited by: 8
Author(s): Valborg Guðmundsdóttir, Helle Pedersen, Gianluca Mazzoni, Kristine H. Allin, Anna Artati, Joline W.J. Beulens, Karina Banasik, Caroline Brorsson, Henna Cederberg, Elizaveta Chabanova, Federico De Masi, Petra Elders, Ian Forgie, G Giordano, Harald Grallert, Ramneek Gupta, Mark Haid, Torben Hansen, Tue H. Hansen, Andrew T. Hattersley, Alison Heggie, Mun‐Gwan Hong, Angus G. Jones, Robert W. Koivula, Tarja Kokkola, Markku Laakso, Peter Løngreen, Anubha Mahajan, Andrea Mari, Colin N.A. Palmer, Donna McEvoy, Petra B. Musholt, Imre Pávó, Cornelia Prehn, Hartmut Ruetten, Martin Ridderstråle, Femke Rutters, Sapna Sharma, Roderick C. Slieker, Ali Syed, Juan Fernández Tajes, Cecilia Engel Thomas, Henrik S. Thomsen, Jagadish Vangipurapu, Henrik Vestergaard, Ana Viñuela, Agata Wesolowska-Andersen, Mark Walker, Jerzy Adamski, Jochen M. Schwenk, Mark McCarthy, Ewan R. Pearson, Emmanouil T. Dermitzakis, Paul W. Franks, Oluf Pedersen, Søren Brunak
Software Mentions: 7
Published: almost 4 years ago
10.1038/s42003-018-0219-z
RELACS nuclei barcoding enables high-throughput ChIP-seqCited by: 27
Author(s): Laura Arrigoni, Hoor Al-Hasani, Fidel Ramírez, Ilaria Panzeri, Devon P. Ryan, Diana Santacruz, Nadia Kress, J. Andrew Pospisilik, Ulrike Bönisch, Thomas Manke
Software Mentions: 6
Published: almost 6 years ago
10.1371/journal.pgen.1009652
Powerful detection of polygenic selection and evidence of environmental adaptation in US beef cattleCited by: 22
Author(s): Troy N. Rowan, Harly J. Durbin, Christopher M. Seabury, Robert D. Schnabel, Jared E. Decker
Software Mentions: 6
Published: over 3 years ago
10.1093/database/baaa096
The IMEx coronavirus interactome: an evolving map of <i>Coronaviridae</i>–host molecular interactionsCited by: 31
Author(s): Livia Perfetto, Chiara Pastrello, Noemi del-Toro, Margaret Duesbury, Marta Iannuccelli, Max Kotlyar, Luana Licata, Birgit Meldal, Kalpana Panneerselvam, Simona Panni, Negin Rahimzadeh, Sylvie Ricard‐Blum, Łukasz Salwiński, Anjali Shrivastava, Gianni Cesareni, Matteo Pellegrini, Sandra Orchard, Igor Jurišica, Henning Hermjakob, Pablo Porras
Software Mentions: 5
Published: almost 5 years ago
10.3390/cells9061491
Conserved Small Nucleotidic Elements at the Origin of Concerted piRNA Biogenesis from Genes and lncRNAsCited by: 7
Author(s): Silke Jensen, Emilie Brasset, Elise Parey, Hugues Roest Crollius, Igor V. Sharakhov, Chantal Vaury
Software Mentions: 4
Published: over 4 years ago
10.18632/oncotarget.27617
Profiling the circulating mRNA transcriptome in human liver diseaseCited by: 15
Author(s): Aejaz Sayeed, Brielle E Dalvano, David E. Kaplan, Usha Viswanathan, John L. Kulp, Alhaji H. Janneh, Lu-Yu Hwang, Adam Ertel, Cataldo Doria, Timothy M. Block
Software Mentions: 3
Published: over 4 years ago
10.1186/s13072-020-00338-8
The conserved DNMT1-dependent methylation regions in human cells are vulnerable to neurotoxicant rotenone exposureCited by: 6
Author(s): Dana M. Freeman, Dan Lou, Yanqiang Li, Suzanne N. Martos, Zhibin Wang
Software Mentions: 3
Published: over 4 years ago
