Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: bio

https://packages.ecosyste.ms/registries/pypi.org/packages/bio

bio
22 versions
Latest release: about 1 year ago
12 dependent packages
33,012 downloads last month

Papers Mentioning bio 18

Subspecies Niche Specialization in the Oral Microbiome Is Associated with Nasopharyngeal Carcinoma Risk
Cited by: 19
Author(s): Justine W. Debelius, Tingting Huang, Yonglin Cai, Alexander Ploner, Donal Barrett, Xiaoying Zhou, Xue Xiao, Yancheng Li, Jian Liao, Yuming Zheng, Guangwu Huang, Hans‐Olov Adami, Yi Xin Zeng, Zhe Zhang, Ye W
Software Mentions: 10
Published: about 4 years ago

10.12688/f1000research.12974.1

Using bio.tools to generate and annotate workbench tool descriptions
Cited by: 8
Author(s): Kenzo-Hugo Hillion, Ivan Kuzmin, Anton Khodak, Helena Rasche, Michael R. Crusoe, Hedi Peterson, Jon C. Ison, Hervé Ménager
Software Mentions: 8
Published: almost 7 years ago

10.1093/gigascience/giaa157

biotoolsSchema: a formalized schema for bioinformatics software description
Cited by: 7
Author(s): Jon C. Ison, Hans Ienasescu, Emil Karol Rydza, Piotr Jaroslaw Chmura, Kristoffer Rapacki, Alban Gaignard, Veit Schwämmle, Jacques van Helden, Matúš Kalaš, Hervé Ménager
Software Mentions: 7
Published: almost 4 years ago

10.1371/journal.pone.0163962

SeqKit: A Cross-Platform and Ultrafast Toolkit for FASTA/Q File Manipulation
Cited by: 1,226
Author(s): Wei Shen, Shuai Le, Yan Li, Fuquan Hu
Software Mentions: 7
Published: about 8 years ago

10.1038/s41598-019-45995-2

Temporal Stability of the Ruminal Bacterial Communities in Beef Steers
Cited by: 27
Author(s): Brooke A. Clemmons, Cameron Martino, Liesel G Schneider, Josh Lefler, Mallory Embree, Phillip R. Myer
Software Mentions: 5
Published: over 5 years ago

10.1002/ece3.7299

Flexibility in Red Sea <i>Tridacna maxima</i>‐Symbiodiniaceae associations supports environmental niche adaptation
Cited by: 7
Author(s): Susann Rossbach, Benjamin C. C. Hume, Anny Cárdenas, Gabriela Perna, Christian R. Voolstra, Carlos M. Duarte
Software Mentions: 5
Published: over 3 years ago

10.1155/2020/3165958

Genome-Wide Analysis, Characterization, and Expression Profile of the Basic Leucine Zipper Transcription Factor Family in Pineapple
Cited by: 6
Author(s): Qing Liu, Mengnan Chai, Man Zhang, Qing-Yu He, Zhenxia Su, S. V. G. N. Priyadarshani, Liping Liu, Guanxi Dong, Yuan Qin
Software Mentions: 5
Published: over 4 years ago

10.1186/s13059-018-1613-z

GC-biased gene conversion conceals the prediction of the nearly neutral theory in avian genomes
Cited by: 25
Author(s): Paulina Bolívar, Laurent Guéguen, Laurent Duret, Hans Ellegren, Carina F. Mugal
Software Mentions: 3
Published: almost 6 years ago

10.1111/1751-7915.13537

Specific pathogens and microbial abundance within liver and kidney tissues of wild marine fish from the Eastern Mediterranean Sea
Cited by: 15
Author(s): Dalit Meron, Nadav Davidovich, Maya Ofek‐Lalzar, Ran Berzak, Aviad Scheinin, Yael Regev, Rei Diga, Dan Tchernov, Danny Morick
Software Mentions: 2
Published: almost 5 years ago

10.1093/bib/bbz075

Community curation of bioinformatics software and data resources
Cited by: 13
Author(s): Jon C. Ison, Hervé Ménager, Bryan Brancotte, Erik Jaaniso, Ahto Salumets, Tomáš Raček, Anna‐Lena Lamprecht, Magnus Palmblad, Matúš Kalaš, Piotr Jaroslaw Chmura, John M. Hancock, Veit Schwämmle, Hans Ienasescu
Software Mentions: 2
Published: about 5 years ago