10.1186/s13072-019-0260-2
Combined analysis of dissimilar promoter accessibility and gene expression profiles identifies tissue-specific genes and actively repressed networksCited by: 56
Author(s): Rebekah R. Starks, Anilisa Biswas, Ashish Jain, Geetu Tuteja
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pone.0233978
Brain-related genes are specifically enriched with long phase 1 intronsCited by: 3
Author(s): Eugene F. Baulin, Ivan V. Kulakovskiy, Mikhail A. Roytberg, T. V. Astakhova
Software Mentions: 2
Published: over 4 years ago
10.1038/s42003-021-02214-x
Placental secretome characterization identifies candidates for pregnancy complicationsCited by: 16
Author(s): Tina Napso, Xiaohui Zhao, Marta Ibañez-Lligoña, Ionel Sandovici, Richard G. Kay, Amy L. George, Fiona M. Gribble, Frank Reimann, Claire L Meek, Russell S. Hamilton, Amanda N. Sferruzzi‐Perri
Software Mentions: 2
Published: over 3 years ago
10.1002/advs.202003634
Parallel and Intertwining Threads of Domestication in Allopolyploid CottonCited by: 43
Author(s): Daojun Yuan, Corrinne E. Grover, Guanjing Hu, Mengqiao Pan, Emma R. Miller, Justin L. Conover, Spencer P. Hunt, Joshua A. Udall, Jonathan F. Wendel
Software Mentions: 2
Published: over 3 years ago
10.3389/fcell.2021.723656
Transcriptomics and Other Omics Approaches to Investigate Effects of Xenobiotics on the PlacentaCited by: 14
Author(s): Cheryl S. Rosenfeld
Software Mentions: 2
Published: about 3 years ago
10.3390/genes12081249
Proof of Gene Doping in a Mouse Model with a Human Erythropoietin Gene Transferred Using an Adenoviral VectorCited by: 7
Author(s): Takehito Sugasawa, Takuro Nakano, Shin‐ichiro Fujita, Yuki Matsumoto, Genki Ishihara, Kai Aoki, Koki Yanazawa, S. Ono, Shinsuke Tamai, Lev Manevich, Hiroshi Ueda, Noriyo Ishibashi, Kenshirou Tamai, Yasuharu Kanki, Yasuko Yoshida, Koichi Watanabe, Tohru Takemasa, Yasushi Kawakami, Kazuhiro Takekoshi
Software Mentions: 2
Published: about 3 years ago
10.21203/rs.3.rs-28592/v1
Interactome of SARS-CoV-2 / nCoV19 modulated host proteins with computationally predicted PPIsCited by: 11
Author(s): Kalyani B. Karunakaran, N. Balakrishnan, Madhavi K. Ganapathiraju
Software Mentions: 2
Published: over 4 years ago
10.3390/ijms21218317
Transcription Factor PLAGL1 Is Associated with Angiogenic Gene Expression in the PlacentaCited by: 10
Author(s): Rebekah R. Starks, Rabab Abu Alhasan, Haninder Kaur, Kathleen A. Pennington, Laura C. Schulz, Geetu Tuteja
Software Mentions: 2
Published: about 4 years ago
10.3389/fcell.2019.00386
Classification of Trispanins: A Diverse Group of Proteins That Function in Membrane Synthesis and Transport MechanismsCited by: 0
Author(s): Misty M. Attwood, Helgi B. Schiöth
Software Mentions: 1
Published: almost 5 years ago
10.3390/ijms21113872
Transcriptome Analysis of Maternal Gene Transcripts in Unfertilized Eggs of Misgurnus anguillicaudatus and Identification of Immune-Related Maternal GenesCited by: 4
Author(s): Chan‐Hee Kim, Eun Jeong Kim, Chaehwa Seo, Yoon Kwon Nam
Software Mentions: 1
Published: over 4 years ago