10.3390/v13060959

Metaviromes Reveal the Dynamics of Pseudomonas Host-Specific Phages Cultured and Uncultured by Plaque Assay
Cited by: 7
Author(s): Katrine Wacenius Skov Alanin, Laura Milena Forero‐Junco, Jacob Bruun Jørgensen, Tue Kjærgaard Nielsen, Morten Arendt Rasmussen, Witold Kot, Lars Hestbjerg Hansen
Software Mentions: 2
Published: over 3 years ago

10.1111/1751-7915.12428

Wine microbiology is driven by vineyard and winery anthropogenic factors
Cited by: 61
Author(s): Cédric Grangeteau, Chloé Roullier-Gall, Sandrine Rousseaux, Régis D. Gougeon, Philippe Schmitt‐Kopplin, Hervé Alexandre, Michèle Guilloux-Bénatier
Software Mentions: 2
Published: about 8 years ago

10.3389/fgene.2021.584197

Community Metabolic Interactions, Vitamin Production and Prebiotic Potential of Medicinal Herbs Used for Immunomodulation
Cited by: 2
Author(s): Christine Tara Peterson, Stanislav N. Iablokov, Sasha Uchitel, Deepak Chopra, Josué Pérez-Santiago, Dmitry A. Rodionov, Scott N. Peterson
Software Mentions: 2
Published: almost 4 years ago

10.1515/jib-2019-0059

JIB.tools 2.0 – A Bioinformatics Registry for Journal Published Tools with Interoperability to bio.tools
Cited by: 3
Author(s): Marcel Friedrichs, Alban Shoshi, Piotr Jaroslaw Chmura, Jon C. Ison, Veit Schwämmle, Falk Schreiber, Ralf Hofestädt, Björn Sommer
Software Mentions: 1
Published: almost 5 years ago

10.1002/1878-0261.12319

Basal‐like breast cancer engages tumor‐supportive macrophages via secreted factors induced by extracellular S100A4
Cited by: 26
Author(s): Lina Prasmickaite, Ellen Tenstad, Solveig Pettersen, Shakila Jabeen, Eivind Valen Egeland, Silje Nord, Abhilash D. Pandya, Mads H. Haugen, Vessela N. Kristensen, Anne‐Lise Børresen‐Dale, Olav Engebråten, Gunhild Mari Mælandsmo
Software Mentions: 1
Published: over 6 years ago

10.1007/s40641-020-00160-0

Tracking Improvement in Simulated Marine Biogeochemistry Between CMIP5 and CMIP6
Cited by: 124
Author(s): Roland Séférian, Sarah Berthet, Andrew Yool, Julien Palmiéri, Laurent Bopp, Alessandro Tagliabue, Lester Kwiatkowski, Olivier Aumont, James R. Christian, John Dunne, Marion Gehlen, Tatiana Ilyina, Jasmin G. John, Hongmei Li, Matthew C. Long, Jessica Y. Luo, Hideyuki Nakano, Anastasia Romanou, Jörg Schwinger, Charles A. Stock, Yeray Santana‐Falcón, Yohei Takano, Jerry Tjiputra, Hiroyuki Tsujino, Michio Watanabe, Tongwen Wu, Fanghua Wu, Akitomo Yamamoto
Software Mentions: 1
Published: over 4 years ago

10.3389/fgene.2020.581725

Regulation Between HSF1 Isoforms and HSPs Contributes to the Variation in Thermal Tolerance Between Two Oyster Congeners
Cited by: 4
Author(s): Youli Liu, Li Li, Hongsheng Qi, Huayong Que, Wei Wang, Guofan Zhang
Software Mentions: 1
Published: about 4 years ago

10.1038/sdata.2017.122

Climatologies at high resolution for the earth’s land surface areas
Cited by: 1,932
Author(s): Dirk Nikolaus Karger, Olaf Conrad, Jürgen Böhner, Tobias Kawohl, Holger Kreft, Rodrigo W. Soria-Auza, Niklaus E. Zimmermann, H. Peter Linder, Michael Kessler
Software Mentions: 1
Published: about 7 years ago